mRNA_H-elongata_contig133082.2356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133082.2356.1
Unique NamemRNA_H-elongata_contig133082.2356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.580e-19
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2 
Query:  713 QINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEAEL 859
            QINVGKLDP SG FTG+SDVYALAGYLRGRGEADEALTCLV KKDE+EL
Sbjct:   33 QINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 81
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-7
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEAEL 859
            +QINV  +DP +GI TG S+VY LAGY+R + E D ALT LV+ KD A +
Sbjct:   32 VQINVANVDPVTGIMTGDSNVYCLAGYIRFKSEGDMALTSLVRAKDAAAV 81
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A8J2SUB2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUB2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.870e-7
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEA 853
            +QINVG +DP +G+ TG S+ YAL+GY+R +GE+D ALT LV+K+DE+
Sbjct:  140 VQINVGTIDPNTGLHTGGSETYALSGYVRNKGESDMALTELVRKQDES 187
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BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 5.640e-7
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEAEL 859
            +QINV  +DP +G+FTG+S  YA+AGY+R + E D A T LV+  D+  L
Sbjct:   32 VQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKKVL 81
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.480e-6
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKD 847
            +QINVG +DP +G+FTG+S  +A++GY+R + EAD ALT L +  D
Sbjct:   32 VQINVGNVDPVTGLFTGESTPFAISGYVRAKSEADMALTALAKAND 77
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP)

HSP 1 Score: 55.8 bits (133), Expect = 1.730e-6
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKD 847
            +QINVG+++ A+G+FTG+SD YALAGY+R  GE D+A+T L ++ D
Sbjct:   32 VQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 8.260e-6
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKD 847
            +QINV +++ A+G+FTG+SD +ALAGY+R +GEAD ALT L ++ D
Sbjct:   32 VQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A2R5GQF8_9STRA (40S ribosomal protein S21 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQF8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.920e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEAE 856
            +QINVG +DP +G++TG+    AL+GY+R +GE D ALT L  K  E E
Sbjct:   32 IQINVGHVDPDTGLYTGKFTPIALSGYIRSKGEGDMALTALASKIQEEE 80
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A067BLB8_SAPPC (40S ribosomal protein S21 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLB8_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 2.110e-5
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDE 850
            +QI V ++D A+G++TG +DVYALAGY+R +GE D ALT L ++ +E
Sbjct:   32 VQIAVAQVD-ANGVYTGHNDVYALAGYIRNKGEGDHALTELARRAEE 77
[Close]
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Match: A0A0P1AAL2_PLAHL (40S ribosomal protein S21 n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AAL2_PLAHL)

HSP 1 Score: 51.6 bits (122), Expect = 5.400e-5
Identity = 25/46 (54.35%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  710 LQINVGKLDPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKD 847
            +QINVG+++ A+G+FTG+SD +ALAGY+R  GE D A+T L ++ D
Sbjct:   32 VQINVGRVN-ANGVFTGESDTFALAGYIRHHGEGDIAITELSRQAD 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133082.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FW88_ECTSI2.580e-1989.8040S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID... [more]
A0A1Z5KP36_FISSO1.620e-756.0040S ribosomal protein S21 n=1 Tax=Fistulifera sola... [more]
A0A8J2SUB2_9STRA1.870e-758.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8BZU9_THAPS5.640e-750.0040S ribosomal protein S21 n=1 Tax=Thalassiosira ps... [more]
A0A7S0FIC7_9STRA1.480e-652.1740S ribosomal protein S21 n=1 Tax=Minutocellus pol... [more]
G4ZUD9_PHYSP1.730e-656.5240S ribosomal protein S21 n=7 Tax=Peronosporaceae ... [more]
K3WSU9_GLOUD8.260e-656.5240S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID... [more]
A0A2R5GQF8_9STRA8.920e-651.0240S ribosomal protein S21 n=1 Tax=Hondaea fermenta... [more]
A0A067BLB8_SAPPC2.110e-553.1940S ribosomal protein S21 n=5 Tax=Saprolegniaceae ... [more]
A0A0P1AAL2_PLAHL5.400e-554.3540S ribosomal protein S21 n=16 Tax=Peronosporaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133082contigH-elongata_contig133082:89..1809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue9e-17
Seed eggNOG ortholog2880.D7FW88
Preferred nameRPS21
KEGG rclassRC01978
KEGG koko:K02971,ko:K03093,ko:K03644,ko:K03955,ko:K08854,ko:K10900,ko:K13179,ko:K20168
KEGG TC3.D.1.6
KEGG ReactionR07767,R07768
KEGG Pathwayko00190,ko00785,ko01100,ko03010,ko04137,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05202,map00190,map00785,map01100,map03010,map04137,map04714,map04723,map04932,map05010,map05012,map05016,map05202
KEGG ModuleM00146,M00177
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009657,GO:0009658,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030867,GO:0031090,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042127,GO:0042175,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3486@1,KOG3486@2759
EC2.7.11.1,2.8.1.8,3.6.4.12,3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03011,ko03021,ko03032,ko03041,ko03400,ko04131
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein S21e
Ec32 orthologEc-01_003800.1
Exons2
Model size1348
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133082.2356.1prot_H-elongata_contig133082.2356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133082 575..1226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.5960398-UTR-H-elongata_contig133082:88..5741622929789.5960398-UTR-H-elongata_contig133082:88..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133082 89..574 -
1691679158.3130286-UTR-H-elongata_contig133082:88..5741691679158.3130286-UTR-H-elongata_contig133082:88..574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133082 89..574 -
1622929789.7033687-UTR-H-elongata_contig133082:1226..18091622929789.7033687-UTR-H-elongata_contig133082:1226..1809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133082 1227..1809 -
1691679158.3548949-UTR-H-elongata_contig133082:1226..18091691679158.3548949-UTR-H-elongata_contig133082:1226..1809Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133082 1227..1809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929789.6485257-CDS-H-elongata_contig133082:574..6341622929789.6485257-CDS-H-elongata_contig133082:574..634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133082 575..634 -
1691679158.3316925-CDS-H-elongata_contig133082:574..6341691679158.3316925-CDS-H-elongata_contig133082:574..634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133082 575..634 -
1622929789.6658378-CDS-H-elongata_contig133082:1007..12261622929789.6658378-CDS-H-elongata_contig133082:1007..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133082 1008..1226 -
1691679158.342322-CDS-H-elongata_contig133082:1007..12261691679158.342322-CDS-H-elongata_contig133082:1007..1226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133082 1008..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133082.2356.1

>prot_H-elongata_contig133082.2356.1 ID=prot_H-elongata_contig133082.2356.1|Name=mRNA_H-elongata_contig133082.2356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MACFCSSLRTPLLSRRPPFSRRVSLTPVQFKGNPVRPPLSLDLQINVGKL
DPASGIFTGQSDVYALAGYLRGRGEADEALTCLVQKKDEAEL*
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mRNA from alignment at H-elongata_contig133082:89..1809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133082.2356.1 ID=mRNA_H-elongata_contig133082.2356.1|Name=mRNA_H-elongata_contig133082.2356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1721bp|location=Sequence derived from alignment at H-elongata_contig133082:89..1809- (Himanthalia elongata Himel1 dioecious)
CCCTCGCAATTCCTCTTCTTCTATAAGTCAACTCTTGGGCTTTTGTTTTA
CGTCCCCACATGACCCGACGAACTTACTACTACTGAGGAACCGATTTATC
AAATGTGAAGATTTTGTACTTAAGGGTAGTGCTGTACACATTCTAACCTG
ACGATAGTTGGTCCCCTGGACTACACTCTTATGGTGCTAAGAAGGTCTAT
AGTGGATGTTGATGTTCGGAGGGTTGGAATGAGTTCATTTTAAAAAAAAT
AAAAATATTTCATGAAAACCCCCCGTCCTCTCTACAGCCCACTCTCTAAG
CTCTCAATTGGCGTCCCCACATTATGAATAATGTAAGTGGCTGGACAATG
GTGGACTTCTCCCCGACATCATACCGCTGATCCGATGAATTTCCTTTTGG
GGAATACGATTAGTGACGTGTGACGATTTTGTGTTCAAAAGGTAATAATG
TACACATTCGAATCTGACGATAGTTGTTCCCATGAAACTGTTCGAAGGGT
TTGAATAAGTTCATGTGTTTTTTTAAGGAAAATCCCCCGCAACCTTGCTG
TCTTACCGTAAAGAATACGTGACGTGCGAGGAAATGGCTTGTTTTTGTTC
CTCTTTACGAACTCCCTTGCTATCTCGGCGACCCCCCTTTTCTCGACGTG
TCAGCCTCACACCCGTTCAATTTAAAGGAAATCCGGTTCGACCTCCCCTC
TCCCTTGACCTTCAGATTAACGTGGGCAAGCTTGACCCCGCCTCGGGCAT
CTTCACCGGCCAGTCAGACGTGTACGCCCTTGCTGGTTACTTGCGCGGAA
GGGTAAGGACTAAGAAAGCAATAACGCCTTCCGATCTCCTCCCCCACTGA
CTTGAAAGCGTTACAGAGCCTATAGCTCTTGCACACGTATTGAATTCGTC
GGTGATCTTCTGCGAAACTACCATTTCGTTTCTCAAGCCGGCTTTCGATC
GACCCTATAAAATCATTCTGAGTGAAAGGATAGCACTCGTCGGTGTCAAG
TGTCTCCTACGTCTGTATGCCACCCTTTTTGTCCCCCCCCCCTCCTCCGG
CCGTGTTTCCCCGTGTTCCATGTTACTAACTGTCTGTGAAACAAGGTTTC
GTGGGAAACAAATAATATCTTGCTAAGGTCCACCCGTTGATCCGAAAACA
TAATTCCCGTCTGTACTCTTACCAGGGAGAGGCTGACGAGGCGCTGACTT
GCCTGGTCCAAAAGAAAGACGAAGCGGAGCTCTAATACGTTGGGCGGGGT
GTCCGAGGTGGTGTTGATGGGATGGACCTAGCCGAGAGGAAATTAATTGA
TTTCCTGTTTTCATTAGAGTCTTCGGCGCCATTCAGTTGGCGGCCAACGT
GACGTGTCACGAAAGTTCATCGGGCCACTGGTGCTTCTCAACAATGGAGC
ATTTAATTTGACGGAAGGAAATTAGTCGTGCGGCTGAATGTCTAGTGTGT
TATTTTACGTGCTCACATCCAGTAAGTAAGGTCGTTATGCCACAGAAGGC
GGCGTGCACGCACGGGTACGCCCGGTGTGTTTGCTTTCACAAGGCCAGAT
AATACCACACGTTCAGTCACACCCTGAGGTCCGCCACGAAGACCTCGGTA
TTTGTTACTTCGACATGAATGACATCGCTGTACAGATGATAGTACGTTTG
TGATCACATCTTTTAAGAGTTCCTGAATTTGAATTTTGAATTGAATCCTC
ACATAAGCTTCTGACATTATG
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Coding sequence (CDS) from alignment at H-elongata_contig133082:89..1809-

>mRNA_H-elongata_contig133082.2356.1 ID=mRNA_H-elongata_contig133082.2356.1|Name=mRNA_H-elongata_contig133082.2356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig133082:89..1809- (Himanthalia elongata Himel1 dioecious)
ATGGCTTGTTTTTGTTCCTCTTTACGAACTCCCTTGCTATCTCGGCGACC
CCCCTTTTCTCGACGTGTCAGCCTCACACCCGTTCAATTTAAAGGAAATC
CGGTTCGACCTCCCCTCTCCCTTGACCTTCAGATTAACGTGGGCAAGCTT
GACCCCGCCTCGGGCATCTTCACCGGCCAGTCAGACGTGTACGCCCTTGC
TGGTTACTTGCGCGGAAGGATGGCTTGTTTTTGTTCCTCTTTACGAACTC
CCTTGCTATCTCGGCGACCCCCCTTTTCTCGACGTGTCAGCCTCACACCC
GTTCAATTTAAAGGAAATCCGGTTCGACCTCCCCTCTCCCTTGACCTTCA
GATTAACGTGGGCAAGCTTGACCCCGCCTCGGGCATCTTCACCGGCCAGT
CAGACGTGTACGCCCTTGCTGGTTACTTGCGCGGAAGGGGAGAGGCTGAC
GAGGCGCTGACTTGCCTGGTCCAAAAGAAAGACGAAGCGGAGCTCTAAGG
AGAGGCTGACGAGGCGCTGACTTGCCTGGTCCAAAAGAAAGACGAAGCGG
AGCTCTAA
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