mRNA_H-elongata_contig13245.2322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13245.2322.1
Unique NamemRNA_H-elongata_contig13245.2322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13245.2322.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.320e-9
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  358 YDNISEEDAPRFVPTVIFRGSHPVRSVGFSSDGGMFAAGSNDHTLR 495
            +D +  ++A RF PT++  GSHPVRSVGFS+DGG+FA G ND TLR
Sbjct:  696 FDRLVGDEASRFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLR 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13245.2322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR8_ECTSI3.320e-960.87CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13245contigH-elongata_contig13245:927..1646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size497
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.2161512-CDS-H-elongata_contig13245:926..10321622929786.2161512-CDS-H-elongata_contig13245:926..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13245 927..1032 -
1691679157.122824-CDS-H-elongata_contig13245:926..10321691679157.122824-CDS-H-elongata_contig13245:926..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13245 927..1032 -
1622929786.2420735-CDS-H-elongata_contig13245:1257..16461622929786.2420735-CDS-H-elongata_contig13245:1257..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13245 1258..1646 -
1691679157.1330543-CDS-H-elongata_contig13245:1257..16461691679157.1330543-CDS-H-elongata_contig13245:1257..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13245 1258..1646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13245.2322.1prot_H-elongata_contig13245.2322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13245 927..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13245.2322.1

>prot_H-elongata_contig13245.2322.1 ID=prot_H-elongata_contig13245.2322.1|Name=mRNA_H-elongata_contig13245.2322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
RPRQPAGQHCHASRPYQPGWQGKAVYQRLTEGGENTFQLQSPIFPPPSAT
HSPPSHDEREVKADSPVGSAQHAYSHVEDLSPDLGTIGEAGERSEDGAVS
GDEGIGGCNGNGIFITKRDYDNISEEDAPRFVPTVIFRGSHPVRSVGFSS
DGGMFAAGSNDHTLR
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mRNA from alignment at H-elongata_contig13245:927..1646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13245.2322.1 ID=mRNA_H-elongata_contig13245.2322.1|Name=mRNA_H-elongata_contig13245.2322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig13245:927..1646- (Himanthalia elongata Himel1 dioecious)
CGACCTCGGCAGCCCGCGGGCCAGCACTGCCATGCGTCTCGGCCTTACCA
GCCCGGGTGGCAGGGAAAAGCGGTCTATCAAAGGCTTACCGAGGGAGGAG
AAAACACCTTTCAACTTCAGTCGCCAATCTTCCCCCCGCCTTCGGCAACA
CATTCTCCACCCAGTCATGATGAGCGTGAAGTGAAGGCGGATAGCCCGGT
GGGTAGTGCTCAACATGCTTACTCACACGTTGAAGATCTGTCACCCGATC
TGGGGACAATTGGCGAGGCCGGCGAAAGGAGCGAAGACGGTGCTGTCAGC
GGCGACGAAGGCATCGGTGGTTGTAACGGTAACGGTATATTTATTACCAA
GAGAGACTACGACAACATTTCCGAGGAAGATGCCCCCAGGCGAGAGACTT
GTTGCCGCGGTGTACACGACTATCTAGATGCTGTCCGCGAGTGCGCTCGA
GTTTGGATGTTGAAGTGGGTTGGATATGCACGGGCCGCTAACCGAAGATA
TTGTGACTGTTACGAGCCATGTCGCGATGATTGGTCTGCTTGTGTCTTAA
TTCTCTTCTCCTGACGCTTGTTTTTGTCTCGCCTGTTTCTCTATCTCTCT
TGTTTTGCTGTTAGGTTTGTCCCCACAGTAATCTTCAGGGGGTCCCACCC
TGTACGATCGGTGGGCTTTTCGTCGGACGGTGGAATGTTCGCGGCTGGAA
GTAACGACCACACGCTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig13245:927..1646-

>mRNA_H-elongata_contig13245.2322.1 ID=mRNA_H-elongata_contig13245.2322.1|Name=mRNA_H-elongata_contig13245.2322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig13245:927..1646- (Himanthalia elongata Himel1 dioecious)
CGACCTCGGCAGCCCGCGGGCCAGCACTGCCATGCGTCTCGGCCTTACCA
GCCCGGGTGGCAGGGAAAAGCGGTCTATCAAAGGCTTACCGAGGGAGGAG
AAAACACCTTTCAACTTCAGTCGCCAATCTTCCCCCCGCCTTCGGCAACA
CATTCTCCACCCAGTCATGATGAGCGTGAAGTGAAGGCGGATAGCCCGGT
GGGTAGTGCTCAACATGCTTACTCACACGTTGAAGATCTGTCACCCGATC
TGGGGACAATTGGCGAGGCCGGCGAAAGGAGCGAAGACGGTGCTGTCAGC
GGCGACGAAGGCATCGGTGGTTGTAACGGTAACGGTATATTTATTACCAA
GAGAGACTACGACAACATTTCCGAGGAAGATGCCCCCAGCGACCTCGGCA
GCCCGCGGGCCAGCACTGCCATGCGTCTCGGCCTTACCAGCCCGGGTGGC
AGGGAAAAGCGGTCTATCAAAGGCTTACCGAGGGAGGAGAAAACACCTTT
CAACTTCAGTCGCCAATCTTCCCCCCGCCTTCGGCAACACATTCTCCACC
CAGTCATGATGAGCGTGAAGTGAAGGCGGATAGCCCGGTGGGTAGTGCTC
AACATGCTTACTCACACGTTGAAGATCTGTCACCCGATCTGGGGACAATT
GGCGAGGCCGGCGAAAGGAGCGAAGACGGTGCTGTCAGCGGCGACGAAGG
CATCGGTGGTTGTAACGGTAACGGTATATTTATTACCAAGAGAGACTACG
ACAACATTTCCGAGGAAGATGCCCCCAGGTTTGTCCCCACAGTAATCTTC
AGGGGGTCCCACCCTGTACGATCGGTGGGCTTTTCGTCGGACGGTGGAAT
GTTCGCGGCTGGAAGTAACGACCACACGCTGAGGGTTTGTCCCCACAGTA
ATCTTCAGGGGGTCCCACCCTGTACGATCGGTGGGCTTTTCGTCGGACGG
TGGAATGTTCGCGGCTGGAAGTAACGACCACACGCTGAGG
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