mRNA_H-elongata_contig132230.2313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132230.2313.1
Unique NamemRNA_H-elongata_contig132230.2313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Match: A0A6H5KGY7_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.700e-38
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 SLTASLNEKALQARALEQFLYSLPDVNQDGLITRFEFDKYMNEYKRTHPGLSDRDLPRFEDMDHNSNGHINFREARE 231
            SLTASLNEK +Q++ LEQFLYSLPD NQDGLITRFEFDKYMNEYKR HPGL+D DLPRFEDMDHN+NGHINF E  E
Sbjct:  144 SLTASLNEKVIQSKKLEQFLYSLPDTNQDGLITRFEFDKYMNEYKRAHPGLTDHDLPRFEDMDHNNNGHINFHEWEE 220
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BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Match: A0A7S2LGL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-8
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   61 YSLPDVNQDGLITRFEFDKYMNEYKRTHPGLSDRDLPRFEDMDHNSNGHINFREARE 231
            +  PDV+ D  I+R EF+ Y+  Y   +PGL+++D+P+FED DH+++G ++F E  E
Sbjct:  150 FKQPDVDGDDRISRAEFNHYVKNYLSNYPGLTEKDMPKFEDFDHDNDGSVSFSEYAE 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132230.2313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGY7_9PHAE1.700e-3883.12EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2LGL3_9STRA2.960e-842.11Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132230contigH-elongata_contig132230:81..1604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog35128.Thaps2171
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2E463@1,2SB4A@2759,2XC32@2836
COG Functional cat.Z
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-24_002230.1
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929785.2702882-CDS-H-elongata_contig132230:80..2031622929785.2702882-CDS-H-elongata_contig132230:80..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132230 81..203 -
1691679156.6882904-CDS-H-elongata_contig132230:80..2031691679156.6882904-CDS-H-elongata_contig132230:80..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132230 81..203 -
1622929785.288018-CDS-H-elongata_contig132230:1496..16041622929785.288018-CDS-H-elongata_contig132230:1496..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132230 1497..1604 -
1691679156.7002718-CDS-H-elongata_contig132230:1496..16041691679156.7002718-CDS-H-elongata_contig132230:1496..1604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132230 1497..1604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132230.2313.1prot_H-elongata_contig132230.2313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132230 81..1604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132230.2313.1

>prot_H-elongata_contig132230.2313.1 ID=prot_H-elongata_contig132230.2313.1|Name=mRNA_H-elongata_contig132230.2313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
SLTASLNEKALQARALEQFLYSLPDVNQDGLITRFEFDKYMNEYKRTHPG
LSDRDLPRFEDMDHNSNGHINFREARE
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mRNA from alignment at H-elongata_contig132230:81..1604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132230.2313.1 ID=mRNA_H-elongata_contig132230.2313.1|Name=mRNA_H-elongata_contig132230.2313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1524bp|location=Sequence derived from alignment at H-elongata_contig132230:81..1604- (Himanthalia elongata Himel1 dioecious)
TCTCTGACCGCGAGTCTGAACGAGAAGGCCTTGCAGGCGAGGGCCTTGGA
GCAGTTCCTCTACTCGTTACCGGACGTGAACCAGGATGGCCTCATCACGC
GCTTCGAGGTGCTTTGCTGGTAGTCTGCTGCATTGTATGTTATGGGTTGT
ACAGTATACGTTGTGTGATATATGCCCCCCCCCCCCCGCCCCACCGGGGA
TAAAAGGTACCTTCCCCCCCCCCGAGGAGGCGAAATATATTTTGTGCCAC
CTCTAGCGAAGTAGGAAATAGCGATTAGTCATCAGCGATTGACCATGTAG
GGACGATTCTCCGTATAACCGAAGGGCGCGTGGCATACTAAGGCGTTATT
TTATTAGTATGCCCCCTCTCTCTCTTTTTCTTGATAGCACACAGGGTGGT
TAGTAGCGACGATGACGCCGTAAGCTAGGTTTCTGTGAAGCTTTGCTAAT
AGATTGATATTTTCGAATATATCTTTGTTATTGTGTTGCCCCTCTTCGAG
AAATAGATAGAGCGGGGACAGGCATAAACCATCCCCTATGCCCTGGGAGG
TAGAACGGAGAGCGGACAGGGGGAACATACTCAAGCTTTTCACGTCTCGG
AACAGAGGAGGGCCTAGAATGTGTGTGTGTGTGTGTGCCTTTTTGTCTTG
TTTCAAGGACCCGATAGTTGATGGCACAGGAAATGAAATAAACACCCCCC
CCTCCCCCAGAAGGATGAAGACGCGCGACTCTCCCACTGCATTTTTCATG
CACCTACTTCGGCAGGCCCCACCAGCGTCACGAGTCAAGTTGTTTTGTTT
TGGCAGAAATATATACATTGCAAAAGAAATACCTGGCATATAGTATATAG
TATATTGATTTTCAAAAGTGTAGCGCTTGTTTGAGCTGCCTATCTGCCTC
CTGCCTTTCGCGTAATTGCCGTAGCACTCAAACGGGGTCATGCCACATTC
ACCCCCGGGGTTTGTTATTATACCACATGACCTGCGGCAGGGGTGGACCA
CCGGGGGACGACACCTGAAGTAGTCACAAATCAGTAGACCCGAGGGTGAA
GTGGTGTTGGCGTTCACGAGATGGCGGGTGAAGTGCCGGTCTATTGCTCT
ATTAACTGACGAGGAGGGAGGCGGGGGTGGGGTGGGGTGGAGAATTAGTT
TGGAAGAAGCGTCGGTCATGTCTTGGGGGTGATTTTTCCACTCCCAAGAG
CGAACGAAAATGATTACACCGTGGAAAGATTCGTCACGAGGGTTGGGAAA
CGCGCGCGCGCGCGCGTGAATGTGCGAGTGTAACGCGCGCACGCTCTGGC
CCATATGGTTGCTGCCGCCGGCGTAGCCCAAGCCGAGGTGCACCGCGCGG
AGTAATTCGCTTTCGTTCTTGTGCTACGTTATCGCCCTCGTGTGTCTGCA
GTTCGACAAGTACATGAACGAGTATAAGAGGACACACCCGGGGCTGTCGG
ATCGCGACCTTCCGCGGTTCGAGGACATGGACCACAATAGTAATGGCCAC
ATCAACTTCCGCGAGGCGCGTGAA
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Coding sequence (CDS) from alignment at H-elongata_contig132230:81..1604-

>mRNA_H-elongata_contig132230.2313.1 ID=mRNA_H-elongata_contig132230.2313.1|Name=mRNA_H-elongata_contig132230.2313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig132230:81..1604- (Himanthalia elongata Himel1 dioecious)
TCTCTGACCGCGAGTCTGAACGAGAAGGCCTTGCAGGCGAGGGCCTTGGA
GCAGTTCCTCTACTCGTTACCGGACGTGAACCAGGATGGCCTCATCACGC
GCTTCGAGTCTCTGACCGCGAGTCTGAACGAGAAGGCCTTGCAGGCGAGG
GCCTTGGAGCAGTTCCTCTACTCGTTACCGGACGTGAACCAGGATGGCCT
CATCACGCGCTTCGAGTTCGACAAGTACATGAACGAGTATAAGAGGACAC
ACCCGGGGCTGTCGGATCGCGACCTTCCGCGGTTCGAGGACATGGACCAC
AATAGTAATGGCCACATCAACTTCCGCGAGGCGCGTGAATTCGACAAGTA
CATGAACGAGTATAAGAGGACACACCCGGGGCTGTCGGATCGCGACCTTC
CGCGGTTCGAGGACATGGACCACAATAGTAATGGCCACATCAACTTCCGC
GAGGCGCGTGAA
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