mRNA_H-elongata_contig130831.2230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130831.2230.1
Unique NamemRNA_H-elongata_contig130831.2230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130831.2230.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.010e-16
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 SRPNKACEAENCGLEACWGDPRFRPRYCARHKKQGNKLM 117
            S P KACE E C LEACWGDPRFRPRYCARHKKQGNKLM
Sbjct:  580 SGPVKACEVEGCTLEACWGDPRFRPRYCARHKKQGNKLM 618
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BLAST of mRNA_H-elongata_contig130831.2230.1 vs. uniprot
Match: A0A6H5K3I7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.990e-15
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   13 KACEAENCGLEACWGDPRFRPRYCARHKKQGNKLM 117
            KACE + C LEACWGDPRFRPRYCARHKKQGNKLM
Sbjct:  584 KACEGDGCTLEACWGDPRFRPRYCARHKKQGNKLM 618
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130831.2230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ5_ECTSI3.010e-1687.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3I7_9PHAE4.990e-1588.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130831contigH-elongata_contig130831:885..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.227071-CDS-H-elongata_contig130831:884..10011622929777.227071-CDS-H-elongata_contig130831:884..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130831 885..1001 +
1691679153.8133688-CDS-H-elongata_contig130831:884..10011691679153.8133688-CDS-H-elongata_contig130831:884..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130831 885..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130831.2230.1prot_H-elongata_contig130831.2230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130831 885..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130831.2230.1

>prot_H-elongata_contig130831.2230.1 ID=prot_H-elongata_contig130831.2230.1|Name=mRNA_H-elongata_contig130831.2230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
SRPNKACEAENCGLEACWGDPRFRPRYCARHKKQGNKLM
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mRNA from alignment at H-elongata_contig130831:885..1001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130831.2230.1 ID=mRNA_H-elongata_contig130831.2230.1|Name=mRNA_H-elongata_contig130831.2230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig130831:885..1001+ (Himanthalia elongata Himel1 dioecious)
TCGCGGCCAAACAAAGCTTGCGAGGCCGAAAATTGCGGCCTGGAAGCGTG
CTGGGGAGACCCCAGATTCCGTCCAAGATACTGCGCGCGCCATAAAAAGC
AAGGCAACAAGCTCATG
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Coding sequence (CDS) from alignment at H-elongata_contig130831:885..1001+

>mRNA_H-elongata_contig130831.2230.1 ID=mRNA_H-elongata_contig130831.2230.1|Name=mRNA_H-elongata_contig130831.2230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig130831:885..1001+ (Himanthalia elongata Himel1 dioecious)
TCGCGGCCAAACAAAGCTTGCGAGGCCGAAAATTGCGGCCTGGAAGCGTG
CTGGGGAGACCCCAGATTCCGTCCAAGATACTGCGCGCGCCATAAAAAGC
AAGGCAACAAGCTCATGTCGCGGCCAAACAAAGCTTGCGAGGCCGAAAAT
TGCGGCCTGGAAGCGTGCTGGGGAGACCCCAGATTCCGTCCAAGATACTG
CGCGCGCCATAAAAAGCAAGGCAACAAGCTCATG
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