mRNA_H-elongata_contig132677.2335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132677.2335.1
Unique NamemRNA_H-elongata_contig132677.2335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 9.420e-48
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    4 SQAYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPLSGDVPSTSPYV 285
            S AYGVNMPFRSCCFCGSMD LLNPLVAQQMSGRAGRRGLDTQGNLLYMNM+WPKIQGLMLGDIPAIVG+DPQYPTIALHH LS + P    +V
Sbjct:  814 SLAYGVNMPFRSCCFCGSMDGLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSAETPGGMNFV 907
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BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.380e-38
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    4 SQAYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPLSGDVPS 270
            S AYGVNMPFR+CCFC SM+ +L PL+AQQMSGRAGRRGLDTQGNLL+MNMSWP+IQ LMLG IPAI G+DPQYPT+AL H LS   P+
Sbjct:  751 SLAYGVNMPFRTCCFCESMEGILTPLLAQQMSGRAGRRGLDTQGNLLFMNMSWPRIQYLMLGTIPAIQGQDPQYPTVALQHALSKIAPA 839
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BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A7S1ZG66_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG66_TRICV)

HSP 1 Score: 122 bits (305), Expect = 4.350e-30
Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPL--SGDVPSTSPYVVDLSRA 303
            AYGVNMPFRSC FCG M D L PL+AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + G++P+YP +AL H L  S D   T  +V D   A
Sbjct:  730 AYGVNMPFRSCVFCGDMGDALTPLIAQQMQGRAGRRGMDVQGNVVYVGMDWPYIENLMLGQISHVTGKEPRYPIMALQHCLAASNDPGDTQHFVHDDGEA 829
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BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A1Z5JDF0_FISSO (Helicase ATP-binding domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDF0_FISSO)

HSP 1 Score: 122 bits (305), Expect = 4.370e-30
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPL--SGDVPSTSPYVVDLSRA 303
            AYGVNMPFRSC FCG M D L PL+AQQM GRAGRRGLD QGN++Y+ M WP I+ LMLG I  + G++P+YPT+ L   L  S D   T  ++ D   A
Sbjct:  856 AYGVNMPFRSCIFCGDMGDDLTPLIAQQMQGRAGRRGLDVQGNIIYLGMDWPYIENLMLGQISIVTGKEPRYPTMCLQQALAASNDPDDTKHFIHDTDDA 955
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: B7G3A5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3A5_PHATC)

HSP 1 Score: 120 bits (302), Expect = 1.110e-29
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPL--SGDVPSTSPYVVD 291
            AYGVNMPFR+C FCG M D L PL+AQQM GRAGRRGLD QGN+LY+ M WP I+ LMLG I  + G++P+YP I L   L  S D   T  ++ D
Sbjct:  868 AYGVNMPFRTCIFCGDMGDALTPLIAQQMQGRAGRRGLDVQGNILYLGMDWPYIENLMLGQISQVTGKEPRYPLIVLQQALAASNDPDDTKHFIHD 963
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A7S1TTY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTY9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.420e-29
Identity = 56/79 (70.89%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    4 SQAYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIAL 240
            S AYGVNMPFRSC F G M +LL PL+AQQMSGRAGRRGLD +GNL+Y NM WPKI+ LMLG +PAI G DP YP + L
Sbjct:  273 SLAYGVNMPFRSCVFYGQMGNLLTPLMAQQMSGRAGRRGLDREGNLVYANMPWPKIKSLMLGRVPAIKGEDPLYPLLGL 351
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: F0YFT5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFT5_AURAN)

HSP 1 Score: 120 bits (301), Expect = 1.530e-29
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 LSQAYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPLSGD 261
            +S AYGVNMPFR+  FCG    LL PL+AQQM+GRAGRRGLDTQGNL+Y+ MSWP+I+ LM+G +PAI+G+ P +PT+AL   LS +
Sbjct: 1523 VSLAYGVNMPFRTVMFCGDEGSLLTPLLAQQMAGRAGRRGLDTQGNLVYLGMSWPRIRKLMVGTVPAILGKPPHFPTMALPLALSAE 1609
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A7S4IZ82_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZ82_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.850e-29
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPLS 255
            AYGVNMPFRSC FCG M   L PL+AQQM GRAGRRG+D QGN+LY+ M WP I+ LMLG I  + G++P+YP +AL H ++
Sbjct:  859 AYGVNMPFRSCVFCGDMGTTLTPLIAQQMQGRAGRRGMDVQGNVLYVGMDWPYIENLMLGQISQVTGKEPRYPIMALQHAIA 940
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: K0R6G6_THAOC (Helicase ATP-binding domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6G6_THAOC)

HSP 1 Score: 118 bits (296), Expect = 7.100e-29
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPL--SGDVPSTSPYVVDLSR 300
            AYGVNMPFRSC FCG M D L  L+AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  +VG++P++PT+AL+  +  S D   T  +V D ++
Sbjct:  641 AYGVNMPFRSCVFCGDMGDSLTALIAQQMQGRAGRRGMDVQGNVIYLGMEWPYIENLMLGQITNVVGKEPRFPTMALNGAIAASNDPDDTKHFVHDENK 739
[Close]
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Match: A0A6V2ICP0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ICP0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.730e-29
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   10 AYGVNMPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGRDPQYPTIALHHPLS 255
            AYGVNMPFRSC FCG M D L PL+AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + G+ P+YP IAL   L+
Sbjct:  740 AYGVNMPFRSCLFCGDMGDSLTPLIAQQMQGRAGRRGMDVQGNVIYLGMEWPYIENLMLGQISKVDGKQPRYPIIALQQALA 821
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132677.2335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI9.420e-4886.17Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA1.380e-3876.40P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1ZG66_TRICV4.350e-3058.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5JDF0_FISSO4.370e-3057.00Helicase ATP-binding domain-containing protein n=2... [more]
B7G3A5_PHATC1.110e-2958.33Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1TTY9_9STRA1.420e-2970.89Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YFT5_AURAN1.530e-2963.22Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4IZ82_9STRA3.850e-2962.20Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0R6G6_THAOC7.100e-2955.56Helicase ATP-binding domain-containing protein n=1... [more]
A0A6V2ICP0_9STRA9.730e-2963.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132677contigH-elongata_contig132677:741..1488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.1e-37
Seed eggNOG ortholog2880.D7FZQ4
Preferred nameDDX60
KEGG koko:K20103
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
EggNOG free text desc.helicase activity
EggNOG OGsCOG4581@1,KOG0949@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132677.2335.1prot_H-elongata_contig132677.2335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132677 765..1488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.967294-UTR-H-elongata_contig132677:740..7641622929787.967294-UTR-H-elongata_contig132677:740..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132677 741..764 +
1691679157.715904-UTR-H-elongata_contig132677:740..7641691679157.715904-UTR-H-elongata_contig132677:740..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132677 741..764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929787.9791267-CDS-H-elongata_contig132677:764..8211622929787.9791267-CDS-H-elongata_contig132677:764..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132677 765..821 +
1691679157.726849-CDS-H-elongata_contig132677:764..8211691679157.726849-CDS-H-elongata_contig132677:764..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132677 765..821 +
1622929787.9949799-CDS-H-elongata_contig132677:1263..14881622929787.9949799-CDS-H-elongata_contig132677:1263..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132677 1264..1488 +
1691679157.741084-CDS-H-elongata_contig132677:1263..14881691679157.741084-CDS-H-elongata_contig132677:1263..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132677 1264..1488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132677.2335.1

>prot_H-elongata_contig132677.2335.1 ID=prot_H-elongata_contig132677.2335.1|Name=mRNA_H-elongata_contig132677.2335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MPFRSCCFCGSMDDLLNPLVAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQ
GLMLGDIPAIVGRDPQYPTIALHHPLSGDVPSTSPYVVDLSRA*
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mRNA from alignment at H-elongata_contig132677:741..1488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132677.2335.1 ID=mRNA_H-elongata_contig132677.2335.1|Name=mRNA_H-elongata_contig132677.2335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig132677:741..1488+ (Himanthalia elongata Himel1 dioecious)
CTTTCTCAGGCCTACGGTGTGAATATGCCTTTCCGGTCCTGTTGCTTCTG
CGGCAGTATGGATGACCTTCTTAACCCGCTCGTGAGGATCCGCTGCTCTC
TCACGTTTTTGTCCTAACGCGTGGCTAGCATAGTCTTATCGTCTTAGTTT
GTGCCAGTCGAGTATTGGCGATAGCAGTTTATCTCGCCGTTACCCGCCAC
TGGCGGCGTTTGGCCTTGGCTAAGGTATTACTACTGTAGTGTTACTATGG
TATTACTAGTATTACTAATTGTAGTATCGCTATATGGTATTTCTAGTATT
ACTATTGCAGTATCGCTATGATATTTAGTATAAATATTGAACATTAGTAT
AATAGTATTTAATATTAACCCAACGGCGTGTAAAAGATCGTCGGTCGGTT
GTTTTAGTTGGTTGGTTGGTTGGTTGCTCCTCTGCGCCGCAACCCCCTCC
CGTTCCCTCTAGCCCCCCGACCGTGCCCCCGTTGCGCATAATGCCAAATA
CGATGGGAACTCCTCTGGCACAGGTGGCGCAGCAGATGTCTGGACGAGCG
GGTCGTCGGGGGCTGGACACCCAGGGCAACCTTCTGTACATGAACATGTC
CTGGCCGAAAATCCAGGGGCTGATGCTCGGAGACATCCCCGCAATCGTTG
GCAGGGACCCCCAATACCCTACAATCGCTCTTCACCACCCCTTGTCAGGT
GACGTACCGTCTACCAGCCCGTACGTAGTAGATCTATCTAGGGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig132677:741..1488+

>mRNA_H-elongata_contig132677.2335.1 ID=mRNA_H-elongata_contig132677.2335.1|Name=mRNA_H-elongata_contig132677.2335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig132677:741..1488+ (Himanthalia elongata Himel1 dioecious)
ATGCCTTTCCGGTCCTGTTGCTTCTGCGGCAGTATGGATGACCTTCTTAA
CCCGCTCATGCCTTTCCGGTCCTGTTGCTTCTGCGGCAGTATGGATGACC
TTCTTAACCCGCTCGTGGCGCAGCAGATGTCTGGACGAGCGGGTCGTCGG
GGGCTGGACACCCAGGGCAACCTTCTGTACATGAACATGTCCTGGCCGAA
AATCCAGGGGCTGATGCTCGGAGACATCCCCGCAATCGTTGGCAGGGACC
CCCAATACCCTACAATCGCTCTTCACCACCCCTTGTCAGGTGACGTACCG
TCTACCAGCCCGTACGTAGTAGATCTATCTAGGGCCTGAGTGGCGCAGCA
GATGTCTGGACGAGCGGGTCGTCGGGGGCTGGACACCCAGGGCAACCTTC
TGTACATGAACATGTCCTGGCCGAAAATCCAGGGGCTGATGCTCGGAGAC
ATCCCCGCAATCGTTGGCAGGGACCCCCAATACCCTACAATCGCTCTTCA
CCACCCCTTGTCAGGTGACGTACCGTCTACCAGCCCGTACGTAGTAGATC
TATCTAGGGCCTGA
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