mRNA_H-elongata_contig132719.2339.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132719.2339.1
Unique NamemRNA_H-elongata_contig132719.2339.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.340e-27
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    4 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVSH 264
            QAYR L  FVA+SWELYR EL +V FPVFVHCYLTL+    G +A  LM+ WGG HE  ++++MTLL+MV  ++H  AS+Y +LV +
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLVKN 194
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.370e-25
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    4 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLV 258
            QAYR L  FVA+SWELYR EL +V FPVFVHCYLTL+    G +A  LM+ WGG HE  ++++MTLL+MV  ++H  AS+Y +LV
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLV 192
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A5E4PNZ5_9NEOP (TFIID_NTD2 domain-containing protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4PNZ5_9NEOP)

HSP 1 Score: 72.4 bits (176), Expect = 6.550e-13
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    7 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 261
            AY +L  FV +S ++Y+ EL+++ +PVFVH YL LI     D A    + + G  E  YQED+  L +VKTKDH+  +E A++ S
Sbjct:   67 AYESLKKFVENSLDVYKFELSTLLYPVFVHMYLLLILYDHNDHAEKFFEKFSGEQEDYYQEDLQRLSVVKTKDHIKENEIAEIYS 151
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A7S4IIL6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IIL6_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.660e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   10 YRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQ 252
            Y +L  +V +S  + RAEL SV FPVFVHCYL LI  G  D+A+  M   G  H   + E++  L  +KT +HL  +E AQ
Sbjct:   73 YASLKEWVNASLNVNRAELKSVLFPVFVHCYLDLIAKGFFDEAVAFMGAHGSSHRDVHTEEVNTLMSIKTHEHLKENELAQ 153
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: F0ZZF6_DICPU (LisH domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZZF6_DICPU)

HSP 1 Score: 69.3 bits (168), Expect = 8.060e-12
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 255
            +++Y+ L N++ SS ++Y+ EL S+ +PVFVH Y+ LI  G   QA  LM+  G  HE  + +D+ LLR +   DHL  +E   L
Sbjct:  265 LESYKKLRNWIHSSLDIYKNELLSILYPVFVHSYIDLITKGYPTQARELMEQIGPDHEEYFGDDLKLLRGISNTDHLKENELVDL 349
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: Q54KH7_DICDI (Transcription initiation factor TFIID subunit n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54KH7_DICDI)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 255
            ++ Y+ L N++ SS ++Y+ EL S+ +PVFVH Y+ LI  G   QA  LM+  G  HE  + +D+ LLR +   DHL  +E   L
Sbjct:  281 LEQYKKLGNWIHSSLDIYKNELLSILYPVFVHSYIDLITKGYPQQARELMEKIGPDHEEYFGDDLKLLRGISNTDHLKENELVDL 365
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: V5GE31_ANOGL (Transcription initiation factor TFIID subunit 5 (Fragment) n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GE31_ANOGL)

HSP 1 Score: 66.2 bits (160), Expect = 1.130e-11
Identity = 30/81 (37.04%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    7 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYA 249
            +Y  L  FV  + ++Y+ EL ++ +PVFVH YL L+ +G  ++A++LMK +G   ++ YQ+D+  L +V  +DH+  +E A
Sbjct:   65 SYLELKYFVEGTLDIYKHELGTILYPVFVHMYLELVYNGHTEKAISLMKKFGPEQDSYYQDDLRKLALVIKRDHMNGNELA 145
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A1Y2GUC1_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUC1_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-11
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    4 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 255
            QAY +L  +V SS +LY+ EL S+ FP+FVH YL L+  G  DQA T M  +   H   + +D+  L  +    H+A +E AQ+
Sbjct:  127 QAYSSLRRWVESSLDLYKPELISILFPLFVHSYLNLVSRGLKDQASTFMNNFRADHLEMHPQDIARLATITDAQHVAENELAQM 210
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BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A212ELQ3_DANPL (Wd-repeat protein n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A212ELQ3_DANPL)

HSP 1 Score: 66.6 bits (161), Expect = 7.030e-11
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    7 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 261
            AY +L  FV +S ++Y+ EL+++ +PVFVH YL LI     + A    + +G   E  YQED+T L +VK KD +  +E A++ S
Sbjct:   67 AYDSLKKFVENSLDIYKYELSTLLYPVFVHMYLALILYDHNEHAYKFFEKFGLEQEDYYQEDLTRLSIVKHKDQIKGNEIAEIYS 151
[Close]
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: UPI00200FDF20 (transcription initiation factor TFIID subunit 5 isoform X1 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200FDF20)

HSP 1 Score: 66.6 bits (161), Expect = 7.030e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    7 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 261
            AY +L  FV +S ++Y+ EL+++ +PVFVH Y+ LI     + AM  M+ +G   E  YQED+  + +VK+K+ +  +E A++ S
Sbjct:   67 AYDSLKKFVETSLDVYKHELSTLLYPVFVHMYMVLILYDHTEHAMNFMEKFGPEQEDYYQEDLMKISIVKSKEQIKGNELAEIYS 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL6_9PHAE2.340e-2756.32TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
D7FXT3_ECTSI2.370e-2557.65TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A5E4PNZ5_9NEOP6.550e-1342.35TFIID_NTD2 domain-containing protein n=1 Tax=Lepti... [more]
A0A7S4IIL6_9EUKA1.660e-1244.44Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
F0ZZF6_DICPU8.060e-1240.00LisH domain-containing protein n=1 Tax=Dictyosteli... [more]
Q54KH7_DICDI1.100e-1140.00Transcription initiation factor TFIID subunit n=1 ... [more]
V5GE31_ANOGL1.130e-1137.04Transcription initiation factor TFIID subunit 5 (F... [more]
A0A1Y2GUC1_9FUNG3.800e-1140.48WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A212ELQ3_DANPL7.030e-1140.00Wd-repeat protein n=1 Tax=Danaus plexippus plexipp... [more]
UPI00200FDF207.030e-1137.65transcription initiation factor TFIID subunit 5 is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132719contigH-elongata_contig132719:1015..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FXT3
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase II promoter
EggNOG OGsCOG2319@1,KOG0263@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.2595055-CDS-H-elongata_contig132719:1014..11491622929788.2595055-CDS-H-elongata_contig132719:1014..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132719 1015..1149 +
1691679157.8141828-CDS-H-elongata_contig132719:1014..11491691679157.8141828-CDS-H-elongata_contig132719:1014..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132719 1015..1149 +
1622929788.2727165-CDS-H-elongata_contig132719:1506..16351622929788.2727165-CDS-H-elongata_contig132719:1506..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132719 1507..1635 +
1691679157.8300467-CDS-H-elongata_contig132719:1506..16351691679157.8300467-CDS-H-elongata_contig132719:1506..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132719 1507..1635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132719.2339.1prot_H-elongata_contig132719.2339.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132719 1015..1635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132719.2339.1

>prot_H-elongata_contig132719.2339.1 ID=prot_H-elongata_contig132719.2339.1|Name=mRNA_H-elongata_contig132719.2339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLM
KTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVSH
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mRNA from alignment at H-elongata_contig132719:1015..1635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132719.2339.1 ID=mRNA_H-elongata_contig132719.2339.1|Name=mRNA_H-elongata_contig132719.2339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig132719:1015..1635+ (Himanthalia elongata Himel1 dioecious)
GTACAAGCCTACCGGGCGTTGGTAAACTTCGTGGCGTCATCCTGGGAGCT
CTACAGGGCCGAGCTGAACAGCGTAACCTTTCCGGTTTTCGTCCACTGCT
ACCTTACGCTCATCGAGTCGGGCGACGGGGACCAGGTGACTCACTGAACC
GTGCACGGTTATGTATGCTGGGTTACCTCAGAGCTGGAGTCGGACGATCT
TGACCTTGAGGCTTGATGGTGGTGGCCAATTTCCAGTTTAAGCTGTAGTT
AATAATTAATACTGTTCAATAGCACTCGACATTAGTTTTGGATGGATTTT
GTGTACCCACCACGAATAATGGAGCTTGCTTGATTATTTCGTTTCCGAAG
AGCTTGGCTGTTATGTTTCTATTCCGCCTCGACCGGCGCGTGATGTCCTT
TGGAAGGAAGTCGTTTTGATACCGTTACGCTCCTTCTGTCGATCTCGCTG
TCGTGTCGTGTCGTATCGTCTTGACTTGACTGCTTTAAGTAGGCCATGAC
CCTGATGAAGACATGGGGCGGAGGGCACGAGGCGACGTACCAAGAAGATA
TGACCCTGCTGCGGATGGTGAAGACCAAAGACCATCTGGCCGCCTCCGAG
TACGCTCAGCTTGTGAGTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig132719:1015..1635+

>mRNA_H-elongata_contig132719.2339.1 ID=mRNA_H-elongata_contig132719.2339.1|Name=mRNA_H-elongata_contig132719.2339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig132719:1015..1635+ (Himanthalia elongata Himel1 dioecious)
GTACAAGCCTACCGGGCGTTGGTAAACTTCGTGGCGTCATCCTGGGAGCT
CTACAGGGCCGAGCTGAACAGCGTAACCTTTCCGGTTTTCGTCCACTGCT
ACCTTACGCTCATCGAGTCGGGCGACGGGGACCAGGTACAAGCCTACCGG
GCGTTGGTAAACTTCGTGGCGTCATCCTGGGAGCTCTACAGGGCCGAGCT
GAACAGCGTAACCTTTCCGGTTTTCGTCCACTGCTACCTTACGCTCATCG
AGTCGGGCGACGGGGACCAGGCCATGACCCTGATGAAGACATGGGGCGGA
GGGCACGAGGCGACGTACCAAGAAGATATGACCCTGCTGCGGATGGTGAA
GACCAAAGACCATCTGGCCGCCTCCGAGTACGCTCAGCTTGTGAGTCACG
CCATGACCCTGATGAAGACATGGGGCGGAGGGCACGAGGCGACGTACCAA
GAAGATATGACCCTGCTGCGGATGGTGAAGACCAAAGACCATCTGGCCGC
CTCCGAGTACGCTCAGCTTGTGAGTCAC
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