mRNA_H-elongata_contig128504.2098.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: D7FPR6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR6_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.440e-42 Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALA 267
VFICVEGDDIGKLLDVRNK TCPCFTNFA KSSEELK LLE A QKE LI HWGK++ EE NIDREL+WL+SVDP+KAD+AAV+ALA
Sbjct: 162 VFICVEGDDIGKLLDVRNKETCPCFTNFANKSSEELKGLLETALTTQKEALIAHWGKNVAEEANIDRELKWLKSVDPAKADKAAVRALA 250
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7R9WKG9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKG9_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.960e-22 Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
V++C GDD+GK+LD R+ +TCPCF+NFAKK+SEEL +L A QKE LI G+ E +D+ RW R +D +KADR A + L AK+
Sbjct: 133 VYVCTSGDDVGKILDHRDPATCPCFSNFAKKTSEELVEMLVTAIANQKEQLIDAEGEGTATERELDQLERWARKLDTAKADREAGRVLKAAKM 225
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7S4JR08_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JR08_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.960e-20 Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
V++C GDD+GK++D R+ STCP F NFAKK SEEL +L A KQKE LI G+D E ++D W R ++ +KAD+ A K L AKI
Sbjct: 204 VYVCTSGDDVGKIIDHRDPSTCPSFANFAKKGSEELVEMLMEAITKQKEQLIAAEGEDTDTEGDLDELELWARRLNTTKADKQAEKVLKAAKI 296
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A448ZDW2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDW2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.380e-17 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKIN 282
VFIC +G+++G + D R+K PCF NFA+KSSEELK LL A +QK L+ G E +D L+W + V+ KAD A K L K++
Sbjct: 173 VFICTQGEEVGTIKDFRDKENTPCFNNFARKSSEELKELLVEAINEQKRQLVQAEGTGTATEKELDTMLKWAKKVNAKKADTEAAKILKANKLS 266
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: B7GAB3_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAB3_PHATC) HSP 1 Score: 81.6 bits (200), Expect = 1.340e-16 Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKIN 282
V++C EGD +G++ D+R+K+TCP F F +K +EEL++LL A +Q+ L+ G P E ID+ ++W + V+ +KAD+ AVK L + ++
Sbjct: 182 VYVCTEGDKVGQIRDLRDKTTCPSFQIFVRKDAEELRQLLLKALEEQRAQLVAKEGSGTPTEKEIDQLVKWAKKVNTTKADKDAVKVLKASGLS 275
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A7S1ZF89_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF89_TRICV) HSP 1 Score: 79.0 bits (193), Expect = 2.110e-15 Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
V++C +G ++GK++D R+K TCP FTN+AK+SSE+L +L A Q+E LI G E ++D+ W + ++ +K DR A K L AK+
Sbjct: 222 VYVCTKGSEVGKIVDYRDKETCPSFTNYAKRSSEDLVEMLCQAINTQREQLIKAEGSGTETERDLDKLQSWAQGLNTAKLDRDADKVLRAAKL 314
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: K0SGW2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGW2_THAOC) HSP 1 Score: 71.6 bits (174), Expect = 9.660e-13 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKALAQAKI 279
++IC +G ++G+ +D+R+KS P F NFA+KSSEEL+R+L A Q+ L+ G EV + R W + + KAD+ A K L ++
Sbjct: 211 MYICTQGSEVGQFMDLRDKSNAPSFNNFARKSSEELRRMLLTAIENQRTALVGAEGGGSGVEVELKRLESWAKKLKCDKADKEATKVLKAQRL 303
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A6U4BZW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4BZW5_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.530e-9 Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 1 VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPE-EVNIDRELRWLRSVDPSKADRAAVK 258
V+ICVEGD IG ++D R+ S+CP NF + +E LK L A QKE L G +D ++RW V+P+ AD+ A +
Sbjct: 216 VWICVEGDGIGAIVDRRDMSSCPNAANFCRLPAELLKTKLLAALAAQKEALTAREGDGATALAAKLDSDMRWASKVNPTTADKEAAR 302
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A425C4L8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4L8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.440e-8 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 4 FICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAAVKAL 264
+I V+GDD+G ++D R + P F +F SSE+L++LL +A+ KQ E+LI H G D P + + ++ KADR+ K L
Sbjct: 166 YIRVKGDDLGSIIDTRLSAGKPSFLHFFAMSSEDLQKLLLLAYDKQMEVLIEHEGSDTPLLKELQKARASAARINTEKADRSIQKVL 252
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Match: A0A0P1AE59_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE59_PLAHL) HSP 1 Score: 58.2 bits (139), Expect = 6.780e-8 Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 4 FICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMLITHWGKDLPEEVNIDRELRWLRSVDPSKADRAA 252
FI V+GDD+G ++D R+ P F +F S+EL +LL +A+ KQ E+L+ H G D+P + + ++ KADR+A
Sbjct: 174 FIRVKGDDLGSIIDTRSSIGKPSFLHFFAMPSDELLKLLLLAYDKQMEVLVEHEGPDIPLVKELQKARASAARINVDKADRSA 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128504.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig128504.2098.1 >prot_H-elongata_contig128504.2098.1 ID=prot_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp VFICVEGDDIGKLLDVRNKSTCPCFTNFAKKSSEELKRLLEVAFLKQKEMback to top mRNA from alignment at H-elongata_contig128504:1..1333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig128504.2098.1 ID=mRNA_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1333bp|location=Sequence derived from alignment at H-elongata_contig128504:1..1333+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig128504:1..1333+ >mRNA_H-elongata_contig128504.2098.1 ID=mRNA_H-elongata_contig128504.2098.1|Name=mRNA_H-elongata_contig128504.2098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig128504:1..1333+ (Himanthalia elongata Himel1 dioecious)back to top |