mRNA_H-elongata_contig12977.2172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12977.2172.1
Unique NamemRNA_H-elongata_contig12977.2172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: D7G8H9_ECTSI (VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H9_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 5.180e-113
Identity = 206/329 (62.61%), Postives = 244/329 (74.16%), Query Frame = 1
Query:  214 MSTGTYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTS------TSLDGNQRYISLNSGGVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESD-AIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGN 1179
            M TG +A+YA GSGT A+TFIYTV+ GD T+ LDAWDA  +G+LSALDVRYAGNFGYLRR ST PTTD DLTLP PG  GSLS    + +DT V+ V++++TSLADG YGVG++I LLV FTS      T+L+ +   I LNSGG A YN GNGT+ L+FLYTVGEGES+  LD AVV SDVT+TTT++L ++ AIFD   E+PAV+TLPKPG G S     NI+IDT PPLV EVTS L+DG YGPG  VEI +KY   V V G PRL LDLGD DG A +  ++  TN+TL FVYVVREGDSTADLDYT PFALE+  P+N T   N
Sbjct:   72 MDTGKFADYAFGSGTRAITFIYTVQEGDETEALDAWDAPAHGELSALDVRYAGNFGYLRRTSTWPTTDSDLTLPEPGSSGSLSGGNVVVVDTKVARVIAVNTSLADGVYGVGEEIPLLVTFTSAVSVNSTALNESLPSILLNSGGTALYNGGNGTAVLEFLYTVGEGESSGGLDTAVVGSDVTATTTILLPAEGAIFDAALEAPAVVTLPKPG-GES-----NIIIDTEPPLVLEVTSTLADGYYGPGHEVEILIKYTAPVVVYGVPRLRLDLGDADGYASFEALKDGTNNTLVFVYVVREGDSTADLDYTSPFALEL--PQNDTTALN 392          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A0A1C0VUR0_9CYAN (DUF4347 domain-containing protein n=1 Tax=Oscillatoriales cyanobacterium USR001 TaxID=1880991 RepID=A0A1C0VUR0_9CYAN)

HSP 1 Score: 192 bits (487), Expect = 4.100e-50
Identity = 140/375 (37.33%), Postives = 199/375 (53.07%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTG---TYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGVAF---YNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFAL 1140
            SLGAN+ +VI T  P++ ++++T     G Y VG  I + + F++ V    NV+  P+L ++TG   T   Y+SGSG+  +TF YTV +GD+T  LD          +AL++    N G ++ A+T+  T   LTLP P    SL A  ++ +DTT  ++ SI+++L DGTY VGQ I + V FT          ++L +GG      Y  GNGT+ L F YTV  G ++ DLD         ST  L L    I D    + A +TLP P    SLG  + +VIDT  P +  +TS L+DG Y  GQ++ I V +   V V GTP+L L  G       Y  + G+  +TL F Y V  GD++ DLDY    AL
Sbjct: 1009 SLGANKALVIDTTAPTITSITSTLT--DGTYSVGQVIPITVTFTENV----NVSGTPQLTLATGGAGTPVNYSSGSGSNTLTFNYTVAAGDTTTDLDYLST------AALNL----NGGTIKDAATNNAT---LTLPAPAAANSLGANKALVIDTTAPTITSITSTLTDGTYSVGQVIPITVTFTENVNVTGTPQLTLATGGAGTPVNYTSGNGTNTLTFEYTVAAGNTSTDLDYL-------STAALALNGGTIKDAATNN-ATLTLPAPAAANSLGANKALVIDTTAPTITSITSTLTDGTYSVGQIIPITVTFTENVNVTGTPQLTLATGGAGTPVNY--ISGNGTNTLTFEYTVAAGDTSTDLDYLSTAAL 1354          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: UPI00187D56BA (DUF4347 domain-containing protein n=1 Tax=Candidatus Magnetaquicoccus inordinatus TaxID=2496818 RepID=UPI00187D56BA)

HSP 1 Score: 189 bits (479), Expect = 4.960e-49
Identity = 146/369 (39.57%), Postives = 198/369 (53.66%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTY---AEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGV---AFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDY 1122
            SLG N+ IVI T  PSV ++S T     G Y VGD I V + FS+ V ++      P L + TGT    A + SGSG++ +TF YTV++GDST  LD + A T   L         N G ++ A+ +  T   LTL TPG   SL    +I +DT   +V S+S+S A+GTY  GQ I + V F+          I+L +G       Y  G+G++AL F YTV  G+ T+DLD +       S+T L L S +I D    + A +TL  PG   SLG+ +NI++  AP  V  V++  +DG Y  G  + + V +   +TV GTP L L+ G ND NA Y    G T  TL F Y V+ GDST DLDY
Sbjct: 1393 SLGDNKAIVIDTTAPSVSSVSATTA--DGSYKVGDVIAVTVTFSEAV-SVVTTGGTPTLTLETGTTDRNASFVSGSGSDTLTFHYTVQAGDSTSDLD-YTATTALAL---------NGGTIKDAAGNNAT---LTLATPGAANSLGNNKAILIDTAAPTVSSVSSSTANGTYYAGQSINVTVNFSEAVTVTGTPQITLETGSTDRTVNYVSGSGSAALLFTYTVQSGDITSDLDYS-------SSTALALNSGSIKD-SAGNDATLTLAAPGAANSLGNAKNIIVALAP-SVSSVSASSADGSYKAGDTINVTVTFTEAITVTGTPYLTLETGTNDRNATYSSGSGST--TLTFAYSVQAGDSTTDLDY 1734          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: UPI0011428B41 (DUF4347 domain-containing protein n=1 Tax=Magnetospirillum sp. 15-1 TaxID=1979370 RepID=UPI0011428B41)

HSP 1 Score: 180 bits (456), Expect = 5.160e-46
Identity = 144/392 (36.73%), Postives = 204/392 (52.04%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTY---AEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGV---AFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAI 1191
            SLG  + IVI    P+V  ++++     G Y VGD I V++ FS+ V     VT  P+L + TGT     +YASGSGT ++TF YTV++GD+T  LD     + G L       A N G ++ A+ +   D  LTL +PG   SL    +I +D  V +V ++++S ADG+Y VG  I + V F+          ++L +G       Y  G+GTS+L F YTV  G++TADLD         ST  L L    I D      A +TL  PG   SLG+ + IVID   P V  VTS  ++G Y  G  + + V ++  VTV GTP+L L+ G  D   +Y    G  + +L F Y V+ GD+TADLDY    AL ++      A GN + +
Sbjct:  629 SLGNAKAIVIDGVAPTVSGVTSSTA--DGSYKVGDTISVQVNFSESV----TVTGTPQLTLETGTTDRTVDYASGSGTNSLTFTYTVQAGDTTADLDYI---STGAL-------ALNGGTIKDAAGN---DATLTLASPGAANSLGNAKAIVVDGVVPTVSAVTSSTADGSYKVGDTISVQVDFSENVTVTGTPQLTLETGTTDRTINYASGSGTSSLTFTYTVQAGDTTADLDYI-------STGALALNGGTIKDAAGND-ATLTLASPGAANSLGNAKAIVIDGVVPTVSGVTSSTANGSYKVGDTISVQVNFSESVTVTGTPQLTLETGTTDRTVDY--TSGSGSSSLTFTYTVQAGDTTADLDYISTSALVLNGGSIKDAVGNDATL 991          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: UPI00069F4C71 (Ig-like domain-containing protein n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI00069F4C71)

HSP 1 Score: 177 bits (448), Expect = 5.000e-45
Identity = 141/392 (35.97%), Postives = 200/392 (51.02%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTG---TYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGV---AFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAI 1191
            SLG N + VI    P+V  +++T P   G Y  GD I +++ F++ V     VT  P+L + TG      +YASGSGT+ +TF YTV++GD++  LD   A      SAL    A N G +  A+ +      L LP PG   SL A  SI +DT    V +++++  +GTY +G  I + V F+          ++L +GG      Y  G+GT  L F YTV  G++ ADLD          T  L L + A+ D      AV+TLP PG   SLG  R++VID   P V  V+S  + G Y  G  + I V++   V V GTP+L L+ G  D   +Y    G   DTL F Y V+ GD++ DLDY    AL ++    +   GNS+A+
Sbjct:  382 SLGDNCDYVIDGIQPTVAGVASTSP--AGSYKAGDTISIQITFTEAVF----VTGTPQLTLETGGTDRAIDYASGSGTDTLTFTYTVQAGDTSLDLDYLSA------SAL----AFNGGAIEDAAGNSAV---LALPEPGAANSLGANESIVIDTGAPVVNAVNSTTDNGTYKIGDVISVQVSFSEAVTVSGTPQLTLETGGTDRTVDYASGSGTDTLTFTYTVQAGDTAADLDYI-------GTAALSLNAGAVTDAAGND-AVLTLPSPGAAGSLGANRDLVIDGVQPTVAGVSSTSAAGTYRTGDTISIQVQFTEGVVVTGTPQLTLESGSTDRTVDY--ASGSGTDTLTFTYTVQAGDASLDLDYLGTSALSLNGGTIADDAGNSAAL 744          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A0A3N7D3G3_9SPHI (Uncharacterized protein n=1 Tax=Pedobacter sp. KBW06 TaxID=2153359 RepID=A0A3N7D3G3_9SPHI)

HSP 1 Score: 170 bits (430), Expect = 1.430e-42
Identity = 134/384 (34.90%), Postives = 187/384 (48.70%), Query Frame = 1
Query:   40 GANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAI 1191
            G N    + T+V SV + +       G Y +GD I + + FS     + NVT  P L ++TG  A Y+ G+GT  +TF YTV SG ST  LD + + T   L+   ++ AG+            TD  LTL  PG   SL    +I +D    ++ S +++ A+G Y  G  I + + FT          ++LNSG    Y  G+GTS L F YTVG  +++ADLD         STT L L    I D    S A +TL  PG   SLG  +NIVID   PLV  V S L +G Y    ++ + + ++ +VTV GTP L L+ G   G A Y  + G  +  L F Y V    S ADLD     AL ++      A GN++ +
Sbjct:  256 GVNPIFQLGTNVSSVTSSTA-----NGTYKIGDLITINVTFS----TIVNVTGTPLLSLNTGANASYSDGTGTNTLTFNYTVASGQSTPDLD-YASTTALSLNGGTIKDAGS------------TDATLTLAAPGAANSLGNNKAIVIDGITPTIASANSTTANGAYKAGDLININLNFTEAVTVTGTPQLALNSGATVNYTSGSGTSTLTFNYTVGPTDASADLDYI-------STTALSLNGGTIKDAAGNS-ATLTLAAPGAANSLGANKNIVIDNTAPLVSSVNSSLPNGTYKINDVIPVTINFSEVVTVTGTPTLGLNSG---GTASY--VSGSGSSALVFNYTVALNQSIADLDQASTTALALAGGTIKDAAGNNATL 604          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A0A3S3QSX8_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacterium cerinum TaxID=2502784 RepID=A0A3S3QSX8_9FLAO)

HSP 1 Score: 169 bits (429), Expect = 1.950e-42
Identity = 143/385 (37.14%), Postives = 196/385 (50.91%), Query Frame = 1
Query:   40 GANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFT-STSLDGNQRYISLNSGGVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAI 1191
            G N    + T+V +V   STT     G Y  GD I V + FS     + NVT  P L ++TG  A Y+ G+GT  +TF YTV SG S+  LD     T+    AL      N G ++ A++   TD  LTL TPG   SL    +I +DT   +V S++++  +GTY  G  I + + F+ + ++ G  R I+LNSG    Y +G+GTS L F YTVG G+++ADLD   +   +       L   AI D    S A + LP PG   SLG  +NI+IDTA P V  V S L +G Y  G ++ I V ++  VTV GTP L L+ G   G A Y    G T   L F Y V    + ADLD     AL ++        GN++ +
Sbjct:  271 GVNPIFQLGTNVSNVT--STTA---NGTYKTGDVIVVNVTFS----TIVNVTGTPLLSLNTGANASYSGGTGTNTLTFDYTVASGQSSADLD----YTSTTALAL------NGGTIKDAAS---TDATLTLATPGAANSLGNNKAIVIDTIAPTVTSVNSTTPNGTYKAGDLINININFSEAVTVTGTPR-IALNSGVAVNYVNGSGTSTLNFNYTVGTGQNSADLDYFTITGPID------LSGAAIKDAAGNS-ATLILPAPGAPNSLGGNKNIIIDTASPEVSSVNSTLPNGTYKIGDLLPITVNFSETVTVTGTPTLSLNSG---GTASYVSGSGTT--ALIFNYTVGLNQAVADLDQASTTALVLAGGTIKDVVGNNATL 620          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A0A2E4BCV6_9FLAO (Cadherin domain-containing protein (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E4BCV6_9FLAO)

HSP 1 Score: 164 bits (416), Expect = 1.040e-40
Identity = 128/370 (34.59%), Postives = 194/370 (52.43%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGT---YAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSG---GVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYT 1125
            SLGAN++I+I T  P+VV++++ K    G Y V D I + + FS+ V     VT  P+L + TGT      YASGSG+ A+ F YTV SG ++  LD          SAL +    N G +  A+ + +   +LTL  PG   SL A  +I +DT   ++ S++++ ++GTY +G +I + + F+          ++L +G    V  Y+ G+G + L F YTV EG  ++D            T+ L L +  I D+   S AV+TL  PG+  SLG     +ID   P+V  V++  S+  Y  G  + I V ++ +V V GTP+L L+ G +D    Y    G T  TL F Y + EG ++ DLDYT
Sbjct: 1510 SLGANKSIIIDTATPTVVSVNSDK--SNGIYNVEDIIGITVNFSEAVV----VTGTPQLTLETGTNDAVVNYASGSGSNALLFYYTVASGHNSADLDY------ASTSALGL----NGGSINDAAGNTS---NLTLAAPGQTNSLGANKAIIIDTFSPTISSVTSTSSNGTYNIGDEINISITFSEVVNVXGSPQLTLETGTSDAVVNYSSGSGGAVLTFTYTVAEGHLSSDXXYI-------GTSXLALNNGTIKDLSGNS-AVLTLSSPGSSGSLGANAAXIIDGVVPVVSSVSTTTSNNSYKIGDAIAINVVFSEVVNVSGTPQLTLETGTSDAVVNYSSGSGGT--TLTFXYTISEGHTSGDLDYT 1850          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A0A4U1GFA6_9SPHI (T9SS type B sorting domain-containing protein n=2 Tax=Pedobacter hiemivivus TaxID=2530454 RepID=A0A4U1GFA6_9SPHI)

HSP 1 Score: 164 bits (415), Expect = 1.330e-40
Identity = 133/380 (35.00%), Postives = 181/380 (47.63%), Query Frame = 1
Query:   40 GANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTYAEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYISLNSGGVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGN 1179
            G N    + T+V  V + +       G Y +GD I + + FS  V    NVT  P L ++TG    Y+ G+GT  +TF YT+ SG S+  LD + A T   L+   ++  GN            TD  LTL  PG   SL    +I +D  V +V S ++S A+G Y  G  I + + F+ T        ++LNSG    Y+ G+GTS L F YTV   +++ADLD        TST  L L    + D      A +TL  PG   SL   +NIVID   P+V  V S L++G Y  G ++ + V ++  VTV GTP L L+ G   G A Y    G T   L F Y V    S ADLD     AL ++      A GN
Sbjct:  256 GTNPIFQLGTNVSGVTSSTA-----NGTYKIGDVIAINVTFSTVV----NVTGTPTLSLNTGATVNYSGGTGTNTLTFNYTIASGQSSADLD-YSATTALSLNGGTIKDVGN------------TDATLTLAAPGAANSLGNNKAIVVDGIVPTVTSANSSTANGAYKAGDAIVINLNFSETITVTGTPQLALNSGTTVNYSSGSGTSTLTFNYTVQPTDASADLD-------YTSTAALSLNGGTLKDAAGND-ATLTLAAPGAANSLAANKNIVIDNTVPVVSSVNSSLANGTYKIGDLIPVTVDFSEAVTVTGTPTLSLNSG---GTASYASGSGST--ALVFNYTVALNQSIADLDQASTTALSLAGGTIKDAAGN 600          
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Match: A4CY56_SYNPV (VCBS protein n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY56_SYNPV)

HSP 1 Score: 162 bits (411), Expect = 4.670e-40
Identity = 138/398 (34.67%), Postives = 209/398 (52.51%), Query Frame = 1
Query:   34 SLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDVKLWFSKPVEALANVTKAPRLRMSTGTY---AEYASGSGTEAMTFIYTVKSGDSTDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQGSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGNQRYI---SLNSGGV---AFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTSTTTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEVTSPLSDGQYGPGQMVEIFVKYNTLV---TVIGTPRLWLDLGDNDGNAEYHGMRGDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAI 1191
            SLG N  +VI  + P+V  + +T       YG+GD I++ + FS+ V  +      P L++ TGT    A + SGSGT  +TF YTV+ GD++  LD   +      +AL++    N G +  A+ +   +  LTL  PG  GSL    ++ +DTT  +V  +S++ AD +YG+G  I L V F+   +      I    L +G +   A +  G+GT+ L F YTV EG+++ADLD         S+T L L   +I D    + A++TL  PG   SLGD   +VIDT  P V  V+S  +D  YG G  + + V ++  V   T +G P L L+ G  D  A +  + G   +TL F Y V+EGD++ADLD     ALE++    + A GN++ +
Sbjct: 2036 SLGDNAALVIDGNQPTVTGVDSTNADVS--YGIGDFINLTVSFSEAV-VVDTTVGIPTLQLETGTIDRKAIFVSGSGTNTLTFQYTVQEGDTSADLDQLSS------TALEL----NGGSIADAAGN---NAILTLAAPGDTGSLGDNAALVIDTTRPTVTGVSSTNADVSYGIGDFINLTVSFSEAVVVDTTVGIPTLQLETGTIDRKAIFVSGSGTNTLTFQYTVQEGDTSADLDQL-------SSTALELNGGSIADAAGNN-AILTLAAPGDTGSLGDNAALVIDTTRPTVTGVSSTNADVSYGIGDFINLTVSFSEAVVVDTTVGIPTLQLETGTIDRKAIF--VSGSGTNTLTFQYTVQEGDTSADLDQLSSTALELNGGSIADAAGNNAIL 2407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12977.2172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8H9_ECTSI5.180e-11362.61VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A1C0VUR0_9CYAN4.100e-5037.33DUF4347 domain-containing protein n=1 Tax=Oscillat... [more]
UPI00187D56BA4.960e-4939.57DUF4347 domain-containing protein n=1 Tax=Candidat... [more]
UPI0011428B415.160e-4636.73DUF4347 domain-containing protein n=1 Tax=Magnetos... [more]
UPI00069F4C715.000e-4535.97Ig-like domain-containing protein n=1 Tax=Caenimon... [more]
A0A3N7D3G3_9SPHI1.430e-4234.90Uncharacterized protein n=1 Tax=Pedobacter sp. KBW... [more]
A0A3S3QSX8_9FLAO1.950e-4237.14T9SS type A sorting domain-containing protein n=1 ... [more]
A0A2E4BCV6_9FLAO1.040e-4034.59Cadherin domain-containing protein (Fragment) n=1 ... [more]
A0A4U1GFA6_9SPHI1.330e-4035.00T9SS type B sorting domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12977contigH-elongata_contig12977:4423..8062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue1.1e-100
Seed eggNOG ortholog2880.D7G8H9
EggNOG OGs2CN6T@1,2QU8Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1194
Cds size1194
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12977.2172.1prot_H-elongata_contig12977.2172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12977 4423..8062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.1207078-CDS-H-elongata_contig12977:4422..46341622929771.1207078-CDS-H-elongata_contig12977:4422..4634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 4423..4634 +
1691679151.3822508-CDS-H-elongata_contig12977:4422..46341691679151.3822508-CDS-H-elongata_contig12977:4422..4634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 4423..4634 +
1622929771.1358602-CDS-H-elongata_contig12977:4904..50401622929771.1358602-CDS-H-elongata_contig12977:4904..5040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 4905..5040 +
1691679151.3930492-CDS-H-elongata_contig12977:4904..50401691679151.3930492-CDS-H-elongata_contig12977:4904..5040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 4905..5040 +
1622929771.1522791-CDS-H-elongata_contig12977:5816..60491622929771.1522791-CDS-H-elongata_contig12977:5816..6049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 5817..6049 +
1691679151.401864-CDS-H-elongata_contig12977:5816..60491691679151.401864-CDS-H-elongata_contig12977:5816..6049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 5817..6049 +
1622929771.1715236-CDS-H-elongata_contig12977:6530..68271622929771.1715236-CDS-H-elongata_contig12977:6530..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 6531..6827 +
1691679151.4100676-CDS-H-elongata_contig12977:6530..68271691679151.4100676-CDS-H-elongata_contig12977:6530..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 6531..6827 +
1622929771.1943116-CDS-H-elongata_contig12977:7235..74531622929771.1943116-CDS-H-elongata_contig12977:7235..7453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 7236..7453 +
1691679151.417352-CDS-H-elongata_contig12977:7235..74531691679151.417352-CDS-H-elongata_contig12977:7235..7453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 7236..7453 +
1622929771.2165787-CDS-H-elongata_contig12977:7964..80621622929771.2165787-CDS-H-elongata_contig12977:7964..8062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 7965..8062 +
1691679151.424571-CDS-H-elongata_contig12977:7964..80621691679151.424571-CDS-H-elongata_contig12977:7964..8062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 7965..8062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12977.2172.1

>prot_H-elongata_contig12977.2172.1 ID=prot_H-elongata_contig12977.2172.1|Name=mRNA_H-elongata_contig12977.2172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=398bp
QPGSCATFKGCSLGANRNIVISTDVPSVVNMSTTKPPDRGPYGVGDEIDV
KLWFSKPVEALANVTKAPRLRMSTGTYAEYASGSGTEAMTFIYTVKSGDS
TDTLDAWDAQTNGKLSALDVRYAGNFGYLRRASTSPTTDVDLTLPTPGFQ
GSLSAFVSIKLDTTVSSVVSISTSLADGTYGVGQDIFLLVIFTSTSLDGN
QRYISLNSGGVAFYNDGNGTSALQFLYTVGEGESTADLDVAVVASDVTST
TTLVLESDAIFDIEHESPAVMTLPKPGTGRSLGDKRNIVIDTAPPLVEEV
TSPLSDGQYGPGQMVEIFVKYNTLVTVIGTPRLWLDLGDNDGNAEYHGMR
GDTNDTLRFVYVVREGDSTADLDYTDPFALEVSVPENSTATGNSSAIL
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mRNA from alignment at H-elongata_contig12977:4423..8062+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12977.2172.1 ID=mRNA_H-elongata_contig12977.2172.1|Name=mRNA_H-elongata_contig12977.2172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3640bp|location=Sequence derived from alignment at H-elongata_contig12977:4423..8062+ (Himanthalia elongata Himel1 dioecious)
CAGCCAGGCTCGTGTGCGACGTTCAAAGGATGCTCGCTCGGGGCGAACCG GAATATTGTAATATCGACCGACGTACCCAGCGTAGTCAACATGTCTACGA CGAAGCCACCCGACCGTGGCCCCTACGGCGTGGGCGACGAGATAGACGTC AAACTGTGGTTCTCAAAACCAGTGGAGGCGTTGGCGAACGTCACGAAAGC GCCGAGGCTCAGGTGTGCTACGGCTACGTACCTCTTCAAAAAATAAAAAT GACTTTAGGCGCAAGGCTCGCGTAAAACAAGAAAGCAAACCCCCCTGCAA CTCGAAAAACACTGGGAAATCCCTTGGTGAGAAACGCGCGGCAGCTACCA ATTGTTCCTACTCGACGCTGCCCGATGAAATGCTAACCATTGTATTCGTG GTGAAAACCGTCCGAAATTTGACGGTCGATTAGCGGCATCGTCTCGTTAC TCTACAATACCTCGTGCGGATAACTACACCAGGATGAGTACGGGAACATA TGCTGAGTATGCGTCCGGATCTGGAACGGAAGCGATGACGTTCATATACA CTGTCAAAAGTGGAGATAGCACCGACACTCTCGATGCATGGGATGCTCAA ACAAACGGGAAACTATCGGTAAGCTTTGCCTCGTGGCCTAATCCAGACAA GCTACGAAATAGTTACCCCGAAGCTGCAATTGTATCCTCACGTTCGAGAA GCACCCGCTGCATTACGTTATAATCGTCATGATAAGCGTGGATGATATGA TTCTACCGTCGACGCCTATGTTGATAGGTTGCTTACGAGTGGGATGCGGG GGGAGGGCGGAGGCGGGGGCGGGGGCTGTAGGTCCCAGAGCTAGCATTAT AATATTTGTCGGGGGATGTGGGGATTTTAGCAAGGACTGTCACTGTAGGA TTTTGTGGCCCTCGATATGTACACGCCGAGGTATCAGTGGGAATCATTTG GGTGCTCGGGTCAGGACTAAGGGTCAGTTGATTTATACCTTTCAGGATAA GATGATCTCCACACCTTCATTGTATTGGCTTGGAGCACAAAAGAAGGAGG GTGGGGAAGGGGGTTCTGCGTTCCATTCGATAACATTTAACATGAGTCAT CGAGCACCTCAGACACAAGCCCGTTCACTTTGTCAGCATTCTTGTAATTG CCCACCAGGGTCGGCAATTGATTATGTATTTTCCCGGACACCGATCTCAA TCGACGTTAGCCCCGCAGGGCCTAGTTTCGTGGTTAGGAAGTGATGGGAT CGATGCAGGCTAACACAGAAACCGACGGAGGGAATCAGCCGGTTGAGATC TCGTTCATTGCGCCGTTATCGTATCCACCCACTTTCCTCCACATACTACA TCAAGCACCAATCGATCCTACTCGATGAAAAATTCCCGAAACAGGCTCTT GACGTCAGGTACGCCGGCAACTTTGGGTACCTCCGGCGAGCTTCCACATC GCCCACCACGGACGTAGACCTGACCCTTCCCACGCCAGGATTCCAGGGAA GCCTAAGTGCCTTCGTTTCTATAAAGCTGGACACGACCGTCTCCAGTGTC GTCTCTATTAGCACGAGCCTGGCTGATGGAACGTACGGCGTAGGCCAGGA TATATTTTTGCTGGTAATTTTCACCTCGTCGGTAAGGCTAAACGGGTAAG TGGACTGTGATTGTGGAGCGGGCGCGGCGTTGGGCAAGAATCAGAACGGG CACGGGTAGAGGGAAGGGGAAAGAGCGTATTTGATGCATCTTCGGACGCC ACTCATTGCTCGTAGAGAGGGGGGGGGTCATGATATAGATGCTCAAAGGC GGAAGAGCCCGGAGTTATCGGGGAGCATTTGCAAACACATTCGCTGCGAG AAATGTACGACTCACCCTCGCGGGTTTCCGTATCCAATGAAGGGCCATTG ACGCAAATTTGAGAGTATGCTACCGTTATTGAAGGAGGTACGTAAAGGTG ATGGTGAGGCGCACCGTGCACTCACCCCGAAGCTCGTGCTGCATGGCACG ACAGCATGCGTCCTCCAAGCTTCAAGTTATGGCATGATTTTCGACGTTCC ATCCCGCCCAACCCCCTCGTCCTCTCACAATCTGCCGGGTGGTCCCTGCC TCGACCAGGACTTCGCTCGACGGAAACCAGCGCTATATTTCCCTTAACAG CGGCGGCGTTGCCTTCTATAACGACGGAAACGGCACATCGGCGTTGCAGT TCCTGTATACCGTCGGAGAAGGCGAGTCTACCGCAGACCTTGACGTTGCG GTGGTCGCTAGCGATGTGACATCCACGACGACTTTAGTATTGGAGAGCGA CGCGATCTTCGACATCGAACACGAGTCACCCGCGGTGATGACGCTCCCAA AGCCAGGAACAGGCCGAAGCTTGGGAGACAAGAGGAACATCGTGATCGAC ACCGCGTGAGTCTTATTTACTAAAAATAGTATATTGTGTCACGATTCAAC TCCCCCCCCTCTTTTACCCCCCTGTCGCGATTTTTTTAACTATTTCACAA TACAAAATCTAACGATAACGCCATTCCTCTTCCGAATACCACATCCACTA GTAACTTACCACCCGACTTACATTGTAGGACACCTGACCTTTACTCTCAA AAGTGTTGAAGCGACTGTTCTCAAACAACAAGATAAGCATGGGAGGTGTT GGCGGGAAATTGAAACTGGAAGCCATCGGCGGTAGGCCATAGCGGGCCGT AGCTATATCGCATTCCGTGTGCCGTTCCGGAACAAAAACACTCGCGCGCT ACAAAAAGATTAGAGGATCCGCTTCCCAACTGATCCCGATAGCTGTAACT GTTTTTCCTACAGCCCGCCGTTGGTGGAGGAGGTGACGTCACCTCTCTCC GACGGACAATACGGACCGGGTCAAATGGTGGAGATTTTCGTCAAGTACAA TACACTCGTCACGGTTATCGGGACTCCTCGGCTTTGGCTAGACCTCGGTG ATAACGATGGCAACGCCGAGTACCACGGGATGAGGGGCGACACGAACGAC ACCCTGCGCTTCGTCTACGTCGTTCGTGAAGGTGCGACTTTGACGGAGCT CTGTCTGTTGGATGGAGTTGAGGGTGCGATAACAAAACAATTGCCGATTT CGTGCCAATCGTTTGTGTGTGTGGGGGGGGGGGAGATGTGGGGGGGTGGG GTGGTTGTAGGGGCGATGTCCACTGATGCGATGGGCATGATTTTATCACG TCAAATACAAGCAGGGGTACTCGGGCTCTTCCTAAACATACCGCTCTTAT CATAACTCATACGAGGTAGCTCCTATCATCCCCCCGGTGGGTGGACCAAC TTACTAAATGACTTTTCTCACGAAAAAGGAATATTTCAGACGTTAGGTGG TTCGGCCTTTGAACAGCCAGTCCCTCCCGGAGAAAACATAACGTGATATA CATTTAGTTACTGTAGTCCTATATAGACGAACGCGCGAAGCAGCAGCTAA TATAATGTCCTTGAAGCCCGTGTAAGTCGCGTCCTGCTTTTCCCCGGACA CTAATCATTCATTGCTTCCAACTCTGGACGCCTCTAATGCAGGAGACTCA ACAGCGGATCTGGACTACACGGATCCTTTCGCGCTCGAGGTATCCGTACC GGAGAACAGCACGGCGACTGGCAATTCGTCGGCCATTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig12977:4423..8062+

>mRNA_H-elongata_contig12977.2172.1 ID=mRNA_H-elongata_contig12977.2172.1|Name=mRNA_H-elongata_contig12977.2172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2388bp|location=Sequence derived from alignment at H-elongata_contig12977:4423..8062+ (Himanthalia elongata Himel1 dioecious)
CAGCCAGGCTCGTGTGCGACGTTCAAAGGATGCTCGCTCGGGGCGAACCG
GAATATTGTAATATCGACCGACGTACCCAGCGTAGTCAACATGTCTACGA
CGAAGCCACCCGACCGTGGCCCCTACGGCGTGGGCGACGAGATAGACGTC
AAACTGTGGTTCTCAAAACCAGTGGAGGCGTTGGCGAACGTCACGAAAGC
GCCGAGGCTCAGCAGCCAGGCTCGTGTGCGACGTTCAAAGGATGCTCGCT
CGGGGCGAACCGGAATATTGTAATATCGACCGACGTACCCAGCGTAGTCA
ACATGTCTACGACGAAGCCACCCGACCGTGGCCCCTACGGCGTGGGCGAC
GAGATAGACGTCAAACTGTGGTTCTCAAAACCAGTGGAGGCGTTGGCGAA
CGTCACGAAAGCGCCGAGGCTCAGGATGAGTACGGGAACATATGCTGAGT
ATGCGTCCGGATCTGGAACGGAAGCGATGACGTTCATATACACTGTCAAA
AGTGGAGATAGCACCGACACTCTCGATGCATGGGATGCTCAAACAAACGG
GAAACTATCGGATGAGTACGGGAACATATGCTGAGTATGCGTCCGGATCT
GGAACGGAAGCGATGACGTTCATATACACTGTCAAAAGTGGAGATAGCAC
CGACACTCTCGATGCATGGGATGCTCAAACAAACGGGAAACTATCGGCTC
TTGACGTCAGGTACGCCGGCAACTTTGGGTACCTCCGGCGAGCTTCCACA
TCGCCCACCACGGACGTAGACCTGACCCTTCCCACGCCAGGATTCCAGGG
AAGCCTAAGTGCCTTCGTTTCTATAAAGCTGGACACGACCGTCTCCAGTG
TCGTCTCTATTAGCACGAGCCTGGCTGATGGAACGTACGGCGTAGGCCAG
GATATATTTTTGCTGGTAATTTTCACCTCGCTCTTGACGTCAGGTACGCC
GGCAACTTTGGGTACCTCCGGCGAGCTTCCACATCGCCCACCACGGACGT
AGACCTGACCCTTCCCACGCCAGGATTCCAGGGAAGCCTAAGTGCCTTCG
TTTCTATAAAGCTGGACACGACCGTCTCCAGTGTCGTCTCTATTAGCACG
AGCCTGGCTGATGGAACGTACGGCGTAGGCCAGGATATATTTTTGCTGGT
AATTTTCACCTCGACTTCGCTCGACGGAAACCAGCGCTATATTTCCCTTA
ACAGCGGCGGCGTTGCCTTCTATAACGACGGAAACGGCACATCGGCGTTG
CAGTTCCTGTATACCGTCGGAGAAGGCGAGTCTACCGCAGACCTTGACGT
TGCGGTGGTCGCTAGCGATGTGACATCCACGACGACTTTAGTATTGGAGA
GCGACGCGATCTTCGACATCGAACACGAGTCACCCGCGGTGATGACGCTC
CCAAAGCCAGGAACAGGCCGAAGCTTGGGAGACAAGAGGAACATCGTGAT
CGACACCGCGACTTCGCTCGACGGAAACCAGCGCTATATTTCCCTTAACA
GCGGCGGCGTTGCCTTCTATAACGACGGAAACGGCACATCGGCGTTGCAG
TTCCTGTATACCGTCGGAGAAGGCGAGTCTACCGCAGACCTTGACGTTGC
GGTGGTCGCTAGCGATGTGACATCCACGACGACTTTAGTATTGGAGAGCG
ACGCGATCTTCGACATCGAACACGAGTCACCCGCGGTGATGACGCTCCCA
AAGCCAGGAACAGGCCGAAGCTTGGGAGACAAGAGGAACATCGTGATCGA
CACCGCCCCGCCGTTGGTGGAGGAGGTGACGTCACCTCTCTCCGACGGAC
AATACGGACCGGGTCAAATGGTGGAGATTTTCGTCAAGTACAATACACTC
GTCACGGTTATCGGGACTCCTCGGCTTTGGCTAGACCTCGGTGATAACGA
TGGCAACGCCGAGTACCACGGGATGAGGGGCGACACGAACGACACCCTGC
GCTTCGTCTACGTCGTTCGTGAAGCCCGCCGTTGGTGGAGGAGGTGACGT
CACCTCTCTCCGACGGACAATACGGACCGGGTCAAATGGTGGAGATTTTC
GTCAAGTACAATACACTCGTCACGGTTATCGGGACTCCTCGGCTTTGGCT
AGACCTCGGTGATAACGATGGCAACGCCGAGTACCACGGGATGAGGGGCG
ACACGAACGACACCCTGCGCTTCGTCTACGTCGTTCGTGAAGGAGACTCA
ACAGCGGATCTGGACTACACGGATCCTTTCGCGCTCGAGGTATCCGTACC
GGAGAACAGCACGGCGACTGGCAATTCGTCGGCCATTTTAGAGACTCAAC
AGCGGATCTGGACTACACGGATCCTTTCGCGCTCGAGGTATCCGTACCGG
AGAACAGCACGGCGACTGGCAATTCGTCGGCCATTTTA
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