mRNA_H-elongata_contig13150.2274.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A016S1D2_9BILA (Reverse transcriptase domain-containing protein n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016S1D2_9BILA) HSP 1 Score: 67.0 bits (162), Expect = 5.240e-11 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 CIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
CIYLG ++ +LSAEI RRI+AGW+SF RY+ Y+ + + K + S V +LLYGCE+W +K L T R M
Sbjct: 732 CIYLGQKISFDGNLSAEITRRIQAGWSSFNRYQ--SYFTNRKIPMRFKRRLYVSCVEPSLLYGCETWVMRKGEMETLRTAQRKM 813
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A2G9V187_TELCI (Uncharacterized protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9V187_TELCI) HSP 1 Score: 60.5 bits (145), Expect = 1.440e-9 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 1 QTTSCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
+ +S IY G A+T +DLS EI RR RAGWT+F +Y+ ++ + V KA + N+ V AL+YG ++W+ K KL T R M
Sbjct: 9 EVSSYIYQGQAITMDNDLSIEIGRRRRAGWTTFNKYR-DVLTDRRLDARV-KARVFNTHVLPALIYGSKTWSTIKE-ERKLTTTQRAM 93
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A2H2JD05_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JD05_CAEJA) HSP 1 Score: 59.3 bits (142), Expect = 2.990e-9 Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 19 YLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKL 243
YLG + L+AE+ RRIRAGW +F + + P+ ++ +L + V A+ YGCE+WT K+ NN L
Sbjct: 25 YLGRTFADDGSLTAEVARRIRAGWAAFNAIRREVLQSPQK----IRNRLLTTTVIPAMTYGCETWTSKESDNNNL 95
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A0C2GGG5_9BILA (Uncharacterized protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2GGG5_9BILA) HSP 1 Score: 61.6 bits (148), Expect = 3.230e-9 Identity = 36/87 (41.38%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 10 SCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYH--PKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
S +Y G V+ S+DL+ EI RRI GW F K L PK KAEI N+ V A++YGCE+W P + +L T R M
Sbjct: 219 SYVYPGQEVSTSNDLANEISRRIEGGWLKFNEEKEVLLSKIAPKR-----KAEIFNTTVLSAMIYGCETWAPTRDERRRLETTARAM 300
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A016UTT3_9BILA (Reverse transcriptase domain-containing protein n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016UTT3_9BILA) HSP 1 Score: 60.5 bits (145), Expect = 8.280e-9 Identity = 37/87 (42.53%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 10 SCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLY--YHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
S + LG V S+DL+ EI RR + GW F K L PK + AEI N+ V A++YGCE+W P KV KL T R M
Sbjct: 179 SYVDLGQEVNTSNDLTCEILRRRKTGWLKFNEEKEVLLSKIDPKRN-----AEIFNTTVLPAMIYGCETWAPTKVEERKLETTVRAM 260
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A2G9V2L7_TELCI (Uncharacterized protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9V2L7_TELCI) HSP 1 Score: 56.6 bits (135), Expect = 4.260e-8 Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 10 SCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWT 216
S +YLG A+T +DL+ EI R +AGW +F +Y+ L L ++A++LN+ V AL+YG E+W+
Sbjct: 21 SYVYLGQAITMDNDLTIEIGHRHKAGWATFNKYRDVL---TDKRLDKIRAQVLNTHVLAALVYGSETWS 86
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A7I4Z1N2_HAECO (Reverse transcriptase domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I4Z1N2_HAECO) HSP 1 Score: 56.6 bits (135), Expect = 2.350e-7 Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 7 TSCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
T +YLG V+ + S EI RRIRAGW++F R+++ + + + K + + V A+LY CE+WT KK L R M
Sbjct: 525 TDFVYLGQMVSFGMNNSVEIQRRIRAGWSAFNRFRF--FLTNRRVPMRFKRRVYEACVEPAILYSCETWTMKKRDITMLKVAQRRM 608
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A2H2IZT8_CAEJA (Reverse transcriptase domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IZT8_CAEJA) HSP 1 Score: 55.8 bits (133), Expect = 3.630e-7 Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1
Query: 19 YLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKL 243
YLG + L+AEI RRIRAGW +F + + P+ ++ +L + V A+ YGCE+WT K+ +L
Sbjct: 157 YLGRTFADDGSLTAEIARRIRAGWAAFNAIRREVLQSPQK----IRNRLLTTTVIPAMTYGCETWTSKESGTKRL 227
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A2H2IXK3_CAEJA (Uncharacterized protein n=2 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IXK3_CAEJA) HSP 1 Score: 55.5 bits (132), Expect = 3.690e-7 Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query: 19 YLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKL 243
YLG + L+AE+ RRIRAGW +F + + P+ ++ +L + V A+ YGCE+WT K+ +L
Sbjct: 41 YLGRTFADDGSLTAEVARRIRAGWAAFNAIRREVLQSPQK----IRNRLLTTTVIPAMTYGCETWTSKESDTKRL 111
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Match: A0A183UI86_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UI86_TOXCA) HSP 1 Score: 55.1 bits (131), Expect = 4.960e-7 Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 1
Query: 19 YLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVLKAEILNSEVAKALLYGCESWTPKKVCNNKLHTVHRMM 264
YLG + ++ DRR RAGW +F RYK L + + L+A I N+ V A+LY CE+W KV K R M
Sbjct: 39 YLGRQMESNNCPDGGWDRRRRAGWIAFGRYKSVLT--DRTLSMKLRASIFNTTVVPAMLYACETWATTKVAEEKFAITERAM 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13150.2274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13150.2274.1 >prot_H-elongata_contig13150.2274.1 ID=prot_H-elongata_contig13150.2274.1|Name=mRNA_H-elongata_contig13150.2274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp QTTSCIYLGGAVTESSDLSAEIDRRIRAGWTSFTRYKWNLYYHPKASLLVback to top mRNA from alignment at H-elongata_contig13150:4613..4876- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13150.2274.1 ID=mRNA_H-elongata_contig13150.2274.1|Name=mRNA_H-elongata_contig13150.2274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig13150:4613..4876- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13150:4613..4876- >mRNA_H-elongata_contig13150.2274.1 ID=mRNA_H-elongata_contig13150.2274.1|Name=mRNA_H-elongata_contig13150.2274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig13150:4613..4876- (Himanthalia elongata Himel1 dioecious)back to top |