prot_H-elongata_contig12721.2020.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12721.2020.1
Unique Nameprot_H-elongata_contig12721.2020.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length307
Homology
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BLAST of mRNA_H-elongata_contig12721.2020.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.260e-24
Identity = 100/238 (42.02%), Postives = 119/238 (50.00%), Query Frame = 0 
Query:   74 VLPPKWYSAGRGVDDLLNQAERLDWIADSGGT---EDPATAEPAAAASLGLKVGIPATIPMSAGRVPSDLH---QPSLKRVRSSGCAPSGLVNSSAAVASLENSAAPNPAATTTAFTTSMRACVVSVDGQPHQSASLPLVCPLASISVSGTNAPTFGVSCNGDGSGLSPSGLRGSDAEEERLSGLSDFEGLIEDQDLTGTPPLGAVSDESCVAGASGIENNAAAGGMDEDAFVAALLD 305
            VLPP WY AGRGVDDLL +AE LDW+ADSGG       +   PAAA          A       RV S      QP LK+VRS+       V+SSA +A+       N                         S SLP   P+A         PT GV+ +     L+PSGL+GSDAEE  LSGLSD E L+EDQ+L G+ P G VS  + VAGA G  +    G +DEDAFV ALLD
Sbjct:  187 VLPPNWYRAGRGVDDLLTEAEGLDWLADSGGAVAVTSVSAVNPAAAXXXXXXXXXVAGAHAGVARVASSSELSSQPLLKKVRST------TVDSSAPLATATTM---NXXXXXXXXXXXXXXXXXXXXAMTPSSWSLPPPRPVACPXXXAP--PTAGVAVDE----LTPSGLQGSDAEEGHLSGLSDLESLMEDQELPGSQPFGPVSTAAEVAGAGG--DGMDDGMVDEDAFVNALLD 407
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BLAST of mRNA_H-elongata_contig12721.2020.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.910e-10
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0 
Query:  234 LSPSGLRGSDAEEERLSGLSDFEGLIEDQDLTGTPPLGAVSDESCVAGASGIENNAAAGGMDEDAFVAALLD 305
            L+PSGL+GSDAEE  LSGLSD E L+EDQ+L G+ P G VS  +  AGA+G  +    G +DEDAFV ALLD
Sbjct: 1086 LTPSGLQGSDAEEGHLSGLSDLESLMEDQELPGSQPFGPVSTAAEAAGAAG--DGMDDGVVDEDAFVDALLD 1155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12721.2020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G656_ECTSI3.260e-2442.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H1_9PHAE2.910e-1059.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12721contigH-elongata_contig12721:1484..4074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12721.2020.1mRNA_H-elongata_contig12721.2020.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12721 1484..4946 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12721.2020.1 ID=prot_H-elongata_contig12721.2020.1|Name=mRNA_H-elongata_contig12721.2020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=307bp
MRDERPLSDINGPPIAAAGQGAGPRGYVGAAGAGGNVASGSSRPLLSQSP
LACTGGSAVTAGVTAAEATEVVAVLPPKWYSAGRGVDDLLNQAERLDWIA
DSGGTEDPATAEPAAAASLGLKVGIPATIPMSAGRVPSDLHQPSLKRVRS
SGCAPSGLVNSSAAVASLENSAAPNPAATTTAFTTSMRACVVSVDGQPHQ
SASLPLVCPLASISVSGTNAPTFGVSCNGDGSGLSPSGLRGSDAEEERLS
GLSDFEGLIEDQDLTGTPPLGAVSDESCVAGASGIENNAAAGGMDEDAFV
AALLDG*
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