mRNA_H-elongata_contig128523.2100.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128523.2100.1
Unique NamemRNA_H-elongata_contig128523.2100.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: D8LGN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.120e-38
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:    1 PPKIPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTNGGKDYTQRRDELVAALRRFEAAPFTLQRLAEVLQ 261
            PPKIP ELEGVLREIAAVGVPYYGWG LKELL ARM++AV +L +++GF R  GGKDY QRRDELVA+LRRF+AAPFTLQRLAEVLQ
Sbjct:   69 PPKIPPELEGVLREIAAVGVPYYGWGGLKELLAARMSQAVGALRKDSGFFRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQ 155
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: A0A835ZCH9_9STRA (Protein phosphatase 4 core regulatory subunit R2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.090e-21
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:   10 IPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTNGGKDYTQRRDELVAALRRFEAAPFTLQRLAEVL 258
            IP ELE VL E+A  GVPYY W  L+ELL A++   ++      G++   GG+ +TQR+ +LV ALR F+ APFTLQRLAEVL
Sbjct:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVL 83
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: R7TSH7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TSH7_CAPTE)

HSP 1 Score: 53.1 bits (126), Expect = 1.030e-6
Identity = 29/89 (32.58%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:   10 IPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTN------GGKDYTQRRDELVAALRRFEAAPFTLQRLAEVL 258
            IPE LE  L+ IA  G   + WG LK L   R+++A+          ++N          +   RD ++ A++ F  APFT+QRL E++
Sbjct:   22 IPEILESYLKHIAKTGTTVFPWGKLKPLFEQRLSQAISEFHERFPMDKSNVVSANVESLSFDVMRDRILEAIKTFSGAPFTIQRLCELI 110
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: A0A6B2LEP6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEP6_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 2.870e-6
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   10 IPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTNGGKDYTQRRDELVAALRRFEAAPFTLQRLAEVL 258
            IPE LEGV+ +I+  GV  Y W  LKEL+  +M   +        + +     ++ Q +  L   LR+F  APFTLQR+ E+L
Sbjct:   13 IPEILEGVIVDISKTGVTCYPWPLLKELIVTKMVLVLNE------YNQKTPHNNFDQEKTRLSEMLRQFPEAPFTLQRITELL 89
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: A0A6S8BB95_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BB95_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.060e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   22 LEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTNG----GKDYTQRRDELVAALRRFEAAPFTLQRLAEVL 258
            L  +L  +   GVP Y W  LK L++  + ++V    +    Q T+     G  +  +RD LV++L  F+ APFTLQRL E++
Sbjct:   24 LRSILETMRKYGVPQYEWSELKPLVSQALTQSVNEFRK--NHQNTDPEDKPGHSFEDQRDRLVSSLNVFDGAPFTLQRLCELI 104
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BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Match: A0A2R5GI57_9STRA (Serine/threonine-protein phosphatase 4 regulatory subunit 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI57_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.280e-5
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    7 KIPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQRTNGGKD----YTQRRDELVAALRRFEAAPFTLQRLAEVL 258
            ++ ++L GVL ++   GVP Y W  LK L+     +A+++  +E     T+  +     Y  ++  L++A+  FE APFTLQRL E++
Sbjct:   13 QVTDKLRGVLEDMRTTGVPKYEWALLKPLVHVATEQALDNFRKE--HPNTDPVEQDQPAYDAQKQRLLSAIDLFEGAPFTLQRLCELI 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128523.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGN8_ECTSI2.120e-3880.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCH9_9STRA2.090e-2153.01Protein phosphatase 4 core regulatory subunit R2 (... [more]
R7TSH7_CAPTE1.030e-632.58Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A6B2LEP6_9EUKA2.870e-637.35Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6S8BB95_9STRA2.060e-534.94Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5GI57_9STRA4.280e-532.95Serine/threonine-protein phosphatase 4 regulatory ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128523contigH-elongata_contig128523:67..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.6e-31
Seed eggNOG ortholog2880.D8LGN8
Preferred namePPP4R2
KEGG rclassRC02795
KEGG koko:K00962,ko:K15425
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
GOsGO:0000018,GO:0000278,GO:0000775,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006282,GO:0006464,GO:0006807,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008287,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010569,GO:0010646,GO:0010648,GO:0010921,GO:0015630,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030234,GO:0030289,GO:0030674,GO:0031323,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045879,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0060090,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0098687,GO:0098772,GO:1901564,GO:1902494,GO:1903293,GO:2000779,GO:2001020
EggNOG free text desc.protein phosphatase regulator activity
EggNOG OGsKOG3175@1,KOG3175@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03016,ko03019,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.0608995-CDS-H-elongata_contig128523:66..1421622929764.0608995-CDS-H-elongata_contig128523:66..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128523 67..142 -
1691679148.5701697-CDS-H-elongata_contig128523:66..1421691679148.5701697-CDS-H-elongata_contig128523:66..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128523 67..142 -
1622929764.0736084-CDS-H-elongata_contig128523:715..9001622929764.0736084-CDS-H-elongata_contig128523:715..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128523 716..900 -
1691679148.5799146-CDS-H-elongata_contig128523:715..9001691679148.5799146-CDS-H-elongata_contig128523:715..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128523 716..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128523.2100.1prot_H-elongata_contig128523.2100.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128523 67..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128523.2100.1

>prot_H-elongata_contig128523.2100.1 ID=prot_H-elongata_contig128523.2100.1|Name=mRNA_H-elongata_contig128523.2100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
PPKIPEELEGVLREIAAVGVPYYGWGALKELLTARMAEAVESLEREAGFQ
RTNGGKDYTQRRDELVAALRRFEAAPFTLQRLAEVLQ
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mRNA from alignment at H-elongata_contig128523:67..900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128523.2100.1 ID=mRNA_H-elongata_contig128523.2100.1|Name=mRNA_H-elongata_contig128523.2100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig128523:67..900- (Himanthalia elongata Himel1 dioecious)
CCCCCCAAGATCCCGGAGGAGTTGGAAGGTGTTCTCCGAGAGATTGCCGC
CGTCGGCGTGCCGTACTACGGGTGGGGGGCGCTGAAGGAGTTGCTGACCG
CGAGGATGGCGGAAGCGGTGGAGTCTTTGGAGAGGGAGGCGGGGTTCCAA
AGGACCAACGGCGGGAAGGATTACACGCAGCGAAGGTTCGGTTCGTCCCG
ATTGTTCGTTTTTTTTAAAGTCTTGCTCGGGGAGATTCGGCTTGTCTAGG
TTCTAATTTTGGTTTCGATTCAGTTTGGCCCGATTTGGATTATATCGATT
AGGTTTTTGTTGTTGATTTTTTCACGCATGTCGTTACCCTCTTCCACGCC
CAACGTGGTCGTACCATGCCATGCCATGCCGTACTATGCTATGATATGCT
GGCAGCAGTGGTTTGGGAGTAGCGGATTTAAAAGGCCGAGGCAGCTTCTT
CTATGCATTCTAGGGCTCTGTGGTCTGTGCTCTGTTGTTGTTTCATTTGT
ACGACGGGACTGTGAACGGGACTGTTCCTTTGATCGAATACATAAAATTG
GTACGTAAAGCCCCTCAAGTAGTTATCATTTTTTCCGTGTGTGCTACATA
CGAGCATCGGAGATTTTCCCGTCGCGGTTCAGTTGGCACGCGCTCGGGGC
AATCATTGTTTTTTCTCGGCGTCCCCGTTGTGCTCGACGTCCTCTATTCG
CACTATCGAATCAAATCGGATTGGATTGGATCGGATTGGATCATCCGCGG
CCTTAAAGAGACGAGCTCGTAGCCGCTCTGCGAAGGTTCGAGGCGGCGCC
TTTCACTCTCCAGCGCCTGGCCGAGGTATTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig128523:67..900-

>mRNA_H-elongata_contig128523.2100.1 ID=mRNA_H-elongata_contig128523.2100.1|Name=mRNA_H-elongata_contig128523.2100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig128523:67..900- (Himanthalia elongata Himel1 dioecious)
CCCCCCAAGATCCCGGAGGAGTTGGAAGGTGTTCTCCGAGAGATTGCCGC
CGTCGGCGTGCCGTACTACGGGTGGGGGGCGCTGAAGGAGTTGCTGACCG
CGAGGATGGCGGAAGCGGTGGAGTCTTTGGAGAGGGAGGCGGGGTTCCAA
AGGACCAACGGCGGGAAGGATTACACGCAGCGAAGCCCCCCAAGATCCCG
GAGGAGTTGGAAGGTGTTCTCCGAGAGATTGCCGCCGTCGGCGTGCCGTA
CTACGGGTGGGGGGCGCTGAAGGAGTTGCTGACCGCGAGGATGGCGGAAG
CGGTGGAGTCTTTGGAGAGGGAGGCGGGGTTCCAAAGGACCAACGGCGGG
AAGGATTACACGCAGCGAAGAGACGAGCTCGTAGCCGCTCTGCGAAGGTT
CGAGGCGGCGCCTTTCACTCTCCAGCGCCTGGCCGAGGTATTGCAGAGAC
GAGCTCGTAGCCGCTCTGCGAAGGTTCGAGGCGGCGCCTTTCACTCTCCA
GCGCCTGGCCGAGGTATTGCAG
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