mRNA_H-elongata_contig130836.2231.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130836.2231.1
Unique NamemRNA_H-elongata_contig130836.2231.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A6H5JFW5_9PHAE (GB1/RHD3-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.620e-18
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M VN  TVD+VL  LGDE AVN++AIFGAARGGKSFLMNQLAG+D IFKIS
Sbjct:   53 MAVNMSTVDDVLGKLGDEGAVNVVAIFGAARGGKSFLMNQLAGQDDIFKIS 103
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: D8LC12_ECTSI (GBP5, guanylate-binding protein (Divergent) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC12_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.810e-17
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M VN+ TVD++L+ LGDE AVN++AIFGAARGGKSFLMNQLAG+D IFKIS
Sbjct:    1 MAVNKSTVDDILDKLGDEGAVNVVAIFGAARGGKSFLMNQLAGQDDIFKIS 51
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A7S3URQ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URQ4_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 1.990e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M V+Q   DEVL PLG +  +N+I+IFGAAR GKSFLMN L+G++ IF+IS
Sbjct:    9 MEVDQKVADEVLTPLGPDTNLNLISIFGAARQGKSFLMNLLSGQENIFQIS 59
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A835YY61_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY61_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.780e-10
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   25 DEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            + VL+PLGD+  VN+I+IFGAARGGKSFLMNQLA +  +F+IS
Sbjct:   50 ETVLQPLGDKVPVNLISIFGAARGGKSFLMNQLARRRDVFRIS 92
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: K3W7D1_GLOUD (GBP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7D1_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 8.930e-10
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M V+Q+   EVL+PLGDE  +N+I+IFGAAR GKSFLMN LA +  +FKIS
Sbjct:   39 MFVSQEAATEVLQPLGDE-QINLISIFGAARQGKSFLMNLLADQQDLFKIS 88
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A8K1CCQ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCQ0_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-9
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M V+ D    VL+PLGD+  +N+I+IFGAAR GKSFLMN LAG+  +FKIS
Sbjct:   35 MFVHPDAAKHVLQPLGDQ-PINLISIFGAARQGKSFLMNLLAGQQDLFKIS 84
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A2D4BS96_PYTIN (GBP domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS96_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 2.740e-9
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M V+ +   EVL+PLGDE  +N+I+IFGAAR GKSFLMN LA +  +FKIS
Sbjct:   43 MFVHPEAATEVLQPLGDE-PINLISIFGAARQGKSFLMNLLADQQDLFKIS 92
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A2D4CCJ3_PYTIN (GBP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCJ3_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 5.830e-9
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M V+ +   EVL+PLGDE  +N+I+IFGAAR GKSFLMN LA +  +FKIS
Sbjct:   43 MFVHPEAATEVLQPLGDE-PINLISIFGAARQGKSFLMNLLADQQDLFKIS 92
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A3R7W662_9STRA (GBP domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W662_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.820e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            M ++ +  + VLEPLG E  +N+I+IFGAAR GKSFLMN LA +  +FKIS
Sbjct:   36 MFISHEAAEHVLEPLG-ETPINLISIFGAARQGKSFLMNLLADQQDLFKIS 85
[Close]
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Match: A0A4D9D8U9_9STRA (GBP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8U9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.130e-8
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   10 NQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKIS 153
            +Q    EVL    D   +N+I+IFGAAR GKSFLMN LAG+D +FKIS
Sbjct:   81 DQRAAKEVLSKCSDTTPLNLISIFGAARQGKSFLMNMLAGEDRLFKIS 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130836.2231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFW5_9PHAE2.620e-1878.43GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
D8LC12_ECTSI5.810e-1776.47GBP5, guanylate-binding protein (Divergent) n=1 Ta... [more]
A0A7S3URQ4_HETAK1.990e-1160.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YY61_9STRA4.780e-1067.44SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
K3W7D1_GLOUD8.930e-1062.75GBP domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1CCQ0_PYTOL2.280e-960.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BS96_PYTIN2.740e-960.78GBP domain-containing protein n=2 Tax=Pythium insi... [more]
A0A2D4CCJ3_PYTIN5.830e-960.78GBP domain-containing protein n=1 Tax=Pythium insi... [more]
A0A3R7W662_9STRA3.820e-856.86GBP domain-containing protein n=2 Tax=Peronospora ... [more]
A0A4D9D8U9_9STRA7.130e-858.33GBP domain-containing protein n=2 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130836contigH-elongata_contig130836:1118..1270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog2880.D8LC12
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.2686362-CDS-H-elongata_contig130836:1117..12701622929777.2686362-CDS-H-elongata_contig130836:1117..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130836 1118..1270 +
1691679153.8234243-CDS-H-elongata_contig130836:1117..12701691679153.8234243-CDS-H-elongata_contig130836:1117..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130836 1118..1270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130836.2231.1prot_H-elongata_contig130836.2231.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130836 1118..1270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130836.2231.1

>prot_H-elongata_contig130836.2231.1 ID=prot_H-elongata_contig130836.2231.1|Name=mRNA_H-elongata_contig130836.2231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MRVNQDTVDEVLEPLGDECAVNIIAIFGAARGGKSFLMNQLAGKDGIFKI
S
back to top

mRNA from alignment at H-elongata_contig130836:1118..1270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130836.2231.1 ID=mRNA_H-elongata_contig130836.2231.1|Name=mRNA_H-elongata_contig130836.2231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig130836:1118..1270+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGTGAACCAAGACACAGTCGACGAAGTGCTGGAACCGCTGGGGGA
CGAGTGTGCCGTGAATATTATCGCGATTTTCGGCGCAGCGCGGGGCGGCA
AGAGCTTCCTGATGAACCAACTGGCGGGGAAAGACGGAATTTTCAAAATT
TCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig130836:1118..1270+

>mRNA_H-elongata_contig130836.2231.1 ID=mRNA_H-elongata_contig130836.2231.1|Name=mRNA_H-elongata_contig130836.2231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig130836:1118..1270+ (Himanthalia elongata Himel1 dioecious)
ATGCGCGTGAACCAAGACACAGTCGACGAAGTGCTGGAACCGCTGGGGGA
CGAGTGTGCCGTGAATATTATCGCGATTTTCGGCGCAGCGCGGGGCGGCA
AGAGCTTCCTGATGAACCAACTGGCGGGGAAAGACGGAATTTTCAAAATT
TCCATGCGCGTGAACCAAGACACAGTCGACGAAGTGCTGGAACCGCTGGG
GGACGAGTGTGCCGTGAATATTATCGCGATTTTCGGCGCAGCGCGGGGCG
GCAAGAGCTTCCTGATGAACCAACTGGCGGGGAAAGACGGAATTTTCAAA
ATTTCC
back to top