mRNA_H-elongata_contig129326.2148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig129326.2148.1
Unique NamemRNA_H-elongata_contig129326.2148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A6H5K9L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.960e-15
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            ACSY H+VVVTD      TWTFGGND GQLG GD+  R  P  +   +G+GVLSVACG+YHT
Sbjct:  201 ACSYSHTVVVTDDDR---TWTFGGNDYGQLGHGDRSSRSAPAALACFQGLGVLSVACGVYHT 259          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: D7G3F9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F9_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.960e-15
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    7 VWKVACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            V KVACSY H+VVVTD      TWTFGGN  GQLG GD   R  P  +   +G+GVLSVACG+YHT
Sbjct:  163 VTKVACSYSHTVVVTDDDR---TWTFGGNGYGQLGHGDHSSRSAPAALACFQGLGVLSVACGVYHT 225          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A2D4BZ91_PYTIN (RCC1 and BTB domain-containing protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ91_PYTIN)

HSP 1 Score: 68.2 bits (165), Expect = 9.050e-12
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 VWKVACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            V  +AC YYH+ VVT  +DG   WTFG N+ GQLG G K     PTPV+ L+ + ++ VACG YHT
Sbjct:  266 VVSLACGYYHTAVVT--ADGT-VWTFGRNEYGQLGLGHKRHVAVPTPVDTLRRVRIIQVACGCYHT 328          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A7S3XQJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ6_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 8.040e-11
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    7 VWKVACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIG--VLSVACGLYHT 204
            V +VACSYYHSVV TD       +TFG ND GQLG GD+  R  PT VE L G G    ++ACG YHT
Sbjct:  220 VTRVACSYYHSVVATDLDQ---LFTFGRNDFGQLGLGDRDDRAAPTEVEALGGGGRACSALACGQYHT 284          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A6A4ZT52_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZT52_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.620e-9
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS +VTD  D    +TFG NDCGQLGQ        P  V+ L+G  V  V+CGLYHT
Sbjct:  101 AVSYHHSAIVTDKGD---LYTFGMNDCGQLGQDTTTHVSEPQHVKALEGYIVTMVSCGLYHT 159          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A397B0U3_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B0U3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.800e-9
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS +VTD  D    +TFG NDCGQLGQ        P  V+ L+G  V  V+CGLYHT
Sbjct:  455 AVSYHHSAIVTDKGD---LYTFGMNDCGQLGQDTTTHVSEPQHVKALEGYIVTMVSCGLYHT 513          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A397AZ04_9STRA (Uncharacterized protein (Fragment) n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AZ04_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.820e-9
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS +VTD  D    +TFG NDCGQLGQ        P  V+ L+G  V  V+CGLYHT
Sbjct:  198 AVSYHHSAIVTDKGD---LYTFGMNDCGQLGQDTTTHVSEPQHVKALEGYIVTMVSCGLYHT 256          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A1V9ZV57_9STRA (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZV57_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.820e-9
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS VVTD  +    +TFG NDCGQLG      +  P  V+GL G  V  V+CGLYHT
Sbjct:  437 AVSYHHSAVVTDKGE---LFTFGMNDCGQLGTDSTAHQSVPMHVKGLDGHVVTMVSCGLYHT 495          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A3L6VRK1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRK1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.400e-9
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS +VTD  D    +TFG NDCGQLGQ        P  V+ L+G  V  V+CGLYHT
Sbjct:  455 AVSYHHSAIVTDKGD---LYTFGMNDCGQLGQDTTTHVSEPQHVKALEGYIVSMVSCGLYHT 513          
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Match: A0A3R7D679_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D679_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.590e-9
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   19 ACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPVEGLKGIGVLSVACGLYHT 204
            A SY+HS ++TD  +    +TFG NDCGQLGQ   +    P  V+ L+G  V  V+CGLYHT
Sbjct:  449 AVSYHHSAILTDKGE---LYTFGMNDCGQLGQDTTIHVSEPQHVKALEGYAVSMVSCGLYHT 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129326.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9L6_9PHAE1.960e-1561.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F9_ECTSI1.960e-1560.61BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2D4BZ91_PYTIN9.050e-1251.52RCC1 and BTB domain-containing protein, putative n... [more]
A0A7S3XQJ6_HETAK8.040e-1155.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A4ZT52_9STRA4.620e-951.61B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A397B0U3_9STRA4.800e-951.61B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A397AZ04_9STRA4.820e-951.61Uncharacterized protein (Fragment) n=8 Tax=Aphanom... [more]
A0A1V9ZV57_9STRA4.820e-951.61Regulator of chromosome condensation (RCC1)-like p... [more]
A0A3L6VRK1_9STRA6.400e-951.61Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7D679_9STRA6.590e-948.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129326contigH-elongata_contig129326:1421..1624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog2880.D7G3F9
KEGG koko:K11494
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929768.8542526-CDS-H-elongata_contig129326:1420..16241622929768.8542526-CDS-H-elongata_contig129326:1420..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129326 1421..1624 -
1691679150.514277-CDS-H-elongata_contig129326:1420..16241691679150.514277-CDS-H-elongata_contig129326:1420..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig129326 1421..1624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129326.2148.1prot_H-elongata_contig129326.2148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig129326 1421..1624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig129326.2148.1

>prot_H-elongata_contig129326.2148.1 ID=prot_H-elongata_contig129326.2148.1|Name=mRNA_H-elongata_contig129326.2148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
SAVWKVACSYYHSVVVTDGSDGVDTWTFGGNDCGQLGQGDKVRRLFPTPV
EGLKGIGVLSVACGLYHT
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mRNA from alignment at H-elongata_contig129326:1421..1624-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig129326.2148.1 ID=mRNA_H-elongata_contig129326.2148.1|Name=mRNA_H-elongata_contig129326.2148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig129326:1421..1624- (Himanthalia elongata Himel1 dioecious)
TCCGCCGTCTGGAAGGTGGCATGCTCGTATTACCATTCCGTAGTGGTAAC GGACGGTAGTGACGGAGTTGACACGTGGACCTTCGGCGGAAACGATTGCG GCCAGCTGGGGCAAGGAGACAAAGTCCGGCGCTTATTTCCCACTCCAGTG GAAGGTCTCAAAGGGATCGGTGTCCTGAGCGTGGCTTGTGGGCTTTACCA CACG
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Coding sequence (CDS) from alignment at H-elongata_contig129326:1421..1624-

>mRNA_H-elongata_contig129326.2148.1 ID=mRNA_H-elongata_contig129326.2148.1|Name=mRNA_H-elongata_contig129326.2148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig129326:1421..1624- (Himanthalia elongata Himel1 dioecious)
TCCGCCGTCTGGAAGGTGGCATGCTCGTATTACCATTCCGTAGTGGTAAC
GGACGGTAGTGACGGAGTTGACACGTGGACCTTCGGCGGAAACGATTGCG
GCCAGCTGGGGCAAGGAGACAAAGTCCGGCGCTTATTTCCCACTCCAGTG
GAAGGTCTCAAAGGGATCGGTGTCCTGAGCGTGGCTTGTGGGCTTTACCA
CACGTCCGCCGTCTGGAAGGTGGCATGCTCGTATTACCATTCCGTAGTGG
TAACGGACGGTAGTGACGGAGTTGACACGTGGACCTTCGGCGGAAACGAT
TGCGGCCAGCTGGGGCAAGGAGACAAAGTCCGGCGCTTATTTCCCACTCC
AGTGGAAGGTCTCAAAGGGATCGGTGTCCTGAGCGTGGCTTGTGGGCTTT
ACCACACG
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