prot_H-elongata_contig13221.2311.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13221.2311.1
Unique Nameprot_H-elongata_contig13221.2311.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length207
Homology
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.010e-32
Identity = 81/192 (42.19%), Postives = 105/192 (54.69%), Query Frame = 0
Query:   17 YVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAGTLTFDQHQN--IQTVAERFGVTKTSIIPSVAEE-KALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTK-LSAWVDADYGTCPDTRRSVSG 204
            YVDDLL+ + T          +   F +KD G+A   +G  I RN    T   HQ    +TV ERF +  ++ + +  E  K LSKS    T  ++  M   PYR  VG+LM  A  TRPD+ F   QL++F +NP P HWRAA++AL+YL  TR   +  GG        LSA+VDADY  CPDTRR VSG
Sbjct: 1672 YVDDLLIIAPTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSG 1863          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.400e-32
Identity = 80/192 (41.67%), Postives = 105/192 (54.69%), Query Frame = 0
Query:   17 YVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAGTLTFDQHQN--IQTVAERFGVTKTSIIPSVAEE-KALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTK-LSAWVDADYGTCPDTRRSVSG 204
            YVD LL+ ++T          +   F +KD G+A   +G  I RN    T   HQ    +TV ERF +  ++ + +  E  K LSKS    T  ++  M   PYR  VG+ M  A  TRPD+ F   QL++F +NPGP HWRAA++AL+YL  TR   +  GG        LSA+VDADY  CPDTRR VSG
Sbjct:  528 YVDGLLIIASTTSLVSSMKLSLSDRFHMKDLGEARDILGWQIERNRSERTLFLHQTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSG 719          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.950e-31
Identity = 78/192 (40.62%), Postives = 102/192 (53.12%), Query Frame = 0
Query:   17 YVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAGTLTFDQHQN--IQTVAERFGVTKTSIIPSVAE-EKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTK-LSAWVDADYGTCPDTRRSVSG 204
            YVDDLL+ + T          ++ CF +KD G+A   +G  I RN    T   HQ    +TV  RF +  +  + +  E    LSKS    T  ++  M   PYR  VG+LM  A  TRPD+ F   QL++F  NPGP HWRAA++ L+Y+  TR   +  GG        LSA+VDADY  C DTRR VSG
Sbjct:  263 YVDDLLIIAPTTSLVSSMKLSLFDCFQMKDLGEARDILGWQIERNRSARTIFLHQTRYCETVVTRFDMASSHPVHTPFECTTKLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSG 454          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.470e-30
Identity = 84/206 (40.78%), Postives = 119/206 (57.77%), Query Frame = 0
Query:    2 FRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRN--AGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKSD-SPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            FR+++  VVV++IV YVDD+LVA + + D E+ +  +   FP K+ G+  ++ GC I R+  AGTL   Q   I ++ ERF V  TS IP      A   +D  PQ + E  +  + P RE++G++M  +T +RPD+ FA   +A+  + P   HW A QK L YL  TRDL IT   + G G  L+ +VDA Y    D RRSVSG
Sbjct:  141 FRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIP------ATPGADLGPQREDE--EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSG 334          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.220e-30
Identity = 78/198 (39.39%), Postives = 111/198 (56.06%), Query Frame = 0
Query:    9 VVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNA--GTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            VVV++IV YVDD+LVA + + D E+ +  +   FP K+ G+  ++ GC I R+A  GTL   Q   I ++ ERF V  TS IP+        K +        ++  + P RE++G++M  +T +RPD+ FA   +A+  + P   HW A QK L YL  TRDL IT   + G G  L+ +VDA Y    D RRSVSG
Sbjct:    5 VVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLTVYVDASYANTDD-RRSVSG 191          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY)

HSP 1 Score: 123 bits (309), Expect = 2.440e-30
Identity = 72/202 (35.64%), Postives = 115/202 (56.93%), Query Frame = 0
Query:    6 LHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAG--TLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKA-LSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            + G V +++  ++DD+ +AS +++  +  V+++ S F ++D G   + +G  I R+    T++  Q Q I  + E +G++    + +  +  A LSK+ +PQT  E + MR++PY  +VGALM  A  TRPDI+FA   LA+FN NPGPTHW A +    YL  T DLR+  G        L+ + D+D+G   D  RS  G
Sbjct:   16 IRGDVRIIVPVFIDDMTLASKSRKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAELSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTHWIAVKHVFCYLKGTMDLRLHYGPSDVKEFFLT-YTDSDFGGERDNCRSTGG 216          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A5N6MC51_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MC51_9ASTR)

HSP 1 Score: 127 bits (319), Expect = 2.580e-30
Identity = 75/201 (37.31%), Postives = 117/201 (58.21%), Query Frame = 0
Query:   12 VVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNA--GTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKSDS------PQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            V++V YVDD+L+AS       ++ R + + F +KD G+ASY +G  I RN   GTL   Q   I+ + +RF + + S  PSVA    + K D+      P+++AE+D+MR IPY   VG+LM A   TRPDI +    L ++ +NPG  HW+AA+K L+YL  T++ ++T         ++  + D+D+  C D ++S SG
Sbjct:  384 VILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVA---PVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLRYLQGTKEYKLTY--RRSDDLEVIGYTDSDFAKCKDDKKSTSG 577          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.470e-30
Identity = 80/205 (39.02%), Postives = 116/205 (56.59%), Query Frame = 0
Query:    2 FRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRN--AGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            FR+++  VVV++IV YVDD+LVA + + D E+ +  +   FP K+ G+  ++ GC I R+  AGTL   Q   I ++ ERF V  TS IP+        K +        ++  + P RE++G++M  +T +RPD+ FA   +A+  + P   HW A QK L YL  TRDL IT   + G G  L+ +VDA Y    D RRSVSG
Sbjct:  205 FRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSG 398          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR)

HSP 1 Score: 126 bits (317), Expect = 4.910e-30
Identity = 70/191 (36.65%), Postives = 109/191 (57.07%), Query Frame = 0
Query:   17 YVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRN--AGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKA-LSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRRSVSG 204
            YVDD+++A+ T+ + +     + + F +K+ G+A + +G  I  +  + TL   Q + I  V ERF      ++ +  E    L+ + SP   AE  +M++  YR  +G L+   T TRPD+ +   QL++F  NPG  HW+AA + L+YL  TR+L I   G    G KL+A+ DAD+G+ PD RRSVSG
Sbjct:  899 YVDDMIIAARTREETQDVKTALKNAFKMKELGEAKFILGMEINHDYSSKTLMIKQTRYIDDVVERFKQKDAKVVVNPCESGLKLTSAQSPTAQAERMEMQRKLYRALIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKGTRELGIVYSGT-SSGVKLTAYTDADWGSNPDDRRSVSG 1088          
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Match: A0A6G0WNM5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNM5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.310e-30
Identity = 77/192 (40.10%), Postives = 101/192 (52.60%), Query Frame = 0
Query:   17 YVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDASYYVGCHITRNAGTLTFDQHQN--IQTVAERFGVTKTSIIPSVAE-EKALSKSDSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRDLRITCGGEPGGGTK-LSAWVDADYGTCPDTRRSVSG 204
            YVDDLL+ + T          ++  F +KD G+A   +G  I RN    T   HQ    +TV  RF +  +  + +  E    LSKS    T  ++  M   PYR  VG+LM  A  TRPD+ F   QL++F  NPGP HWRAA++ L+Y+  TR   +  GG        LSA+VDADY  C DTRR VSG
Sbjct:  187 YVDDLLIIAPTTSLVSSMKLSLFDRFQMKDLGEARDILGWQIERNRSARTLFLHQTRYCETVVTRFDMASSHPVHTPFECTTKLSKSQCASTPDDIAFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLENPGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSG 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13221.2311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W780_9STRA2.010e-3242.19Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0W6P6_9STRA8.400e-3241.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W2A7_9STRA3.950e-3140.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.470e-3040.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH1_9PHAE2.220e-3039.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GID0_9APHY2.440e-3035.64Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A5N6MC51_9ASTR2.580e-3037.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE4.470e-3039.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
W2WEK3_PHYPR4.910e-3036.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0WNM5_9STRA8.310e-3040.10Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 12..85
e-value: 1.4E-8
score: 34.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..206
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.634

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13221contigH-elongata_contig13221:3606..4226 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13221.2311.1mRNA_H-elongata_contig13221.2311.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13221 3108..4585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13221.2311.1 ID=prot_H-elongata_contig13221.2311.1|Name=mRNA_H-elongata_contig13221.2311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MFRRILHGVVVVVIVAYVDDLLVASATKRDEEQAVRDVYSCFPIKDPGDA
SYYVGCHITRNAGTLTFDQHQNIQTVAERFGVTKTSIIPSVAEEKALSKS
DSPQTDAEVDKMRQIPYRESVGALMLAATMTRPDILFAAHQLAKFNNNPG
PTHWRAAQKALQYLWRTRDLRITCGGEPGGGTKLSAWVDADYGTCPDTRR
SVSGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2