mRNA_H-elongata_contig130430.2210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130430.2210.1
Unique NamemRNA_H-elongata_contig130430.2210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A6H5J9L3_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L3_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 8.150e-62
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    4 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            NFEYTPKPSFPGPFHIFNEPNEEA+IRRFF HV+ELRPQIIVTYNGD+FDWPFVD+RAK YGLDMEKEIGVGLQ+NGEYRGRC AHMDAIYWVKR
Sbjct:    2 NFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 96
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.340e-56
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            +NFEYTPKPSFPGPFHIFNEPNEEA+IRRFF HV+ELRPQIIVTYNGD+FDWPFVD+RAK YGLDMEKEIGVGLQ+NGEYRGRC AHMDAIYWVKR
Sbjct:  337 ENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 432
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.600e-41
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    4 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGV------GLQSNG--EYRGRCCAHMDAIYWVKR 288
            +FEYTPKPS+PGPFHIFNE  EE LIRRFF+    LRPQI+VTYNGD+FDWPF++ RA +YGLD+ KE+G+      G +++G  EYRGRCC H+DA +WV+R
Sbjct:  112 DFEYTPKPSYPGPFHIFNELTEEDLIRRFFSEYQRLRPQIVVTYNGDFFDWPFLEQRAAMYGLDIGKELGIERVGGNGKENSGGGEYRGRCCVHLDAFHWVQR 214
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.810e-41
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    4 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            +FEYTPKPSFPGPF IFNE NEE L+R+F +H+ ELRPQI VTYNGD+FDWPF++ R + YG++M KEIG+       YRGRC AH+D   WV R
Sbjct:   20 DFEYTPKPSFPGPFKIFNEANEEQLLRKFLSHIQELRPQIFVTYNGDFFDWPFLEKRLQKYGINMGKEIGIYKNREDVYRGRCSAHLDCFAWVNR 114
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7R9U2R1_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 5.970e-40
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            ++FEYTPKPS+PG F +FNE +EE L+RRF  H  E RPQI VTYNGD+FDWPF++ RAKVYG+D+  E+G+ LQ   E+RGRC  H+DA  WV R
Sbjct:   87 EDFEYTPKPSYPGVFTVFNEASEEGLLRRFLDHCREARPQIYVTYNGDFFDWPFIEQRAKVYGMDIRSELGIELQRE-EFRGRCAVHLDAFAWVNR 181
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A3M6VP32_9STRA (DNA polymerase epsilon catalytic subunit n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP32_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.560e-38
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 288
            Q+FEYTPK ++PGPF +FNE NEE L++RFF HV E +P I VTYNGD+FDWPF++ RA+VYG++M +EIGV L +  GEYRGRC  HMDA  WVKR
Sbjct:  361 QDFEYTPKVAYPGPFIVFNEENEEKLLKRFFEHVIEEQPHIFVTYNGDFFDWPFIETRAQVYGINMAREIGVSLDERTGEYRGRCSVHMDAFCWVKR 457
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2SRI6_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SRI6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.890e-38
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    4 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            +FEYTPKP +PGPF +FNE +E A + RFF H  ELRP I VTYNGD+FDWPFV+ RAKVYG++M  EIGV   S+G Y G C  HMD  +WV+R
Sbjct:  150 DFEYTPKPEYPGPFEVFNEADERATLERFFTHCKELRPNIWVTYNGDFFDWPFVETRAKVYGMNMHTEIGVRETSSGVYTGSCAVHMDCFHWVQR 244
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S1XYH8_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYH8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.110e-38
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   19 PKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 288
            PKPS+PG F +FNE NEEAL+RRFF H  ELRPQI VTYNGD+FDWPFV+ RA+VYG+D++ E+GV +   GEY G+C  H+DA  WV R
Sbjct:    1 PKPSYPGVFTVFNEENEEALLRRFFDHCRELRPQIYVTYNGDFFDWPFVEARAQVYGMDVKSELGVSVTRQGEYLGQCAVHLDAFAWVNR 90
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A484EGT0_BRELC (DNA polymerase epsilon catalytic subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT0_BRELC)

HSP 1 Score: 144 bits (362), Expect = 7.380e-38
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    4 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 288
            +FEYTPK  +PGPF +FNEPNEE L++RFF HV E +P I VTYNGD+FDWPF+D RA+V+G++M  E+G+ L + +GEYRGRC  HMDA  WVKR
Sbjct:  365 DFEYTPKAEYPGPFILFNEPNEEKLLKRFFEHVIEEKPHIFVTYNGDFFDWPFIDARAQVHGINMAYELGISLDERSGEYRGRCSVHMDAFCWVKR 460
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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A2P4Y878_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y878_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.340e-38
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 288
            Q+FEYTPK  +PGPF +FNE NEE L++RFF HV E +P I VTYNGD+FDWPF++ RA+V+G++M  EIGV L + +GEYRGRC  HMDA  WVKR
Sbjct:  364 QDFEYTPKEDYPGPFIVFNEENEEQLLKRFFEHVIEEKPHIFVTYNGDFFDWPFIEARAQVHGINMAHEIGVSLDERSGEYRGRCSVHMDAFCWVKR 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9L3_9PHAE8.150e-6291.58DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
D8LQC0_ECTSI1.340e-5690.63DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A7S2UHD4_9STRA2.600e-4163.11DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S2FZE0_9STRA6.810e-4163.16DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7R9U2R1_9STRA5.970e-4061.46DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A3M6VP32_9STRA1.560e-3864.95DNA polymerase epsilon catalytic subunit n=2 Tax=P... [more]
A0A7S2SRI6_9STRA1.890e-3862.11DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S1XYH8_9STRA6.110e-3864.44DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A484EGT0_BRELC7.380e-3863.54DNA polymerase epsilon catalytic subunit n=1 Tax=B... [more]
A0A2P4Y878_9STRA9.340e-3863.92DNA polymerase epsilon catalytic subunit (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130430contigH-elongata_contig130430:688..1571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.6e-48
Seed eggNOG ortholog2880.D8LQC0
Preferred namePOLE1
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG1798@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929775.1629102-CDS-H-elongata_contig130430:687..7981622929775.1629102-CDS-H-elongata_contig130430:687..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130430 688..798 -
1691679152.9831686-CDS-H-elongata_contig130430:687..7981691679152.9831686-CDS-H-elongata_contig130430:687..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130430 688..798 -
1622929775.182805-CDS-H-elongata_contig130430:1391..15711622929775.182805-CDS-H-elongata_contig130430:1391..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130430 1392..1571 -
1691679152.9939575-CDS-H-elongata_contig130430:1391..15711691679152.9939575-CDS-H-elongata_contig130430:1391..1571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130430 1392..1571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130430.2210.1prot_H-elongata_contig130430.2210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130430 688..1571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130430.2210.1

>prot_H-elongata_contig130430.2210.1 ID=prot_H-elongata_contig130430.2210.1|Name=mRNA_H-elongata_contig130430.2210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYF
DWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR*
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mRNA from alignment at H-elongata_contig130430:688..1571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130430.2210.1 ID=mRNA_H-elongata_contig130430.2210.1|Name=mRNA_H-elongata_contig130430.2210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig130430:688..1571- (Himanthalia elongata Himel1 dioecious)
CAGAACTTCGAGTACACGCCGAAGCCTAGCTTCCCGGGGCCGTTCCACAT
CTTCAACGAACCCAACGAGGAGGCCTTGATCAGACGATTCTTCGCGCACG
TCTCGGAGCTCAGGCCGCAGATTATCGTGACCTATAACGGGGACTATTTC
GACTGGCCATTCGTCGACGACCGAGCGAAGGTTTTTCTCTTTTTTTATTT
ATTTTATTTTTTACAAAAATGTTTTTCCTTTTTTCTTCTTCTGTGTACAC
CTTTGCTGAAAACCATGGTGATTCGATAGAAACAACCAGCAAAAGTCTTC
ACGCTTAGTACTCCCACGAGAAAGGGCGTTCTACGCGAAATTGCGTCCTC
CCCTTGGGATCGACCGCTGTTGTCTCTCCATACCACGGTAGAGATGGACG
CCGTCGCGAAAAGCGAGATAATCGAAAGGATCCCGGGAAGTAAGCACTAG
ATTCAGCCTGGGTTGAGATAATAATCAGGCTGACGTGGGACGGGACTGCC
GACCCCGTCTCCCGAGATAAAATTATCAGGCGCGAACGGGGACAGGGGAA
AATCATATTTCCTGTTGAGCTGACCACAAGCGGGAGGCAACCAATTCCGG
TTGATCTTTACTCTTCGGCAGAAAGCCCTTCGTCTTCGTCTCCGTCTCCG
AAACTGAACGCAGAGTCTTCCTGCCAGAACAAAACCGAACAAGAGACGTC
GCTCGAGGAGTTAGTTCCCTATCTTTCGCTTGGCTGCTGCTGCTGCTGCT
GATGATGATGTATGTCTCAACAGGTGTACGGCCTGGACATGGAAAAGGAG
ATCGGTGTGGGGCTGCAATCGAACGGAGAGTACCGCGGCCGATGCTGTGC
TCACATGGACGCGATCTACTGGGTGAAGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig130430:688..1571-

>mRNA_H-elongata_contig130430.2210.1 ID=mRNA_H-elongata_contig130430.2210.1|Name=mRNA_H-elongata_contig130430.2210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig130430:688..1571- (Himanthalia elongata Himel1 dioecious)
CAGAACTTCGAGTACACGCCGAAGCCTAGCTTCCCGGGGCCGTTCCACAT
CTTCAACGAACCCAACGAGGAGGCCTTGATCAGACGATTCTTCGCGCACG
TCTCGGAGCTCAGGCCGCAGATTATCGTGACCTATAACGGGGACTATTTC
GACTGGCCATTCGTCGACGACCGAGCGAAGCAGAACTTCGAGTACACGCC
GAAGCCTAGCTTCCCGGGGCCGTTCCACATCTTCAACGAACCCAACGAGG
AGGCCTTGATCAGACGATTCTTCGCGCACGTCTCGGAGCTCAGGCCGCAG
ATTATCGTGACCTATAACGGGGACTATTTCGACTGGCCATTCGTCGACGA
CCGAGCGAAGGTGTACGGCCTGGACATGGAAAAGGAGATCGGTGTGGGGC
TGCAATCGAACGGAGAGTACCGCGGCCGATGCTGTGCTCACATGGACGCG
ATCTACTGGGTGAAGCGGTGAGTGTACGGCCTGGACATGGAAAAGGAGAT
CGGTGTGGGGCTGCAATCGAACGGAGAGTACCGCGGCCGATGCTGTGCTC
ACATGGACGCGATCTACTGGGTGAAGCGGTGA
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