mRNA_H-elongata_contig132196.2309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132196.2309.1
Unique NamemRNA_H-elongata_contig132196.2309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132196.2309.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.380e-7
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  106 RLMEIIAFFDEWHDTLEQRKSEGGRAEE-DWEKHFITRESWFDLRLCI 246
            RL+EI+ FFD+W  TLE++    G  ++  W+KHFIT +SWFDLRL I
Sbjct:   95 RLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSI 142
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BLAST of mRNA_H-elongata_contig132196.2309.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.650e-5
Identity = 62/210 (29.52%), Postives = 81/210 (38.57%), Query Frame = 3 
Query:   15 GNYGRTSYEKRTRLNKWKSYVRSAESTI*G--------------------PPHGDHSVLRR---VARHPRA---KEIRRGKGRGRLGEALHNPRVVV*FAFMYPTHAMPARIFVSGDLISFA*TWEPTRIPQPTWRNHGPGWRTNNEACMDRRQTRLNASKNTSAGYDFNLASLRSRIMIAVTDEERKIPSRARSRNLPMAAVSPRFIAL 566
            G+YGRT +E+R ++NK K YV SAE  I                      PP G   V  +   + RH R      IR G G       L NP           T A      V GDL                   HG               +R N ++N  +G DFN++  R RIM+AVT        R+RSRN P A + PR+I++
Sbjct:  843 GDYGRTKFERRAKINKMKGYVTSAEDPILERLMEILRYFDDWNDMLQEFPPPTGGGDVGWKKHFITRHSRTLVCAHIRAGLG------TLRNP-----------TAAQAKERSVRGDLNRGL---------------HGG--------------SRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISV 1006
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132196.2309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE3.380e-754.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.650e-529.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132196contigH-elongata_contig132196:323..1485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size991
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132196.2309.1prot_H-elongata_contig132196.2309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132196 878..1105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.8117251-UTR-H-elongata_contig132196:322..5901622929784.8117251-UTR-H-elongata_contig132196:322..590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 323..590 +
1691679156.4738495-UTR-H-elongata_contig132196:322..5901691679156.4738495-UTR-H-elongata_contig132196:322..590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 323..590 +
1622929784.8264296-UTR-H-elongata_contig132196:762..8771622929784.8264296-UTR-H-elongata_contig132196:762..877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 763..877 +
1691679156.4830704-UTR-H-elongata_contig132196:762..8771691679156.4830704-UTR-H-elongata_contig132196:762..877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 763..877 +
1622929784.8550591-UTR-H-elongata_contig132196:1105..14851622929784.8550591-UTR-H-elongata_contig132196:1105..1485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 1106..1485 +
1691679156.50527-UTR-H-elongata_contig132196:1105..14851691679156.50527-UTR-H-elongata_contig132196:1105..1485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132196 1106..1485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.8404014-CDS-H-elongata_contig132196:877..11051622929784.8404014-CDS-H-elongata_contig132196:877..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132196 878..1105 +
1691679156.4944663-CDS-H-elongata_contig132196:877..11051691679156.4944663-CDS-H-elongata_contig132196:877..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132196 878..1105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132196.2309.1

>prot_H-elongata_contig132196.2309.1 ID=prot_H-elongata_contig132196.2309.1|Name=mRNA_H-elongata_contig132196.2309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MDRRQTRLNASKNTSAGYDFNLASLRSRIMIAVTDEERKIPSRARSRNLP
MAAVSPRFIALHGQPKKIANTLVRR*
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mRNA from alignment at H-elongata_contig132196:323..1485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132196.2309.1 ID=mRNA_H-elongata_contig132196.2309.1|Name=mRNA_H-elongata_contig132196.2309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-elongata_contig132196:323..1485+ (Himanthalia elongata Himel1 dioecious)
GATGAAAAACGTTAGGAAACTATGGTCGCACCAGCTATGAAAAGCGCACA
AGGTTGAATAAGTGGAAGAGTTATGTGAGGTCGGCGGAATCAACCATCTA
GGGGCCGCCTCATGGAGATCATAGCGTTCTTCGACGAGTGGCACGACACC
CTCGAGCAAAGGAAATCAGAAGGGGGAAGGGCCGAGGAAGACTGGGAGAA
GCACTTCATAACCCGCGAGTCGTGGTTTGATTTGCGTTTATGTATCCAAC
CCACGCAATGCCAGCCAGGTATGTTGGTTAGATGACGTCGAGGGAAAGGG
GTGCGGTCAAGATGCTTTGTTTGGCGCGGGAAATGAACTTCTTTGTGATT
CGTAAGTCACCTATTAAACGACGCGGATGATATTCACCGCCTTGCATATT
TATGTATTGCCACCCACTGCCCTGTTTAACGTCGGTGCAGGATATTTGTG
AGCGGAGATCTTATCTCATTCGCATGAACCTGGGAACCCACGAGAATTCC
GCAGCCCACATGGCGAAATCACGGTCCAGGCTGGCGGACCAACAACGAGG
CGTGCATGGACAGACGACAGACACGACTCAATGCCAGCAAGAACACTAGC
GCTGGATACGATTTCAACCTGGCCAGCCTGAGGAGTAGGATCATGATAGC
CGTAACGGACGAAGAGCGAAAAATTCCTAGTCGAGCACGTTCTAGGAATC
TCCCTATGGCAGCTGTGTCCCCGCGCTTCATTGCATTGCATGGTCAACCT
AAGAAGATTGCAAACACTCTCGTACGGAGATGACATGCGAATGATGACGT
TTTCAACATTTACTCGTAGATCAAGAGTTGACATGCAATGTTACCAGAAA
TATTGTTTTGTGCGATTTGTAAATCTTTGGGATAGATATCCGAAAACGAT
GCGACTTGTTGAGGGAGTTGTGCAAAAACACATAATCAAACGAACATTTT
CCCAATGATATCGAAGTGGTGACGACAATAAAGGCATAGCGATTCCAAGA
ATGCATCCGTTTCGTGGATTTCGACATGGATATGTGGGGGGCTATCGAAA
ATGATCCGATAAGAGAGATGAGGGGTTGCGTCCCATACCATTCGTAAAGG
AAAATATTACCATCATCGCGAGACGTCAATAAGAAAAAATGATAGAAAAC
TCATGTTTACATG
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Coding sequence (CDS) from alignment at H-elongata_contig132196:323..1485+

>mRNA_H-elongata_contig132196.2309.1 ID=mRNA_H-elongata_contig132196.2309.1|Name=mRNA_H-elongata_contig132196.2309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig132196:323..1485+ (Himanthalia elongata Himel1 dioecious)
ATGGACAGACGACAGACACGACTCAATGCCAGCAAGAACACTAGCGCTGG
ATACGATTTCAACCTGGCCAGCCTGAGGAGTAGGATCATGATAGCCGTAA
CGGACGAAGAGCGAAAAATTCCTAGTCGAGCACGTTCTAGGAATCTCCCT
ATGGCAGCTGTGTCCCCGCGCTTCATTGCATTGCATGGTCAACCTAAGAA
GATTGCAAACACTCTCGTACGGAGATGAATGGACAGACGACAGACACGAC
TCAATGCCAGCAAGAACACTAGCGCTGGATACGATTTCAACCTGGCCAGC
CTGAGGAGTAGGATCATGATAGCCGTAACGGACGAAGAGCGAAAAATTCC
TAGTCGAGCACGTTCTAGGAATCTCCCTATGGCAGCTGTGTCCCCGCGCT
TCATTGCATTGCATGGTCAACCTAAGAAGATTGCAAACACTCTCGTACGG
AGATGA
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