mRNA_H-elongata_contig102459.215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102459.215.1
Unique NamemRNA_H-elongata_contig102459.215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.250e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:    1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
            R+RP  A CMP++QR QGC PLLP IG   +   VVDH+  E      LS++ SDLPCVQ+GTCPVP FRC KGHVW  NG PVCFYCP+CAD+R+T      ++K+DLE M+++A+ +GG C+++ Y G
Sbjct:   17 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 143
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BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.490e-42
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:    1 RKRPPFALCMPRHQRQQGCAPLLP-IGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQSGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAYRG 387
            R+RP  A CMP++QR QGC PLLP IG   +   VVDH+  E      LS++ SDLPCVQ+GTCPVP FRC KGHVW  NG PVCFYCP+CAD+R+T      ++K+DLE M+++A+ +GG C+++ Y G
Sbjct:  194 RRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLG 320
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BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Match: A0A7H1MJB4_RALSL (Uncharacterized protein n=5 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A7H1MJB4_RALSL)

HSP 1 Score: 50.8 bits (120), Expect = 7.880e-5
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  202 FRCPKGHVWASNGKPVC--FYCPVCADSRVTRFGHERRQKKDLEVMKDLAKARGGVCLSKAY 381
            FRC +GH W + G  V    +CP CA  R          ++ +EVM+++A ARGG C+S++Y
Sbjct:  174 FRCAQGHEWETRGVTVTQGTWCPTCARDR---------SRRGIEVMREMAAARGGRCISESY 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102459.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQ22_ECTSI2.250e-4354.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCH6_9PHAE6.490e-4254.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7H1MJB4_RALSL7.880e-538.71Uncharacterized protein n=5 Tax=Ralstonia solanace... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102459contigH-elongata_contig102459:56..1355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_007770.1
Exons3
Model size387
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102459.215.1prot_H-elongata_contig102459.215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102459 56..1328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.469787-CDS-H-elongata_contig102459:55..2271622929562.469787-CDS-H-elongata_contig102459:55..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 56..227 -
1691679071.4137652-CDS-H-elongata_contig102459:55..2271691679071.4137652-CDS-H-elongata_contig102459:55..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 56..227 -
1622929562.491421-CDS-H-elongata_contig102459:780..9021622929562.491421-CDS-H-elongata_contig102459:780..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 781..902 -
1691679071.4223318-CDS-H-elongata_contig102459:780..9021691679071.4223318-CDS-H-elongata_contig102459:780..902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 781..902 -
1622929562.5086312-CDS-H-elongata_contig102459:1262..13281622929562.5086312-CDS-H-elongata_contig102459:1262..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 1263..1328 -
1691679071.4312332-CDS-H-elongata_contig102459:1262..13281691679071.4312332-CDS-H-elongata_contig102459:1262..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102459 1263..1328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.526673-UTR-H-elongata_contig102459:1328..13551622929562.526673-UTR-H-elongata_contig102459:1328..1355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102459 1329..1355 -
1691679071.4468453-UTR-H-elongata_contig102459:1328..13551691679071.4468453-UTR-H-elongata_contig102459:1328..1355Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102459 1329..1355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102459.215.1

>prot_H-elongata_contig102459.215.1 ID=prot_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MPRHQRQQGCAPLLPIGEVDRIDAVVDHIVSEPMVRAKLSDFASDLPCVQ
SGTCPVPAFRCPKGHVWASNGKPVCFYCPVCADSRVTRFGHERRQKKDLE
VMKDLAKARGGVCLSKAYRG
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mRNA from alignment at H-elongata_contig102459:56..1355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious)
CGAAAGCGCCCGCCGTTCGCCTTGTGCATGCCGAGGCACCAACGTCAACA
AGGATGCGCCCCGCTTCTTCCCATCGGTGAGGTAGATCGGATCGTATAGA
GGACATTCCGCGCGCGCGCGACAAGAGTATATTGTTTTGTGCGATACATG
AAGTATAGGAGGTTCCCGCAGAGTGGGTCTCGACCAGCGCAGCGTTCCTG
TGTATGTGCATAACTTTTCCCGGATATCAGTGTGGCGGTACTGTACGGTA
CAGTATGTGGGCGCGTCTTGATCGTAGGAAAAGAGCACACTCCAGTTTGC
ACCCAATAGCCGCTTATCGAAGTATTGACAAGCAGTTTGCGTAGAATTAG
GTATGCAATGTTTCTTGTTCGTATCCAAGCTTCTCGTCCCCTCTGCCCCC
GCTTGCTTATCATTTGACAAACGACGATCGTGCCGTTATCGCTAGAAAAC
AAGGATGCGGTGGTGGATCACATCGTCTCGGAGCCGATGGTGCGCGCGAA
GCTCTCGGACTTCGCGTCTGACCTCCCCTGTGTCCAGAGCGGGACGTGCC
CCGTGCCGGCCTTTCGCTGTCCCAAGTGAGTGACAATCGTGTGAAATATG
TCCCTTTTTTTTTTAGGAAGGATACCGGATGCGCGGGGGATCAGCGCAAC
TTACTGAAGCACGCGTGCGTGAAATTAGGTGTTCGCCGCACTTGCCTTGT
AGGGAATTAGATTCGCGGTTGTGAGTTATGCCCCAATACACTCAGGTGTA
CTAATGGCGCAGACACGAGCGTCTCTACTCTCGCGGAGTTTCGCGCGTAC
CCCTGTGGTTTAACATTTTGCGTACGCGAAAGACGCATCGCCTCGGGTTA
AAACAAAAATAGAAGGCGTCCGCCGACACCCTACCGAGTATTGTGCTCCC
ACGGGGATCGAAGAGGGACACAAGAAACACGCCCATCGCGCTCTTCGGAA
ACCCTCGCGCGGTCGGTACGCGTGCTTCTGTTTACAATGAGCACCACTTC
ATTCTCATTCTTTCCTTCAACATCCCTGGAAATACCCGCGCGGACGGTAC
CCGTGCTCCTGGTTACGACGAGCACTTCTTCCCTTTCACTATTTCCTCCA
ACATCCCGACACGTTGACACGTTCAAAGAGGCCACGTGTGGGCCTCGAAC
GGCAAGCCGGTGTGTTTTTACTGCCCTGTCTGCGCGGACTCGAGGGTGAC
AAGGTTCGGACACGAGAGGCGACAGAAGAAAGACCTGGAGGTGATGAAGG
ATCTGGCCAAAGCGCGGGGTGGCGTCTGCCTCTCCAAGGCTTACCGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig102459:56..1355-

>mRNA_H-elongata_contig102459.215.1 ID=mRNA_H-elongata_contig102459.215.1|Name=mRNA_H-elongata_contig102459.215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig102459:56..1355- (Himanthalia elongata Himel1 dioecious)
ATGCCGAGGCACCAACGTCAACAAGGATGCGCCCCGCTTCTTCCCATCGG
TGAGGTAGATCGGATCATGCCGAGGCACCAACGTCAACAAGGATGCGCCC
CGCTTCTTCCCATCGGTGAGGTAGATCGGATCGATGCGGTGGTGGATCAC
ATCGTCTCGGAGCCGATGGTGCGCGCGAAGCTCTCGGACTTCGCGTCTGA
CCTCCCCTGTGTCCAGAGCGGGACGTGCCCCGTGCCGGCCTTTCGCTGTC
CCAAGATGCGGTGGTGGATCACATCGTCTCGGAGCCGATGGTGCGCGCGA
AGCTCTCGGACTTCGCGTCTGACCTCCCCTGTGTCCAGAGCGGGACGTGC
CCCGTGCCGGCCTTTCGCTGTCCCAAAGGCCACGTGTGGGCCTCGAACGG
CAAGCCGGTGTGTTTTTACTGCCCTGTCTGCGCGGACTCGAGGGTGACAA
GGTTCGGACACGAGAGGCGACAGAAGAAAGACCTGGAGGTGATGAAGGAT
CTGGCCAAAGCGCGGGGTGGCGTCTGCCTCTCCAAGGCTTACCGCGGTAG
GCCACGTGTGGGCCTCGAACGGCAAGCCGGTGTGTTTTTACTGCCCTGTC
TGCGCGGACTCGAGGGTGACAAGGTTCGGACACGAGAGGCGACAGAAGAA
AGACCTGGAGGTGATGAAGGATCTGGCCAAAGCGCGGGGTGGCGTCTGCC
TCTCCAAGGCTTACCGCGGT
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