mRNA_H-elongata_contig13058.2217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13058.2217.1
Unique NamemRNA_H-elongata_contig13058.2217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13058.2217.1 vs. uniprot
Match: A0A6H5LI16_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI16_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-13
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   22 GVGLAIRTSIIRALR-PSEFISDRLLKVILELWGRAKAVTFFVPYAPTENQNARNRHVFWTSLDRAVEEVARTEQLFVLMDANARTEGGR 288
            GVG+A++ ++ +A +  +E++  RL+ +  E+ G   AV F   YAPT+   A ++ +FW  LD  V  +   E+LFVLMDANA+T GG+
Sbjct:  124 GVGIAVQEALCKASQYTTEYVDKRLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKERLFVLMDANAQTGGGK 213
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BLAST of mRNA_H-elongata_contig13058.2217.1 vs. uniprot
Match: A0A0L8IGY6_OCTBM (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8IGY6_OCTBM)

HSP 1 Score: 64.7 bits (156), Expect = 5.640e-10
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    4 GKKKEGGVGLAIRTSIIRALRPSEFISDRLLKVILELWGRAKAVTFFVPYAPTENQNARNRHVFWTSLDRAVEEVARTEQLFVLMDANAR 273
            G+K+EGGVG AIR+++++ L   + I+DR++K+ + L    + VT F  YAPT + N  N H F+  L  ++  V   E+L VL D NAR
Sbjct:   15 GEKREGGVGFAIRSNLLKDLEQPQSINDRMMKLRIPL-SCGRFVTVFSIYAPTLSANEENIHAFYEKLRSSILSVPLNEKLVVLGDFNAR 103
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BLAST of mRNA_H-elongata_contig13058.2217.1 vs. uniprot
Match: A0A0L8HYL2_OCTBM (Uncharacterized protein (Fragment) n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8HYL2_OCTBM)

HSP 1 Score: 51.2 bits (121), Expect = 3.740e-5
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    7 KKKEGGVGLAIRTSIIRALR--PSEFISDRLLKVILELWGRAKAVTFFVPYAPTENQNARNRHVFWTSLDRAVEEVARTEQLFVL 255
            K++E GVG AIRT++++ L   P E ISDRL+ + + L G+   +T    YAPT       R +F+ +L + + +V R ++L +L
Sbjct:   67 KRRESGVGFAIRTALVKNLGSLPRE-ISDRLMLMRIPLQGKMH-LTLISAYAPTATYTLEQRELFYQNLTKVLRDVPRDDKLLIL 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13058.2217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LI16_9PHAE6.900e-1340.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0L8IGY6_OCTBM5.640e-1041.11Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0L8HYL2_OCTBM3.740e-536.47Uncharacterized protein (Fragment) n=1 Tax=Octopus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13058contigH-elongata_contig13058:6368..6694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.96359-CDS-H-elongata_contig13058:6367..66941622929775.96359-CDS-H-elongata_contig13058:6367..6694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13058 6368..6694 -
1691679153.2928708-CDS-H-elongata_contig13058:6367..66941691679153.2928708-CDS-H-elongata_contig13058:6367..6694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13058 6368..6694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13058.2217.1prot_H-elongata_contig13058.2217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13058 6368..6694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13058.2217.1

>prot_H-elongata_contig13058.2217.1 ID=prot_H-elongata_contig13058.2217.1|Name=mRNA_H-elongata_contig13058.2217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
GGKKKEGGVGLAIRTSIIRALRPSEFISDRLLKVILELWGRAKAVTFFVP
YAPTENQNARNRHVFWTSLDRAVEEVARTEQLFVLMDANARTEGGRRDRW
GARILKFSV
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mRNA from alignment at H-elongata_contig13058:6368..6694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13058.2217.1 ID=mRNA_H-elongata_contig13058.2217.1|Name=mRNA_H-elongata_contig13058.2217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig13058:6368..6694- (Himanthalia elongata Himel1 dioecious)
GGTGGGAAGAAAAAGGAAGGTGGAGTAGGGCTAGCTATTAGAACCTCCAT
CATACGTGCTTTACGCCCATCGGAGTTTATCAGTGATCGCCTGCTAAAGG
TTATACTTGAATTATGGGGTCGAGCCAAGGCCGTTACGTTTTTTGTGCCG
TATGCCCCCACTGAAAACCAGAATGCTAGGAATAGGCATGTATTTTGGAC
GAGCTTGGATAGGGCTGTGGAGGAGGTAGCTAGAACCGAACAGCTGTTCG
TGTTGATGGACGCTAACGCCCGCACGGAAGGAGGGAGAAGGGACAGGTGG
GGAGCAAGGATATTAAAATTCTCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig13058:6368..6694-

>mRNA_H-elongata_contig13058.2217.1 ID=mRNA_H-elongata_contig13058.2217.1|Name=mRNA_H-elongata_contig13058.2217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig13058:6368..6694- (Himanthalia elongata Himel1 dioecious)
GGTGGGAAGAAAAAGGAAGGTGGAGTAGGGCTAGCTATTAGAACCTCCAT
CATACGTGCTTTACGCCCATCGGAGTTTATCAGTGATCGCCTGCTAAAGG
TTATACTTGAATTATGGGGTCGAGCCAAGGCCGTTACGTTTTTTGTGCCG
TATGCCCCCACTGAAAACCAGAATGCTAGGAATAGGCATGTATTTTGGAC
GAGCTTGGATAGGGCTGTGGAGGAGGTAGCTAGAACCGAACAGCTGTTCG
TGTTGATGGACGCTAACGCCCGCACGGAAGGAGGGAGAAGGGACAGGTGG
GGAGCAAGGATATTAAAATTCTCGGTGGGTGGGAAGAAAAAGGAAGGTGG
AGTAGGGCTAGCTATTAGAACCTCCATCATACGTGCTTTACGCCCATCGG
AGTTTATCAGTGATCGCCTGCTAAAGGTTATACTTGAATTATGGGGTCGA
GCCAAGGCCGTTACGTTTTTTGTGCCGTATGCCCCCACTGAAAACCAGAA
TGCTAGGAATAGGCATGTATTTTGGACGAGCTTGGATAGGGCTGTGGAGG
AGGTAGCTAGAACCGAACAGCTGTTCGTGTTGATGGACGCTAACGCCCGC
ACGGAAGGAGGGAGAAGGGACAGGTGGGGAGCAAGGATATTAAAATTCTC
GGTG
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