mRNA_H-elongata_contig129841.2178.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 6.930e-19 Identity = 56/147 (38.10%), Postives = 79/147 (53.74%), Query Frame = 3
Query: 132 KTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEW--FVAVKSDVAGR---RVIPIEIKVMASLYNLGRAAGANNVAMLSGMSETTVRATFNTFCRKMVEDLHNVHVRLPEGDDLTEVM 557
+ KR R V R + ML L DP+TREAKQFR+R R+P+ F LV K G W F + ++ GR R IP+E KV+A L LGR ++V+ ++GM E TV F+ F + + V VR+P D+L ++M
Sbjct: 48 RPKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIM 194
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.400e-18 Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 3
Query: 105 WMDETEEPPKTKRTRRVFGRRPCEDTEFGIMLAN-EPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEW--FVAVKSDVAGRRV---IPIEIKVMASLYNLGRAAGANNVAMLSGMSETTVRATFNTFCRKMVEDLHNVHVRLPEGDDLTEVM 557
+ D TEEP KR R V+ R ++ + IML E AL DPTT++A+ FR+R R+P+ +F ELVK K W F +D+ GR IP+E+KV LGR +++ LS +SE T++ F+ F ++ + HV+ P+G L E++
Sbjct: 43 FADATEEP-SAKRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKV------LGRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEIL 192
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A835ZAS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.560e-17 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 3
Query: 120 EEPPKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEWFVAVKSDVAGRRVIPIEIKVMASLYNLG 404
+ P+ KR RRV+ R T + ML NE LLDPT+REAK+FR+R RLP+ +F+ELV ++ W +DVAGR IP+E+KV +L G
Sbjct: 30 DSTPRRKRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADADVAGRPCIPLELKVHCTLVAHG 124
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.570e-17 Identity = 56/147 (38.10%), Postives = 80/147 (54.42%), Query Frame = 3
Query: 132 KTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEW--FVAVKSDVAGR---RVIPIEIKVMASLYNLGRAAGANNVAMLSGMSETTVRATFNTFCRKMVEDLHNVHVRLPEGDDLTEVM 557
+ KR R V R + ML L DP+TREAKQFR+R R+P+ F LV K G W F + ++ GR R IP+E KV+A L LGR ++V+ ++GM E TV F+ F + ++ V VR+P D+L ++M
Sbjct: 48 RPKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIM 194
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.440e-17 Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 3
Query: 111 DETEEPPKTKRTRRVFGRRPCEDTEF--GIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEW--FVAVKSDVAGR---RVIPIEIKVMASLYNLGRAAGANNVAMLSGMSETTVRATFNTFCRKMVEDLHNVHVRLPEGDDLTEVM 557
D + P+ KR V RP D +L L DP+TREAKQFR+R R+P+ F LV K G+W F + ++ GR R IP+EIKV+A L LGR ++V+ ++GM E TV F+ F + + V VR+P +L E+M
Sbjct: 41 DGCDGEPRPKRRLTV---RPRADYALPRARVLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKEIM 193
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 7.740e-17 Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 3
Query: 111 DETEEPPKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEW--FVAVKSDVAGR---RVIPIEIKVMASLYNLGRAAGANNVAMLSGMSETTVRATFNTFCRKMVEDLHNVHVRLPEGDDLTEVM 557
D +E P+ K R V R + ML L DP+TREAKQFR+R R+P+ F LV K G+W F + ++ GR R IP+EI V L LGR ++V+ ++GM E TV F+ F + + V VR+P D+L E+M
Sbjct: 7 DGCDEEPRPKCRRTVRPRADDRALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDV---LRILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNEDELKEIM 157
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A835ZBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.570e-15 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 3
Query: 120 EEPPKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEWFVAVKSDVAGRRVIPIEIK 377
+ P+ KR RRV+ R T + ML NE LLDPT+REAK+FR+R RLP+ +F+ELV ++ W +DVAGR IP+E+K
Sbjct: 94 DSTPRRKRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADADVAGRPCIPLELK 179
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A835YZ80_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ80_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.340e-15 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 3
Query: 120 EEPPKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEWFVAVKSDVAGRRVIPIEIKVMASLYNLG 404
+ P+ KR RRV+ R T + ML NE LLDPT+REAK+FR+R RLP+ +F+ELV ++ W +DVAGR IP+E+KV +L G
Sbjct: 761 DSTPRRKRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADADVAGRPCIPLELKVHCTLVAHG 855
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5KGJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.780e-14 Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 3
Query: 24 IQHWFTVVAA---GEELLGCRKGGAGGGSGWMDETEEPPKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEWFVAVKSDVAGRRVIPIEIKVM 383
+ W V+ + G+EL G GGGS KRTRRV R P F + E L +P +REAK FR+R R+P+Q F EL++ K+ +WF K DVAGR IP+E+KVM
Sbjct: 25 VSTWRVVLRSFPDGDEL---EDEGLGGGS----------PVKRTRRVLPR-PDYRASFWWRMLGETGLKEPVSREAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKKDVAGRMCIPVELKVM 133
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Match: A0A6H5KL26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL26_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 7.890e-12 Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 3
Query: 129 PKTKRTRRVFGRRPCEDTEFGIMLANEPALLDPTTREAKQFRKRMRLPFQVFQELVKCAKQGEWFVAVKSDVAGRRVIPIEI 374
P KR RRV R P F + E L +P +RE K FR+R R+P+Q F ELV+ K+ +WF K DVAGR IP+E+
Sbjct: 66 PPVKRARRVLPR-PDYRASFWWRMLGETGLKEPASREGKLFRRRFRIPYQFFTELVELVKEKKWFPMRKQDVAGRMCIPVEL 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129841.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig129841.2178.1 >prot_H-elongata_contig129841.2178.1 ID=prot_H-elongata_contig129841.2178.1|Name=mRNA_H-elongata_contig129841.2178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MALGSNVIQHWFTVVAAGEELLGCRKGGAGGGSGWMDETEEPPKTKRTRRback to top mRNA from alignment at H-elongata_contig129841:2..1578- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig129841.2178.1 ID=mRNA_H-elongata_contig129841.2178.1|Name=mRNA_H-elongata_contig129841.2178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1577bp|location=Sequence derived from alignment at H-elongata_contig129841:2..1578- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig129841:2..1578- >mRNA_H-elongata_contig129841.2178.1 ID=mRNA_H-elongata_contig129841.2178.1|Name=mRNA_H-elongata_contig129841.2178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig129841:2..1578- (Himanthalia elongata Himel1 dioecious)back to top |