mRNA_H-elongata_contig129734.2169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129734.2169.1
Unique NamemRNA_H-elongata_contig129734.2169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 4.530e-110
Identity = 163/224 (72.77%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+SEQLESVTAEVF ELGNMDQTP+QHEMPVET+LEK  AKDARI+ G GKEKERFTLCLAV  D  KVPLR IF GTP  PP++PGKGK TQPRK SIA E+ P NR+K G+P  GMSFGVQE SWCD REC LWI  SW LRPNN S++ QRP ILVLDDFKCH+D+ FIA+L+++ NT  I I GGLTPLLQPLDRMLNK+MKRLL G YT Y
Sbjct:   31 ESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATG-GKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 8.140e-104
Identity = 163/224 (72.77%), Postives = 177/224 (79.02%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+ EQL SV AEVF+ELGNMDQTP+QHEMPVETTLEK  AKDARIS G GKEKERFTL LAVMADG KV  RIIF GTPF PP   GKGK T PRK S+A E+ P NR K  HPA GMSFGVQE SW D REC  WI  SW+LRPNN SI+ QRP ILVLDDFKCH+DE +IA L++  NT  I+I GGLTPLLQPLDRMLNKQMKRLL GKYT Y
Sbjct:   93 ESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTG-GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 2.470e-103
Identity = 163/224 (72.77%), Postives = 176/224 (78.57%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+SEQL SV AEVF+ELGNMDQTP+QHE+PVETTLEK  AKDARIS G GKEKERFTL LAVMADG KV  RIIF GTPF PP   GKGK T PRK S+A E+ P NR K GHPA GMSFGVQE SW D REC  WI  SW+LRPNN SI+ QRP ILVLDDFKCH+DE FIA L++  NT  I I G LTPLLQPLDRMLNKQMKRLL  KYT Y
Sbjct:   93 ESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTG-GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 8.680e-102
Identity = 160/224 (71.43%), Postives = 175/224 (78.12%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+SEQL SV AEVF++LGNMDQTP+QHEMPVETTLEK  AKDAR+S G G+EKERFTL LAV ADG KV LRIIF GTPF PP   GKGK T PRK S+A E+ P NR K GHPA GMSFGVQE SW D REC  W   SW+LRPNN SI+ QRP ILVLDDFKCH+DE FIA L++  NT  I I GGLTPLLQPLDRMLNKQ KRLL  KYT Y
Sbjct:   27 ESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTG-GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 2.180e-100
Identity = 160/224 (71.43%), Postives = 174/224 (77.68%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+SEQL SV AEVF+E+GNMDQ P+QHEMPVETTL+K  AKDARIS G G EKERFTL LAV ADG KV  RIIF GTPF PP   GKGK T+PRK  +A E+ P NR K GHPA GMSFGVQE SW D REC  WI  SW+LRPNN SI+ QRP ILVLDDFKCH DE FIA L++  NT  I I GGLTPLLQPLDRMLNKQMKRLL GKYT Y
Sbjct:  287 ESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 3.600e-99
Identity = 162/249 (65.06%), Postives = 180/249 (72.29%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVG-------------------------KEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+LSS QLE VT E+F++LGNMDQTP+Q+EMPVETTLEK  AKDARI+ G G                         KEKERFTLCLAV ADG+KVPLRIIF GTPF PP  PGKGK TQPRK SIA EV P NR+K G P  GMSFGVQE SWCD RE  LWI  SW+LRPNN S++ QR  ILVLDDFKCH+D+ FIA L++  NT  I I GGLTPLLQPLDRMLNKQMKRLL G YT +
Sbjct:  180 ESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 9.890e-99
Identity = 163/224 (72.77%), Postives = 177/224 (79.02%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+LSS QLE VT E+F+ELGNMDQTP+QHEMPVETTLE   AKDARI+ G GKEKERFTLCLAV ADG KVPLRIIF GTPF PP  PGKGK TQPRK SIA EV P NR+K G P  GMSFGVQE SWCD REC LWI  SW+LRPNN SI+ QR  ILVLDDFKCH+D+ FIA L++  NT  I I GGL PL QPLDRMLNKQMKRLL G YT +
Sbjct:  247 ESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATG-GKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 7.780e-95
Identity = 160/232 (68.97%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRL--------RPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+L+SEQ  SV AEVF+ELGNMDQTP+QHEMPVETTLE    KDARIS G GKEKERFTL LAVMADG  V   IIF GTPF PP   GKGK T PRK S+A EV P NR K GHPA GMSFGVQE SW   +EC  WI  SW+L        RPNN SI+ QRP ILVLDDFKCH+DE FIA L +  NT  I I GGLTPLLQPLDRMLNKQMKRLL GKYT Y
Sbjct:  247 ESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTG-GKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 3.620e-94
Identity = 156/219 (71.23%), Postives = 177/219 (80.82%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWG 657
            E P+ G++L+  QLESV A+VF+ELGNMDQTP+Q EMPVETTLEKR  KDARIS G GKEK+RFT CLAVMADG KVP RIIF G PF PP+  G+ K TQ RKG IAAEV   NRTKFG+P  GM F VQE SWCDARECTLW+  SWR RPN+ S+I QR SILVLDDF+CHR E+F+ DLR+R NT+ ILI GGLTPLLQPLDRMLNK+MKRL+ G
Sbjct:  162 ESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTG-GKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 3.390e-92
Identity = 153/224 (68.30%), Postives = 168/224 (75.00%), Query Frame = 1
Query:    1 ELPVNGEELSSEQLESVTAEVFQELGNMDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKVPLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMSFGVQENSWCDARECTLWI*ASWRLRPNNRSIITQRPSILVLDDFKCHRDEAFIADLRKRCNTSAILILGGLTPLLQPLDRMLNKQMKRLLWGKYTTY 672
            E P+ GE+LSS QLE VT E+F+ELGNMDQTP+QHE PVE  L KR  +    S      +ERFTLCLAV ADG KVPLRIIF GTPF PP  PGKGK TQPRK SIA EV P NR+K G P  GMSFGVQE SWCD REC LWI  SW+LRPNN SI+ QR  ILVLDDFKCH+D+ FIA L++  NT  I I GGLTPLLQPLDRMLNKQMKRLL G YT +
Sbjct:  217 ENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVER-LWKRPVRRMPAS----PPEERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 435          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129734.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI4.530e-11072.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE8.140e-10472.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.470e-10372.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE8.680e-10271.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE2.180e-10071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE3.600e-9965.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE9.890e-9972.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE7.780e-9568.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE3.620e-9471.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRZ1_9PHAE3.390e-9268.30DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129734contigH-elongata_contig129734:947..1854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue4.6e-42
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size672
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129734.2169.1prot_H-elongata_contig129734.2169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129734 1181..1773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.8739839-UTR-H-elongata_contig129734:946..11801622929770.8739839-UTR-H-elongata_contig129734:946..1180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129734 947..1180 -
1691679151.2977235-UTR-H-elongata_contig129734:946..11801691679151.2977235-UTR-H-elongata_contig129734:946..1180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129734 947..1180 -
1622929770.9237807-UTR-H-elongata_contig129734:1773..18541622929770.9237807-UTR-H-elongata_contig129734:1773..1854Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129734 1774..1854 -
1691679151.3268123-UTR-H-elongata_contig129734:1773..18541691679151.3268123-UTR-H-elongata_contig129734:1773..1854Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig129734 1774..1854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.889174-CDS-H-elongata_contig129734:1180..14491622929770.889174-CDS-H-elongata_contig129734:1180..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129734 1181..1449 -
1691679151.3084347-CDS-H-elongata_contig129734:1180..14491691679151.3084347-CDS-H-elongata_contig129734:1180..1449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129734 1181..1449 -
1622929770.9083514-CDS-H-elongata_contig129734:1685..17731622929770.9083514-CDS-H-elongata_contig129734:1685..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129734 1686..1773 -
1691679151.3172767-CDS-H-elongata_contig129734:1685..17731691679151.3172767-CDS-H-elongata_contig129734:1685..1773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129734 1686..1773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129734.2169.1

>prot_H-elongata_contig129734.2169.1 ID=prot_H-elongata_contig129734.2169.1|Name=mRNA_H-elongata_contig129734.2169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MDQTPIQHEMPVETTLEKRRAKDARISIGVGKEKERFTLCLAVMADGSKV
PLRIIFNGTPFNPPNKPGKGKITQPRKGSIAAEVAPGNRTKFGHPAVGMS
FGVQENSWCDARECTLWI*
back to top

mRNA from alignment at H-elongata_contig129734:947..1854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129734.2169.1 ID=mRNA_H-elongata_contig129734.2169.1|Name=mRNA_H-elongata_contig129734.2169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig129734:947..1854- (Himanthalia elongata Himel1 dioecious)
GAGCTCCCCGTGAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGT GACGGCGGAGGTTTTCCAAGAACTCGGCAATATGGACCAGACGCCCATCC AGCACGAGATGCCGGTGGAGACAACTCTGGAGAAGCGTCGTGCGAAGGAT GCTCGCATCAGCATAGGAGGTGAGAGTATTGTGGCTGCGTGCTTGTCGAT AGTATGTATTTTGCATCGTTTTAATGTTTTTATTGTACGGTTGCTGCTGC TGCTGCTGCTGCTGCTGCCACAACGCGAGCTTTGTTTCTCTAGATGATAG GTATTTTTTGGCACCGTAAAATACCCCTGCATCGTGAATACAAAGTATAA ATCAAAACATGCAACTATAACCCCCTCCCGCCCTCTCTTTGTGTCGACTA CCCAGTAGGAAAGGAAAAGGAGCGCTTCACTCTCTGTCTTGCTGTCATGG CGGACGGCAGCAAGGTTCCGCTACGCATCATCTTCAACGGCACGCCGTTC AACCCGCCAAACAAGCCAGGGAAGGGCAAGATAACTCAGCCGCGGAAGGG GTCCATCGCGGCAGAGGTTGCCCCTGGGAATCGTACCAAGTTCGGGCACC CCGCGGTGGGCATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCG CGGGAGTGCACCCTTTGGATCTAGGCGAGCTGGAGGCTTCGACCCAACAA CAGAAGCATCATCACGCAGCGTCCGAGCATCCTGGTGTTGGACGACTTCA AGTGCCACCGTGACGAGGCCTTCATCGCTGACCTCCGGAAGAGGTGCAAC ACCAGCGCCATCCTGATCCTGGGCGGGTTGACTCCTCTCCTCCAGCCGCT GGACCGCATGCTCAACAAGCAGATGAAGCGGCTACTGTGGGGGAAGTACA CCACCTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig129734:947..1854-

>mRNA_H-elongata_contig129734.2169.1 ID=mRNA_H-elongata_contig129734.2169.1|Name=mRNA_H-elongata_contig129734.2169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig129734:947..1854- (Himanthalia elongata Himel1 dioecious)
ATGGACCAGACGCCCATCCAGCACGAGATGCCGGTGGAGACAACTCTGGA
GAAGCGTCGTGCGAAGGATGCTCGCATCAGCATAGGAGATGGACCAGACG
CCCATCCAGCACGAGATGCCGGTGGAGACAACTCTGGAGAAGCGTCGTGC
GAAGGATGCTCGCATCAGCATAGGAGTAGGAAAGGAAAAGGAGCGCTTCA
CTCTCTGTCTTGCTGTCATGGCGGACGGCAGCAAGGTTCCGCTACGCATC
ATCTTCAACGGCACGCCGTTCAACCCGCCAAACAAGCCAGGGAAGGGCAA
GATAACTCAGCCGCGGAAGGGGTCCATCGCGGCAGAGGTTGCCCCTGGGA
ATCGTACCAAGTTCGGGCACCCCGCGGTGGGCATGTCGTTTGGTGTGCAG
GAGAATAGCTGGTGTGACGCGCGGGAGTGCACCCTTTGGATCTAGTAGGA
AAGGAAAAGGAGCGCTTCACTCTCTGTCTTGCTGTCATGGCGGACGGCAG
CAAGGTTCCGCTACGCATCATCTTCAACGGCACGCCGTTCAACCCGCCAA
ACAAGCCAGGGAAGGGCAAGATAACTCAGCCGCGGAAGGGGTCCATCGCG
GCAGAGGTTGCCCCTGGGAATCGTACCAAGTTCGGGCACCCCGCGGTGGG
CATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCA
CCCTTTGGATCTAG
back to top