mRNA_H-elongata_contig129919.2182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129919.2182.1
Unique NamemRNA_H-elongata_contig129919.2182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig129919.2182.1 vs. uniprot
Match: A0A6H5K4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.320e-10
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  280 TWLGRLVHHIDSSLSQHERNSCVVLGGSFAKFSPNPEMRSAPLHTNNHRPAEASPHEHLWGIDHRACDPRATSHATWSGQSLLGLALE 543
            T  GR V + + +L + ER + +VL GS+AKFS NPEMR   L + +   AEASP + +WGI HRA  P A   + W G +LLG+AL+
Sbjct:  137 TQYGRAVRNSNQTLWEQEREN-IVLTGSYAKFSQNPEMRLHLLGSGDKLLAEASPWDLIWGIGHRADHPDACRPSRWRGLNLLGIALQ 223
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BLAST of mRNA_H-elongata_contig129919.2182.1 vs. uniprot
Match: UPI001AE579AA (NADAR family protein n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001AE579AA)

HSP 1 Score: 59.7 bits (143), Expect = 2.160e-7
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:  256 PTTLKNKTTWLGRLVHHIDSSLSQHERNSCVVLGGSFAKFSPNPEMRSAPLHTNNHRPAEASPHEHLWGIDHRACDPRATSHATWSGQSLLG 531
            P  ++ K+  LGR V      + +  R++ VV G S AK+S NP++ +  L T N R  +ASP + +WGI   A DPRA   A W G +LLG
Sbjct:   60 PEPVRQKS--LGRRVRGFAEPVWEGARHAIVVTG-SLAKYSQNPDLLAILLATGNTRLVQASPIDRVWGIGLAADDPRAADPAQWRGLNLLG 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129919.2182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4Y3_9PHAE1.320e-1046.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001AE579AA2.160e-740.22NADAR family protein n=1 Tax=Azospirillum rugosum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129919contigH-elongata_contig129919:943..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog28444.JODQ01000007_gene5322
Preferred nameybiA
KEGG koko:K09935
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGs2HQRT@201174,4EJ1R@85012,COG3236@2,COG5113@1
COG Functional cat.O
Best tax levelStreptosporangiales
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size822
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129919.2182.1prot_H-elongata_contig129919.2182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129919 1168..1497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.0426502-UTR-H-elongata_contig129919:942..11671622929772.0426502-UTR-H-elongata_contig129919:942..1167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129919 943..1167 +
1691679151.746995-UTR-H-elongata_contig129919:942..11671691679151.746995-UTR-H-elongata_contig129919:942..1167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129919 943..1167 +
1622929772.082878-UTR-H-elongata_contig129919:1497..17641622929772.082878-UTR-H-elongata_contig129919:1497..1764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129919 1498..1764 +
1691679151.7658594-UTR-H-elongata_contig129919:1497..17641691679151.7658594-UTR-H-elongata_contig129919:1497..1764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129919 1498..1764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929772.0656252-CDS-H-elongata_contig129919:1167..14971622929772.0656252-CDS-H-elongata_contig129919:1167..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129919 1168..1497 +
1691679151.7576282-CDS-H-elongata_contig129919:1167..14971691679151.7576282-CDS-H-elongata_contig129919:1167..1497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129919 1168..1497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129919.2182.1

>prot_H-elongata_contig129919.2182.1 ID=prot_H-elongata_contig129919.2182.1|Name=mRNA_H-elongata_contig129919.2182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MLVSFPSSWSPTTLKNKTTWLGRLVHHIDSSLSQHERNSCVVLGGSFAKF
SPNPEMRSAPLHTNNHRPAEASPHEHLWGIDHRACDPRATSHATWSGQSL
LGLALELAF*
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mRNA from alignment at H-elongata_contig129919:943..1764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129919.2182.1 ID=mRNA_H-elongata_contig129919.2182.1|Name=mRNA_H-elongata_contig129919.2182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=822bp|location=Sequence derived from alignment at H-elongata_contig129919:943..1764+ (Himanthalia elongata Himel1 dioecious)
ACTAGACGCGACAGCTCTTTTTCACCTATAGCCCCCGCTATGCTCAGCAT
ATGACGCCCATGGCTCAACTAATGAGTACATCAACGATGTCCTAGTAGTC
CCCTTTTCGTACCCTCCTTAGGTTTACTCTCTACGAACGAACGCCCTCGC
CATTCATCGTGGATCGTGCATGCTGTAAATAGGCAGGACAGTGCACGATG
ACCTCTAAAGCTTGCTTGGTTGACCATGCTTGTGTCCTTCCCATCCTCAT
GGTCACCAACGACCCTCAAGAACAAAACTACTTGGCTTGGCCGTCTGGTT
CACCATATTGACTCCAGCCTTTCGCAACATGAACGCAATTCTTGCGTCGT
CCTTGGAGGTAGCTTTGCGAAGTTCTCACCAAACCCCGAGATGCGTTCAG
CCCCCCTTCATACCAACAACCACCGCCCCGCCGAAGCCAGCCCTCATGAG
CATTTGTGGGGCATTGATCATCGCGCGTGCGACCCCCGTGCCACTTCCCA
TGCCACTTGGAGCGGTCAAAGCCTTCTAGGCCTCGCCCTTGAACTTGCCT
TCTAGATGCTTCAAGTTGCCTTCCAAGCCTATCCGGACAGACCCTTCCCC
TCCTATGAGCGTCATCGCCGTTCGTTGTAACGCCCGTTATTTTTGCGCCG
AACGATACGGCTTCCAGAGTTTTGACGCTCTCCACCATGATAGCCACATA
TAACAACCTATTGGTCAGATACGTAGGCAACTATCAATCGTAGTGAGGAA
TGTATCTGGTCATTGCTCCACTATTTTCAAACATTGGAGCAAGTACAGTG
ACCTAATTAAAATCTCTTTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig129919:943..1764+

>mRNA_H-elongata_contig129919.2182.1 ID=mRNA_H-elongata_contig129919.2182.1|Name=mRNA_H-elongata_contig129919.2182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig129919:943..1764+ (Himanthalia elongata Himel1 dioecious)
ATGCTTGTGTCCTTCCCATCCTCATGGTCACCAACGACCCTCAAGAACAA
AACTACTTGGCTTGGCCGTCTGGTTCACCATATTGACTCCAGCCTTTCGC
AACATGAACGCAATTCTTGCGTCGTCCTTGGAGGTAGCTTTGCGAAGTTC
TCACCAAACCCCGAGATGCGTTCAGCCCCCCTTCATACCAACAACCACCG
CCCCGCCGAAGCCAGCCCTCATGAGCATTTGTGGGGCATTGATCATCGCG
CGTGCGACCCCCGTGCCACTTCCCATGCCACTTGGAGCGGTCAAAGCCTT
CTAGGCCTCGCCCTTGAACTTGCCTTCTAGATGCTTGTGTCCTTCCCATC
CTCATGGTCACCAACGACCCTCAAGAACAAAACTACTTGGCTTGGCCGTC
TGGTTCACCATATTGACTCCAGCCTTTCGCAACATGAACGCAATTCTTGC
GTCGTCCTTGGAGGTAGCTTTGCGAAGTTCTCACCAAACCCCGAGATGCG
TTCAGCCCCCCTTCATACCAACAACCACCGCCCCGCCGAAGCCAGCCCTC
ATGAGCATTTGTGGGGCATTGATCATCGCGCGTGCGACCCCCGTGCCACT
TCCCATGCCACTTGGAGCGGTCAAAGCCTTCTAGGCCTCGCCCTTGAACT
TGCCTTCTAG
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