mRNA_H-elongata_contig129924.2183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129924.2183.1
Unique NamemRNA_H-elongata_contig129924.2183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: D8LLP5_ECTSI (SAC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP5_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.230e-64
Identity = 123/191 (64.40%), Postives = 138/191 (72.25%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQASGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSG-AGREDAPSDGVEGNNNAPAKE---------------GAAGLTGSLRHVWFDFHHE 525
            FDV+FVSRRSRLRQGTR+TRRG+DDGGNVANFVETEQ+  +++   R VTSHVQ+RGSIPV WSSPTNLRY PKVRIDP++EASLRALRRH+EDLI LY K GGG+VF+NLVDK KEQG LGEAF AAL+AV  G  G E  P +                            A  L GSLRHVWFDFHHE
Sbjct:  434 FDVMFVSRRSRLRQGTRYTRRGIDDGGNVANFVETEQSLLHED---RSVTSHVQIRGSIPVFWSSPTNLRYHPKVRIDPNQEASLRALRRHSEDLIRLYGKNGGGVVFINLVDKKKEQGALGEAFGAALKAVEDGDGGAEPVPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKLAGSLRHVWFDFHHE 621
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A7S3Y3D5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D5_HETAK)

HSP 1 Score: 142 bits (359), Expect = 1.320e-36
Identity = 83/176 (47.16%), Postives = 104/176 (59.09%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQASGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHEV 528
            FD+  VSRRS  RQGTRFTRRG+D  G VANFVETEQ    ++     VTSHVQVRGSIPV WSSPTNL+Y P ++I+ DR+  + A   H +DL   Y  +G  ++F+NL+DK K+Q +LG+AFD  +      AG             + P           L HVWFDFH E 
Sbjct:   33 FDLALVSRRSAFRQGTRFTRRGIDRAGQVANFVETEQLVATED---GQVTSHVQVRGSIPVFWSSPTNLKYTPPMKIEKDRKQRMDAFTLHVDDLTEKYGDKG--VIFINLIDKKKDQKRLGKAFDRTIRRKIILAGDS-------HDKKHTP-----------LSHVWFDFHAET 185
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A024UIL5_9STRA (SAC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIL5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.190e-31
Identity = 81/179 (45.25%), Postives = 102/179 (56.98%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQA----SGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
            FD+L++SRRS  RQGTRFT RG+D  GNVANFVETEQA     G +       TS VQ+RGSIPV+WSSP  L+Y PKV    + E    A + HAE+L+ LY    G ++ VNL+DK  EQ +LGEAF+                        NA A      +  ++R+VWFDFH E
Sbjct:  218 FDILYISRRSCRRQGTRFTMRGIDSEGNVANFVETEQALLFPDGRE-------TSFVQIRGSIPVVWSSPVTLKYAPKVYQRQELEKDTAAFQLHAEELMKLY----GRVILVNLIDKKTEQLKLGEAFEKTFA--------------------NASALN--THILANIRYVWFDFHRE 363
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: W4GBN0_9STRA (SAC domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBN0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.660e-31
Identity = 81/179 (45.25%), Postives = 101/179 (56.42%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQASGNKNIFLRFV----TSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
            FD+L++SRRS  RQGTRFT RG+D  GNVANFVETEQA       L F     TS VQ+RGSIPV+WSSP  L+Y PKV      +    A + HAE+L+ LY    G ++ VNL+DK  EQ +LGEAF+                  G     N         +  ++R+VWFDFHHE
Sbjct:  220 FDLLYISRRSCRRQGTRFTMRGIDSEGNVANFVETEQA-------LLFADGRETSFVQIRGSIPVVWSSPATLKYAPKVFQRAQADTDTAAFQLHAEELMKLY----GRVILVNLIDKKTEQLKLGEAFEKTF---------------GHASTLNTH-------ILANIRYVWFDFHHE 365
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A6G0W8P2_9STRA (SAC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8P2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.680e-31
Identity = 80/179 (44.69%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQA----SGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
            FD+L+VSRRS  RQGTRFT RG+D+ GNVANFVETEQA     G +       TS VQ+RGSIPV+WSSP  L+Y PKV      E +  A + HA +++  Y    G ++ VNL+DK KEQ +LGEAF+                        +A A +    +  ++R+VWFDFHHE
Sbjct:  216 FDLLYVSRRSCRRQGTRFTMRGIDEEGNVANFVETEQACLYPDGRE-------TSFVQIRGSIPVVWSSPVTLKYAPKVYQRNQLEPNTAAFQLHANEMMKYY----GRVIMVNLIDKKKEQLKLGEAFEKTF--------------------GHASALD--THILANIRYVWFDFHHE 361
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A7S2WKG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKG3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.560e-31
Identity = 76/174 (43.68%), Postives = 102/174 (58.62%), Query Frame = 1 
Query:    4 DVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQASGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
             +L +SRRS  RQGTRF R G++D G VANFVETEQ +    +     ++HVQ+RGS+P+ W  P +L+YRP +R+D D+E    AL +H   L  LY    G IVFVNL+DKTKEQG+LG+    +L  +             +     +P++         LRHVWFDFHHE
Sbjct:  122 SLLLISRRSAERQGTRFLR-GVNDQGQVANFVETEQVA---LVDGGAASAHVQIRGSVPLFWGHPAHLKYRPPLRLDTDQERHRLALEKHISALRQLY----GSIVFVNLIDKTKEQGELGKLLRHSLSTLAVR----------LRAERKSPSEPSP------LRHVWFDFHHE 271
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A485KIE6_9STRA (Aste57867_7500 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIE6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.100e-31
Identity = 78/179 (43.58%), Postives = 104/179 (58.10%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQA----SGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
            FD+L++SRRS  RQGTRFT RG+DD GNVANFVETEQA     G +       TS VQ+RGSIPV+WSSP +L+Y PKV      E    A + HA++++  Y    G ++ VNL+DK  EQ +LGEAF+                        +A  ++    +  ++R+VWFDFHHE
Sbjct:  216 FDLLYISRRSCRRQGTRFTMRGIDDEGNVANFVETEQACLFADGRE-------TSFVQIRGSIPVVWSSPVSLKYAPKVYQRNQLEKDTAAFQLHADEVMKFY----GRVIMVNLIDKKTEQLRLGEAFEKTF--------------------GHASVQD--THILANVRYVWFDFHHE 361
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A1Z5KQV8_FISSO (SAC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQV8_FISSO)

HSP 1 Score: 128 bits (321), Expect = 4.750e-31
Identity = 84/191 (43.98%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQ-------ASGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLR-YRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGG-------IVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHEV 528
            +D + V+RRSR R G RFTRRG D  G VANF ETEQ       + GN  + L  V SHVQ RGSIP+ WSSPT+++ YRP+VRI  +  A  RALR+H  D    YA            ++ VNLVDK  +QG+LG AFDA L+AV             ++     P ++      G++ H+WFDFH EV
Sbjct:  333 YDQVLVTRRSRFRAGARFTRRGADATGAVANFAETEQILFFWNHSKGNVRV-LDNVCSHVQTRGSIPLRWSSPTDIKTYRPRVRIGTNPLAHARALRQHLVDQARYYAALWSAGKSVSPSLLLVNLVDKKSDQGRLGRAFDAVLKAV-------------LDVYAEQPDQKIPWLAPGNIEHLWFDFHAEV 509
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: H3HCH5_PHYRM (SAC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCH5_PHYRM)

HSP 1 Score: 127 bits (320), Expect = 6.540e-31
Identity = 80/179 (44.69%), Postives = 100/179 (55.87%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQA----SGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYAKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHE 525
            F +L++SRRS  RQG RFT RG+DD GNVANFVETEQ      G +       TS VQ+RGSIPV WSSP  ++Y PKV    D E  + A +RHA  L+ LY    G ++FVNL+DK KEQ +LGEA    +                      A A    + +  ++R VWFDFHHE
Sbjct:  504 FRILYISRRSCKRQGMRFTMRGIDDDGNVANFVETEQICIFDDGRQ-------TSFVQIRGSIPVFWSSPVTMKYAPKVYHAGDSERDVAAFQRHAYQLMGLY----GRVLFVNLIDKKKEQLKLGEAMAKTV----------------------ADAATKDSHILAAVRLVWFDFHHE 649
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BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Match: A0A1Z5J6I0_FISSO (SAC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6I0_FISSO)

HSP 1 Score: 127 bits (319), Expect = 8.830e-31
Identity = 84/193 (43.52%), Postives = 109/193 (56.48%), Query Frame = 1 
Query:    1 FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQ-------ASGNKNIFLRFVTSHVQVRGSIPVLWSSPTNLR-YRPKVRIDPDREASLRALRRHAED------LIWLY---AKRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNNNAPAKEGAAGLTGSLRHVWFDFHHEV 528
            +D + V+RRSR R GTRFTRRG D  G VANF ETEQ       + GN  + L  V SHVQ RGSIP+ WSSPT+++ YRP+VRI  +  A  RALR+H  D       +W     A     ++ VNLVDK  +QG+LG AFDA L+A+             ++     P +       G ++H+WFDFH EV
Sbjct:  333 YDQVLVTRRSRFRAGTRFTRRGADATGAVANFAETEQILFFWHHSEGNVRV-LDNVCSHVQTRGSIPLRWSSPTDIKTYRPRVRIGTNPLAHARALRQHLLDQARYFAALWSTTTDAPANPSLLLVNLVDKNSDQGRLGRAFDAVLKAI-------------LDVYAEQPDRTIPWLAPGYIKHLWFDFHAEV 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129924.2183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP5_ECTSI2.230e-6464.40SAC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3Y3D5_HETAK1.320e-3647.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024UIL5_9STRA1.190e-3145.25SAC domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4GBN0_9STRA1.660e-3145.25SAC domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A6G0W8P2_9STRA1.680e-3144.69SAC domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2WKG3_9STRA2.560e-3143.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KIE6_9STRA3.100e-3143.58Aste57867_7500 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1Z5KQV8_FISSO4.750e-3143.98SAC domain-containing protein n=1 Tax=Fistulifera ... [more]
H3HCH5_PHYRM6.540e-3144.69SAC domain-containing protein n=1 Tax=Phytophthora... [more]
A0A1Z5J6I0_FISSO8.830e-3143.52SAC domain-containing protein n=1 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129924contigH-elongata_contig129924:167..1233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue5.8e-57
Seed eggNOG ortholog2880.D8LLP5
Preferred nameSACM1L
KEGG rclassRC00078
KEGG koko:K21797
KEGG ReactionR11680
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
GOsGO:0000139,GO:0000226,GO:0000902,GO:0000904,GO:0001700,GO:0001932,GO:0001933,GO:0002009,GO:0002178,GO:0003674,GO:0003824,GO:0004438,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005797,GO:0005886,GO:0005887,GO:0005911,GO:0005938,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007391,GO:0007399,GO:0007409,GO:0007411,GO:0008037,GO:0008038,GO:0008088,GO:0008150,GO:0008152,GO:0008328,GO:0008610,GO:0008654,GO:0009058,GO:0009506,GO:0009605,GO:0009611,GO:0009628,GO:0009651,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009888,GO:0009892,GO:0009932,GO:0009966,GO:0009968,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010970,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016198,GO:0016199,GO:0016311,GO:0016331,GO:0016787,GO:0016788,GO:0016791,GO:0017059,GO:0019220,GO:0019222,GO:0019637,GO:0019867,GO:0021700,GO:0022008,GO:0022622,GO:0023051,GO:0023057,GO:0030030,GO:0030054,GO:0030154,GO:0030173,GO:0030176,GO:0030182,GO:0030258,GO:0030424,GO:0030425,GO:0030427,GO:0030705,GO:0031090,GO:0031122,GO:0031175,GO:0031211,GO:0031224,GO:0031226,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031520,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0031985,GO:0032268,GO:0032269,GO:0032281,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032989,GO:0032990,GO:0032991,GO:0034593,GO:0034595,GO:0034596,GO:0034702,GO:0034703,GO:0035339,GO:0035618,GO:0035619,GO:0035838,GO:0036092,GO:0036477,GO:0040007,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042578,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043408,GO:0043409,GO:0043812,GO:0043813,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045017,GO:0045936,GO:0046328,GO:0046329,GO:0046474,GO:0046486,GO:0046488,GO:0046664,GO:0046839,GO:0046856,GO:0046907,GO:0048364,GO:0048468,GO:0048469,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048598,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051286,GO:0051641,GO:0051649,GO:0052744,GO:0052866,GO:0055044,GO:0060074,GO:0060255,GO:0060429,GO:0060560,GO:0061564,GO:0065007,GO:0070302,GO:0070303,GO:0071683,GO:0071695,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0080147,GO:0090404,GO:0090406,GO:0090407,GO:0090558,GO:0090627,GO:0097435,GO:0097447,GO:0097458,GO:0097485,GO:0098588,GO:0098590,GO:0098791,GO:0098796,GO:0098797,GO:0098802,GO:0098805,GO:0098827,GO:0098878,GO:0099111,GO:0099402,GO:0099568,GO:0106018,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1901576,GO:1902494,GO:1902495,GO:1902531,GO:1902532,GO:1905392,GO:1905961,GO:1990234,GO:1990351
EggNOG free text desc.phosphatidylinositol-4-phosphate phosphatase activity
EggNOG OGsCOG5329@1,KOG1889@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Exons3
Model size528
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129924.2183.1prot_H-elongata_contig129924.2183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129924 167..1233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.1309366-CDS-H-elongata_contig129924:166..4281622929772.1309366-CDS-H-elongata_contig129924:166..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 167..428 -
1691679151.7754147-CDS-H-elongata_contig129924:166..4281691679151.7754147-CDS-H-elongata_contig129924:166..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 167..428 -
1622929772.1486442-CDS-H-elongata_contig129924:587..7101622929772.1486442-CDS-H-elongata_contig129924:587..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 588..710 -
1691679151.791925-CDS-H-elongata_contig129924:587..7101691679151.791925-CDS-H-elongata_contig129924:587..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 588..710 -
1622929772.1621652-CDS-H-elongata_contig129924:1090..12331622929772.1621652-CDS-H-elongata_contig129924:1090..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 1091..1233 -
1691679151.7996533-CDS-H-elongata_contig129924:1090..12331691679151.7996533-CDS-H-elongata_contig129924:1090..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129924 1091..1233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129924.2183.1

>prot_H-elongata_contig129924.2183.1 ID=prot_H-elongata_contig129924.2183.1|Name=mRNA_H-elongata_contig129924.2183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
FDVLFVSRRSRLRQGTRFTRRGLDDGGNVANFVETEQASGNKNIFLRFVT
SHVQVRGSIPVLWSSPTNLRYRPKVRIDPDREASLRALRRHAEDLIWLYA
KRGGGIVFVNLVDKTKEQGQLGEAFDAALEAVTSGAGREDAPSDGVEGNN
NAPAKEGAAGLTGSLRHVWFDFHHEV
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mRNA from alignment at H-elongata_contig129924:167..1233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129924.2183.1 ID=mRNA_H-elongata_contig129924.2183.1|Name=mRNA_H-elongata_contig129924.2183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-elongata_contig129924:167..1233- (Himanthalia elongata Himel1 dioecious)
TTCGACGTACTGTTCGTGTCAAGGCGGAGCCGGTTGAGACAGGGAACCCG
TTTCACGCGGCGGGGGTTGGATGACGGGGGTAACGTGGCCAACTTCGTCG
AGACGGAGCAGGCGAGTGGGAATAAAAATATATTCTTGAGATTGTGTGGT
TGTATGTGTAGTTCTTCCACTGCAACCCTCCCCCCCCCTCTCCACCCACT
TATTCGAATGACGTTAGCTCAGCCTCGGGCAATAGCCCTCCCGCGCTTTC
GGTTTTATCTACGTCGTGCCCCCCTGTATAAATCAAGGCGCACAACAATG
GGGATATTTTTCGCTACCTATTTACTTACCTACACAGAGGGTTTTTATAA
CGTTTCCCGTGCCTGCCGTAGAATTAGAATCCCAGTCCAACTTTGCGCGC
GTGTGTTGCTCGCCGTCGATCCCGCCCAGTCGCTGACATCCTCCGAGCAT
TACGAACGCCCTATCTTGTCTTTTGACCCTCCCCCCCCGGAACCGATCAG
GCCCTGCTCTACGACGACCACAGCGTGACGTCCCACGTGCAAGTCAGGGG
CTCCATACCCGTCCTGTGGAGCTCTCCAACCAACCTCCGCTATCGCCCTA
AGGTTCGGATTGACCCGGACCGGGAAGCTTCGCTGCGGGCTTTAAGGTGG
GGTGTGGGTGTGATGCTATTGCTGGGGGTTTTTGTGTGTGGCGAGCCTTC
CGCCTTCGGTTGATTCCTTCGTTTCCCATCCATCTCCCGTCCCCTTACGA
AGCACGCCGCCCTCGATAATCCGCCACCTCCTCCTCCCCCAACTCTCACT
CACAGACGACACGCGGAAGACCTGATCTGGTTGTACGCTAAGCGGGGCGG
GGGAATCGTTTTCGTCAATCTCGTGGACAAGACAAAGGAACAGGGCCAAC
TCGGAGAGGCTTTCGACGCGGCTCTTGAGGCGGTGACAAGCGGAGCTGGT
CGAGAAGACGCTCCCTCCGATGGGGTGGAGGGAAACAACAACGCCCCTGC
AAAAGAGGGGGCGGCCGGCCTCACCGGATCCCTGAGGCACGTCTGGTTCG
ACTTTCACCACGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig129924:167..1233-

>mRNA_H-elongata_contig129924.2183.1 ID=mRNA_H-elongata_contig129924.2183.1|Name=mRNA_H-elongata_contig129924.2183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig129924:167..1233- (Himanthalia elongata Himel1 dioecious)
TTCGACGTACTGTTCGTGTCAAGGCGGAGCCGGTTGAGACAGGGAACCCG
TTTCACGCGGCGGGGGTTGGATGACGGGGGTAACGTGGCCAACTTCGTCG
AGACGGAGCAGGCGAGTGGGAATAAAAATATATTCTTGAGATTTTCGACG
TACTGTTCGTGTCAAGGCGGAGCCGGTTGAGACAGGGAACCCGTTTCACG
CGGCGGGGGTTGGATGACGGGGGTAACGTGGCCAACTTCGTCGAGACGGA
GCAGGCGAGTGGGAATAAAAATATATTCTTGAGATTCGTGACGTCCCACG
TGCAAGTCAGGGGCTCCATACCCGTCCTGTGGAGCTCTCCAACCAACCTC
CGCTATCGCCCTAAGGTTCGGATTGACCCGGACCGGGAAGCTTCGCTGCG
GGCTTTAAGCGTGACGTCCCACGTGCAAGTCAGGGGCTCCATACCCGTCC
TGTGGAGCTCTCCAACCAACCTCCGCTATCGCCCTAAGGTTCGGATTGAC
CCGGACCGGGAAGCTTCGCTGCGGGCTTTAAGACGACACGCGGAAGACCT
GATCTGGTTGTACGCTAAGCGGGGCGGGGGAATCGTTTTCGTCAATCTCG
TGGACAAGACAAAGGAACAGGGCCAACTCGGAGAGGCTTTCGACGCGGCT
CTTGAGGCGGTGACAAGCGGAGCTGGTCGAGAAGACGCTCCCTCCGATGG
GGTGGAGGGAAACAACAACGCCCCTGCAAAAGAGGGGGCGGCCGGCCTCA
CCGGATCCCTGAGGCACGTCTGGTTCGACTTTCACCACGAGGTGACGACA
CGCGGAAGACCTGATCTGGTTGTACGCTAAGCGGGGCGGGGGAATCGTTT
TCGTCAATCTCGTGGACAAGACAAAGGAACAGGGCCAACTCGGAGAGGCT
TTCGACGCGGCTCTTGAGGCGGTGACAAGCGGAGCTGGTCGAGAAGACGC
TCCCTCCGATGGGGTGGAGGGAAACAACAACGCCCCTGCAAAAGAGGGGG
CGGCCGGCCTCACCGGATCCCTGAGGCACGTCTGGTTCGACTTTCACCAC
GAGGTG
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