mRNA_H-elongata_contig12951.2159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12951.2159.1
Unique NamemRNA_H-elongata_contig12951.2159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 1.360e-95
Identity = 158/221 (71.49%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCRE-NDVERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPEGSRLDGSFSRQRGFRKKFKKYGPSRTFQG 660
            VLAAATLPTYGLKSVDQYIKRAFP+A KIQQVHMH+HHPAIQQ F+EVG +V DKI+A+ DLL    ++ + SRTMVFTNTA+SC+ A EALAE G SVVPYHKD+ P ERL NL AL+SGRAKILVCTDLAARGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK    S+    EGSRLDGSFSRQRGFR+KFKKYGPSR +QG
Sbjct:  242 VLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTASSCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSITEVGEGSRLDGSFSRQRGFRRKFKKYGPSRRYQG 462
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BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 2.420e-94
Identity = 160/221 (72.40%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCRE-NDVERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPEGSRLDGSFSRQRGFRKKFKKYGPSRTFQG 660
            VLAAATLPTYGLKSVDQYIKRAFP+A KIQQVHMH+HHPAIQQ F+EVG +V DKI+A+ DLL    +D + SRTMVFTNTAASC+ A EALAE G SVVPYHKD+ P ERL NL AL+SGRAKILVCTDLAARGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK    S+    EGSRLDGSFSRQRGFR+KFKKYGPSR +QG
Sbjct:  442 VLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSDADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSITEVGEGSRLDGSFSRQRGFRRKFKKYGPSRRYQG 662
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A836CM84_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM84_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.040e-42
Identity = 99/227 (43.61%), Postives = 129/227 (56.83%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEV----GRKVSDKIEALADLLCRENDV------------ERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPEGSRLDGSFSRQRGFRKKFKK 633
            +LAAATLP+YGLKSV+  ++RAFP A +I   HMH+ HPA++QE++ V    G   +  + AL + L   N              E  R MVF NTAAS R A  AL   G++  PYH DV   +R   L   ++GRA+ LVCTDLAARG+D+P V  +VQ E A+NVV HL              AT  +D+S  A   S+    +   +D SFSR+RGFRKK KK
Sbjct:  323 ILAAATLPSYGLKSVEALVRRAFPRATRITADHMHRQHPALRQEWVRVEGPPGPSAARDV-ALLEALRAANTAAGIGDDDAAGAAEPLRAMVFCNTAASARAAHAALEAAGVAAAPYHGDVPAAQRAALLNEFRAGRARALVCTDLAARGLDIPGVDHVVQYEFASNVVQHLHRLGRAARAGRRGVATTLWDASCAALAESVRAAGDAGGVDASFSRKRGFRKKLKK 548
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BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A7S2XFB3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFB3_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 3.910e-40
Identity = 87/216 (40.28%), Postives = 128/216 (59.26%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCRENDVERSRTMVFTNTAASCRLACEALA---ERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPEGSRLDGSFSRQRGFRKKFKKYG 639
            VL+AAT+P  GLKSVD+ I++ FP+A  ++   MHKHHP+ QQ+F++  +   DK+  + + L  ++  +  +T+VF NTA   +   +AL    E    + PYHKD+   ER   L   +     +LVCTDL ARG+D+P V  ++Q + ATNVV HL          XX  +TN +D + +    ++L   EG+ LD SFSR+RGFRK  K+YG
Sbjct:   86 VLSAATIPNMGLKSVDRSIEKRFPNAEHVRAKLMHKHHPSTQQDFVKTTKDFDDKVSKVLESL-EKHSKDNPKTIVFANTAKDAQRFADALMDVYEHPDLIFPYHKDIPADERDSVLGLFRKTPNGVLVCTDLGARGLDIPDVRHVIQAQFATNVVQHLHRIGRATRAGXXGRSTNLYDEANEDLVDAILAAGEGN-LDHSFSRRRGFRKTVKRYG 299
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BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.560e-39
Identity = 80/163 (49.08%), Postives = 99/163 (60.74%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCRENDVERS-------RTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHL 468
            VLAAATLPTYGLKSVD Y+++ F  A ++    MH+HHP + Q+FIEVG  + +KIEAL   L  E    R        R MVF NT A+      ALA  G+    YHK   P ER   L   ++G + +LVCTDLAARG+DVP VT ++Q E A NVV HL
Sbjct:  107 VLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAEEVAAALAAEGVPCAAYHKKTPPAEREGALARFRAGESPVLVCTDLAARGLDVPGVTHVLQAEFAPNVVQHL 269
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.840e-38
Identity = 95/237 (40.08%), Postives = 127/237 (53.59%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCR---------------------ENDVERS---RTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPEGSRLDGSFSRQRGFRKKFKKYG 639
            VLAAATLP+YGLKSV++ +K+ FPSA ++    MHKHHP + Q F+E    +  KI  L  +L +                     E + + +   +TMVF NTA +      A+   G   V +HK+V  +ER  NL   +S +  +LVCTDLAARG+D+P V ++VQ+E A NVV HL              A NF+D        SL    +   L+ SFSRQRGFRKK KKYG
Sbjct:  387 VLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGKEXXXXXEGEAQATILPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDLGAHDLVESLQLA-QADTLERSFSRQRGFRKKIKKYG 622
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.770e-38
Identity = 98/230 (42.61%), Postives = 130/230 (56.52%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEV---------GRKVSDKIEA-----LADLLCRENDVER-SRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSST----KASRGSLLHGPEGSRLDGSFSRQRGFRKKFKK 633
            +L+AAT+PTYGLKSVD+ + + FP+A +++   +H+  P ++  ++EV         G  V  +  A     L +LL      +   RTMVF NTA +   ACE L + GL    YHK+V    R ENL    SG+  ILVCTD+AARGID+  V  +VQ E A+NVV HL      XXXXX   AT+F D S+    +  RG     P    LD SFSR+RGF+KK KK
Sbjct:   68 ILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEVESMGDEREGGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTATTAAAACEYLRKAGLPAAEYHKEVLVGIREENLGLFSSGQVPILVCTDMAARGIDIQGVQHVVQFEFASNVVQHLHRLGRTXXXXXQGTATHFVDPSSDLAERIRRGMETESP----LDDSFSRKRGFKKKLKK 293
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC)

HSP 1 Score: 137 bits (344), Expect = 4.030e-34
Identity = 87/231 (37.66%), Postives = 125/231 (54.11%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVS--DKIEALADLLCR----------ENDVERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFF--DSSTKAS--RGSLL----HGPEGSRLDGSFSRQRGFRKKFKK 633
            ++ AATLP  G  SVD +++R FP A +++   MH+H P +QQ+FI +G   S  D++  L D +            E  V+  +T++F NT  S +    AL + G+ VVP H D+   ER+ NL A + G + ILVCTDLAARG+D+P +  ++Q + A NVV HL          X   A NF+  DS    S  + SL      G +G  L+ +FSR R  RKK +K
Sbjct:  268 IMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEAVDVGKTIIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGRAARAGXAGHAINFYGKDSEDLVSMIQESLKVAEERGSDGGLLEQAFSRNRSLRKKLRK 498
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: C1EHR7_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHR7_MICCC)

HSP 1 Score: 128 bits (321), Expect = 1.780e-30
Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCRENDV-ERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPE--GSRLDGSFSRQRGFRKKFKKYGPSRT 651
            V AAAT+ + G K+    I+  FP A  I+   +HK    + Q +++V    S + +AL   L   ++  +R RT+VF N+  +C      L  +GLS   +H +V  +ER   L +L +G   +LVCTD AARG+DVP V  +VQ E A N V +L               TN   S+  A     +   E  G+ ++G+FSR+R FRKKFKKYGPSRT
Sbjct:  447 VFAAATVMSNGKKTPGAMIRHGFPDARWIEGRRLHKAVATVDQTWVKVT--ASTRADALGRALALGDEKRQRDRTLVFVNSTRACEEVTAELIRQGLSAAAFHAEVGTRERSSRLVSLANGDVTVLVCTDSAARGVDVPEVVHVVQAEFAANAVDYLHRIGRTARCGASGRVTNLV-SNADADLVDAVRAAEAAGAPVEGAFSRKRSFRKKFKKYGPSRT 663
[Close]
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Match: A0A7S0PJX5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PJX5_MICPS)

HSP 1 Score: 127 bits (318), Expect = 4.420e-30
Identity = 81/220 (36.82%), Postives = 116/220 (52.73%), Query Frame = 1 
Query:    1 VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGRKVSDKIEALADLLCR-ENDVERSRTMVFTNTAASCRLACEALAERGLSVVPYHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASRGSLLHGPE--GSRLDGSFSRQRGFRKKFKKYGPSRT 651
            + AAAT+ + G K+    I+  FP A  I+   +HK    + Q ++ V    S++ +AL   L   + + +R RT+VF N+  +C      L  +GL+   +H DV   ER + L AL +G   +LVCTD AARG+DVP V  ++Q E A N V +L               TN   S   A     +   E  G+ ++G+FSR+R FRKKFKKYGPSRT
Sbjct:  436 LFAAATVMSNGKKTPGAMIRHGFPDARWIEGRRLHKAVATVAQTWVNVTS--SNRADALGRALALGDEERQRERTLVFVNSGDACEEVTAELIRQGLTAAAFHADVGTSERTKRLDALAAGDVTVLVCTDSAARGVDVPGVEHVIQAEFAANAVDYLHRIGRTARCGASGRVTNLV-SGADADLVEAVRAAEVAGAPVEGAFSRKRSFRKKFKKYGPSRT 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12951.2159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBP8_9PHAE1.360e-9571.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR69_ECTSI2.420e-9472.40DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CM84_9STRA1.040e-4243.61P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2XFB3_9EUKA3.910e-4040.28Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S4D991_HETAK1.560e-3949.08Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TS57_9STRA1.840e-3840.08RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae... [more]
A0A7S2R527_9STRA8.770e-3842.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4ESI9_VITBC4.030e-3437.66Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
C1EHR7_MICCC1.780e-3037.27Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0PJX5_MICPS4.420e-3036.82Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12951contigH-elongata_contig12951:636..6379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.5
Seed ortholog evalue8e-80
Seed eggNOG ortholog2880.D7FR69
KEGG koko:K14806
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009507,GO:0009536,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0333@2759,KOG0348@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-08_005190.1
Exons7
Model size669
Cds size669
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929769.787629-CDS-H-elongata_contig12951:635..7641622929769.787629-CDS-H-elongata_contig12951:635..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 636..764 +
1691679150.8952324-CDS-H-elongata_contig12951:635..7641691679150.8952324-CDS-H-elongata_contig12951:635..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 636..764 +
1622929769.8058884-CDS-H-elongata_contig12951:1578..16451622929769.8058884-CDS-H-elongata_contig12951:1578..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 1579..1645 +
1691679150.9063203-CDS-H-elongata_contig12951:1578..16451691679150.9063203-CDS-H-elongata_contig12951:1578..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 1579..1645 +
1622929769.8199737-CDS-H-elongata_contig12951:2621..26801622929769.8199737-CDS-H-elongata_contig12951:2621..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 2622..2680 +
1691679150.913848-CDS-H-elongata_contig12951:2621..26801691679150.913848-CDS-H-elongata_contig12951:2621..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 2622..2680 +
1622929769.854911-CDS-H-elongata_contig12951:4024..41671622929769.854911-CDS-H-elongata_contig12951:4024..4167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 4025..4167 +
1691679150.9245253-CDS-H-elongata_contig12951:4024..41671691679150.9245253-CDS-H-elongata_contig12951:4024..4167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 4025..4167 +
1622929769.8798459-CDS-H-elongata_contig12951:5280..53381622929769.8798459-CDS-H-elongata_contig12951:5280..5338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 5281..5338 +
1691679150.934287-CDS-H-elongata_contig12951:5280..53381691679150.934287-CDS-H-elongata_contig12951:5280..5338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 5281..5338 +
1622929769.9239686-CDS-H-elongata_contig12951:5561..56731622929769.9239686-CDS-H-elongata_contig12951:5561..5673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 5562..5673 +
1691679150.9431624-CDS-H-elongata_contig12951:5561..56731691679150.9431624-CDS-H-elongata_contig12951:5561..5673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 5562..5673 +
1622929769.9682295-CDS-H-elongata_contig12951:6278..63791622929769.9682295-CDS-H-elongata_contig12951:6278..6379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 6279..6379 +
1691679150.951841-CDS-H-elongata_contig12951:6278..63791691679150.951841-CDS-H-elongata_contig12951:6278..6379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12951 6279..6379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12951.2159.1prot_H-elongata_contig12951.2159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12951 636..6379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12951.2159.1

>prot_H-elongata_contig12951.2159.1 ID=prot_H-elongata_contig12951.2159.1|Name=mRNA_H-elongata_contig12951.2159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
VLAAATLPTYGLKSVDQYIKRAFPSAHKIQQVHMHKHHPAIQQEFIEVGR
KVSDKIEALADLLCRENDVERSRTMVFTNTAASCRLACEALAERGLSVVP
YHKDVAPKERLENLTALKSGRAKILVCTDLAARGIDVPSVTRIVQMEMAT
NVVHHLHRLGRAARAGRTGRATNFFDSSTKASRGSLLHGPEGSRLDGSFS
RQRGFRKKFKKYGPSRTFQGQG*
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mRNA from alignment at H-elongata_contig12951:636..6379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12951.2159.1 ID=mRNA_H-elongata_contig12951.2159.1|Name=mRNA_H-elongata_contig12951.2159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5744bp|location=Sequence derived from alignment at H-elongata_contig12951:636..6379+ (Himanthalia elongata Himel1 dioecious)
GTGTTAGCGGCGGCGACCTTGCCGACGTACGGCCTAAAGTCCGTAGATCA
GTACATTAAGAGGGCGTTCCCTTCCGCCCACAAGATTCAACAGGTCCACA
TGCACAAGCATCACCCCGCCATCCAGCAGGTGTCTTCACAAGCTATTGTT
GCTCATTTATTTATTAGTTTTATTTATTTATTTATTAGTTTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTATTTTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTAGTTTTATTTATTTATTTATTTATTTACTTACTTATTTATTAGTTTTA
TTTATTTATTTATTAGCTTTATTTATTTATTTATTTACTTACTTATTTAT
TAGTTTTATTTATTTATTTATTAGCTTTATTTATTTATTTACGAAGTATT
TATTTATTTTCATATATTTTATACATGTTCAAGATATCTACAGAGGCTAT
ATTGAAATGATTTATTTTGGGAAAATGCGCTTGTAATTGGTACGTTAGCA
TTTTGCGACATGGCACAAGGAGGATATATAAAATGTACGACTATATTTTT
TAATTATACTGGTACTTAATATAGAATTTTCACACACGGAGCGACGGTGA
AGCCCAGATGACCGCTGGATGAAAGCCTTTCACCTGTCAAAACAGGCGAA
ACCGAAATCTCGAAAACCCGAGAGGAAGATATTTATATTGATAGTTAGTT
ACCTGGCGGACAGAATATGGACACGGTTGCTCCATCCTGCCTTCCCCCCC
CCCCCCTCCTATCCCCTATCCCCTCCGTTCACAAACGCCTCAAGGCACCA
TCCTGACATTGCACTTGTTTCCATGTTTTTTTCGTAACTTCAGGAGTTCA
TAGAAGTTGGGAGGAAGGTTTCCGACAAGATTGAGGCGCTCGCCGACCTG
CTCTGCCGAGGTAAGGAGGCTCTCCCGCCACCGCGCGCGCCTTTGGCTAC
GGACGGCCTAGGGGCAAGACTCCACATAAGATGACAGTCACGGAAGATAA
CAGTCTCGTTTTTTATTTTGTTCTGTTTTTGTTTTTGTATTGTTTCGTGT
TTCGTGTTTCCTTCGATTGGTGACCAACCAATCCGGCACGTTGAATGTCC
GTACCGTATACCGTATAGTTTATTTGATACAACAATGTCTTGACCTTCTC
TTTTTGCGGTATTTTATTGTGTCGCGTTACGGTGGTGGTTTTCATTACGG
TACGTTTTGTCCTCGTGGTATATACGAAATATATTTTACTTCATTTTCGA
GATGGAGTTGGAGTTCCATTCTTCCGTTTGTTTTTTTTGTTAAAAGCAAA
TCACCTCATGCCCCCCGCCTCCACATTCCCCTCCTTTCTCCTATTCCGTA
CCTTAAGAAGAAAATTCATATTTCGCCGGCGTCGATCCTCCTCCTAGCTC
GTGAGGGTGATAATCGGATGTTTATTTGTTGCCGTATGTTACTATTATAC
TGTTATATGTATGGATGTGCTATCGTTGTTCATAAAGGCTTCGTCTGTAA
GATATATATATATATATATATATATAATATAGACATGTATACTTCAAAGG
TGTTAAAATTATAAGTGCTTTTGGCGTTTGTAATGAATGACGGCTTGGCG
GGCAGGGGCTATCACAGCGGAAAATATGGTGTATCATCGCTTCACGCGCG
ATAACCGCGTAATCCGTCCCTGTCATGCTAGTCCTTCTAGGTTTCTCTCG
CATTTATCCTCCTTTGTGTGTGTGTGTGTGTATTCATTAAATTGCACATA
ACCGCGCAATCCGGCCCTGTCGTCCTAGTCCTTCTATGCCACCCGTATTG
ATCCTCCTAGGGGGGATCTGTGTGTGTGTGTGTTCAAGAGTCGATCCTCA
TCTCTCTTACCTTATGCTTTTGATCGTTGTTTCCAGAGAATGACGTGGAA
CGAAGTCGGACGATGGTGTTCACCAACACCGCCGCTTCGTGCAGGGTGAG
TTAAAGTAGAAGGTTTCAAGATGTTTCGCGGCTTTTTTTTGTGTGTGTAT
GGGGGGGCTGTTAGCCACGTGCAGCGGATCAAGCGATGCAAGAGTAGAAG
ATTCGTAGACATCCGTTTTATTCGTCGTGTTACCTTCTAGTACGGTACAG
TAAACGGTATATGATGACGGTACAATAAACGGTATATGATAACGATACAG
TAAACGGTATACCATGACGGTACAGTAAACGGTATATAATGACAGTACAG
TAAACGGTATATGATGAGGATACAGTAAACGGTATATGATGACGGTACAG
TAAACGGTATATGATGACGATACAGTAAACGGTATATGATGAGAGTACAG
TAAACGGTATGTGATGACGGTACAGTAAACGGTATATGATGAGGATAGAG
TAAACGGTATATGATGACGATACAGTAAACGGTATATGATGACGATACAG
TAAACGGTATATGATAACGGTACAGTAAACGGTATATGATGAGGATAGAG
TAAACGGTATATGATGACGGTACAGTAAACGGTATATGATGACGATACAG
TAAACGGTATATGATGACGGTACAGTAAACGGTATATGATAACGATACAG
TAAACGGTATACGATGACGGTACAGTAAACGGTATATGATTACCGTTGAT
CACCGTTGTCTGGGTGAGAAAGACTCCGGAGGGGTGGTTCGCTGCACAGC
ACCCCTAACTCCGCTTGAACCACGCCGCTGGCTATCCAGCATTACGTAAA
GTTCTTCGGAGGACAACAGTTCGTTATACTAGGGAAAATAGGATAAGGGC
ACAGTTGTTGATGGTTATTATAATAAGCTGTGTAGTATACCTGTATCATA
GTATAGTATATTATGCAGGAACAAAAAGAGGAGCTAGCTCTGGCGAAAAA
AACTAAAATATAACTCGAAGTGGGCGGGAAAATAAAATAAAATGCTCACC
CCCCGCTCTATTTACCCTTTTCTCAAGTCTCAAGTATATTTCGAAGAGTA
CGGCTCGCTCTCTTTCAACGAAGGTATATTTCGAAGAGAGAAAGTACATG
CCTTGCGAAAAGAAAAGAGCTCCGCAAATACTCTCTAGCGCCTGGAGGGC
ACGTCGGCTAGGCGATCAACAGAAGAGTTGTCATGATGTCATGTTGTCGT
CATGGCGCCGTGTTCCCGCGCGGCATGTTTTGATTAGAGCTGCTTCGTTG
CCGTGTTGTTTGACAAGCCCTACTTGATTAGTTCTGCGGGGGGAGGGAGA
CAAACGCCGCGCGTATTGTTTTACACCCCGTCACCCGAGGGTGTTTGGAC
ATCATATCCTGCCCGAACCCTCCCCTCTCCTTTCCTCAGCTAGCGTGCGA
GGCGCTCGCCGAAAGGGGTCTCTCCGTGGTTCCGTACCACAAGGACGTGG
CCCCCAAGGAACGCCTCGAGAACCTGACGGCTCTCAAGAGTGGAAGGGCG
AAGATCCTCGTCTGCACCGACCTCGCCGCAAGGTGTCGTTACAGCACAAT
ATTGTAGGCATAATAATGCCAATGTTTTTTTCGAGCATTTAGTATTAGAG
TGCTAAGAAGCAAAGTACCAGCGCTGTATTTTCTCTACCACTATTAGTCT
ATATAGATAGATAGACTATACCAAAGTATTTACTTATTTATTCATACATT
CATGTGTGCTGAATTTATTTGTTCCTTCTGTCATTTGTTAATGCATTGAT
GCATGTATAGATCTCGATCATATTTGTTTATTTAGCTCCAGACGATATCT
TTATTTATTCATGTAGGGTGTTTATTTGTTTATTTCTAGGTATAATATTT
TGAAGTGGTTTATTTTATTTATTTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTTTTATTTATTTATTTATTTAGTCTATATTTA
TAATATTTATATTTGTTTTCATACCGTTGTTGATGTTGATGTTGATGGGG
TTTCCATACTGTACAAAAGCACAAACCGAAAGATTACCCCCAAATGCCTC
ACTGGTAATGATGACTTGACGTCATCAAAATAATGGTGACGGCAACAATA
CGATACGATCATGCTTTTTCTCTCGAGACTTGATGTTTATACTGTATATT
GAGGTACCACACAGTACCATATTGTCAATGACATCGGTAGGGTTGCCGCG
GCGATCGATTGGTATCGTTACCAACATCATTTGGGGATCGGGGAAGTTGG
GGATGCGGTTTTACATCTCACCACTACGCATCTGGTGCAATCCTTACCCT
AGTGTATAATAGAAGTATATAATAAGCTGATTTGTGTTATTAAGTTTGAT
TTTAATGTGATGCTGGGCTGGAACAAGAAGAAAAACAGAAAAGAAAAGAA
AATAGAGAGCGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATTCAT
TAAATTGCACATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCCTTCTAT
GCCACTCGTATTGATCCTCCTAGGGGGATCAATGATACTTATTCCGAACA
CCCTGTGTCTGTGCTGTATATATGAATATATAAAAATATATGTTATCATT
ATTAATAGTGTTTTAATATATTTCTCTCCGCCGCCGCCGCCGCAGGGGAA
TCGACGTGCCGTCGGTGACTCGCATCGTTCAGATGGAAATGGCGACGAAC
GTGGTGAGACCAAGGAGCGCTTTGCGTTCTCAGACCAGCGCACTCGAAAT
GCCCCCTGTACGATTCGTTACCAGATAATATCACCCCTATCCCTACCCTA
CACTGGCCGGTGAAAATATTGTACCATATATACCATTATATAATTAAGCC
GCACACACTCTCTCTTTGCCTCTGTACCTTTTCTCTATTTCTCTCTATCC
GTCTCTGGGGTCCCTCTGTGTGCAAGGTTCATCACCTGCATCGGCTGGGG
CGAGCGGCGAGGGCGGGGAGAACCGGGAGAGCGACGAATTTCTTCGACAG
CTCCACTAAGGCAAGCCGTGGCTCTCTCCTTCATGGCCGTTAGGGATCGT
TCGTTACCTTCTCGATCGAATCCGACCGAACTGGCCGATGTGAAGCGACC
GCCTCTCTCCGAAAGCGTGTGTGGCTTTCGCTCCTTTTTATGAAGGGATG
GTGAAAAACAAAACAAAAAACAGTTTGTGGTCCACGACTGATCAACGCCT
TCTTGGCCTCTATATTGTTTCTAGGGAACAGAGATCAATTAGAGATTCGA
TGCGATGCGATGATGTCCGACATCCGCGGCATTTCTTATATGCAGTGCGC
GGTCGTAGTGTATTGTACATAGCACAGAAGGATCGGGGAGGGCAGGGAAG
GGGAGGAAAAGAGATGCAAAATTGGAATGTTGTCGAGCCCTCAGGAATCG
AGATTCGCATGAAACTGTAAAAACAAGGACTGCAAACTCTCTGTGATAAC
TCCACACCATCCCTACAACAAGTCCATCTTGTTCCTCCTCCCCCTGCTTT
ATCGTCTTGAGGACGTGTGGTCAATGGTCTCACAAGCTAAGTTAGGCATG
CAAAACTTGATGACACTCTCCCTCCCCGTCGTCCCTTACCCCTCCTCCTC
CCTTCAAAATATGCGCAGGACTTGGTGAACTCCATCAAGGAAGCCGAGGG
ATCGCGGCTGGACGGCTCGTTCAGCCGACAGCGGGGGTTCCGAAAGAAGT
TTAAGAAGTACGGCCCCAGCCGAACCTTCCAGGGACAGGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig12951:636..6379+

>mRNA_H-elongata_contig12951.2159.1 ID=mRNA_H-elongata_contig12951.2159.1|Name=mRNA_H-elongata_contig12951.2159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig12951:636..6379+ (Himanthalia elongata Himel1 dioecious)
GTGTTAGCGGCGGCGACCTTGCCGACGTACGGCCTAAAGTCCGTAGATCA
GTACATTAAGAGGGCGTTCCCTTCCGCCCACAAGATTCAACAGGTCCACA
TGCACAAGCATCACCCCGCCATCCAGCAGGTGTTAGCGGCGGCGACCTTG
CCGACGTACGGCCTAAAGTCCGTAGATCAGTACATTAAGAGGGCGTTCCC
TTCCGCCCACAAGATTCAACAGGTCCACATGCACAAGCATCACCCCGCCA
TCCAGCAGGAGTTCATAGAAGTTGGGAGGAAGGTTTCCGACAAGATTGAG
GCGCTCGCCGACCTGCTCTGCCGAGGAGTTCATAGAAGTTGGGAGGAAGG
TTTCCGACAAGATTGAGGCGCTCGCCGACCTGCTCTGCCGAGAGAATGAC
GTGGAACGAAGTCGGACGATGGTGTTCACCAACACCGCCGCTTCGTGCAG
GAGAATGACGTGGAACGAAGTCGGACGATGGTGTTCACCAACACCGCCGC
TTCGTGCAGGCTAGCGTGCGAGGCGCTCGCCGAAAGGGGTCTCTCCGTGG
TTCCGTACCACAAGGACGTGGCCCCCAAGGAACGCCTCGAGAACCTGACG
GCTCTCAAGAGTGGAAGGGCGAAGATCCTCGTCTGCACCGACCTCGCCGC
AAGCTAGCGTGCGAGGCGCTCGCCGAAAGGGGTCTCTCCGTGGTTCCGTA
CCACAAGGACGTGGCCCCCAAGGAACGCCTCGAGAACCTGACGGCTCTCA
AGAGTGGAAGGGCGAAGATCCTCGTCTGCACCGACCTCGCCGCAAGGGGA
ATCGACGTGCCGTCGGTGACTCGCATCGTTCAGATGGAAATGGCGACGAA
CGTGGGGAATCGACGTGCCGTCGGTGACTCGCATCGTTCAGATGGAAATG
GCGACGAACGTGGTTCATCACCTGCATCGGCTGGGGCGAGCGGCGAGGGC
GGGGAGAACCGGGAGAGCGACGAATTTCTTCGACAGCTCCACTAAGGCAA
GCCGTGGCTCTCTCCTTCATGGCCGTTCATCACCTGCATCGGCTGGGGCG
AGCGGCGAGGGCGGGGAGAACCGGGAGAGCGACGAATTTCTTCGACAGCT
CCACTAAGGCAAGCCGTGGCTCTCTCCTTCATGGCCCCGAGGGATCGCGG
CTGGACGGCTCGTTCAGCCGACAGCGGGGGTTCCGAAAGAAGTTTAAGAA
GTACGGCCCCAGCCGAACCTTCCAGGGACAGGGATAGCCGAGGGATCGCG
GCTGGACGGCTCGTTCAGCCGACAGCGGGGGTTCCGAAAGAAGTTTAAGA
AGTACGGCCCCAGCCGAACCTTCCAGGGACAGGGATAG
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