mRNA_H-elongata_contig10232.202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10232.202.1
Unique NamemRNA_H-elongata_contig10232.202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10232.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10232contigH-elongata_contig10232:5710..8448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size216
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10232.202.1prot_H-elongata_contig10232.202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10232 5722..8364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.3258908-UTR-H-elongata_contig10232:5709..57211622929561.3258908-UTR-H-elongata_contig10232:5709..5721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10232 5710..5721 -
1691679070.874622-UTR-H-elongata_contig10232:5709..57211691679070.874622-UTR-H-elongata_contig10232:5709..5721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10232 5710..5721 -
1622929561.3754148-UTR-H-elongata_contig10232:8364..84481622929561.3754148-UTR-H-elongata_contig10232:8364..8448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10232 8365..8448 -
1691679070.9112248-UTR-H-elongata_contig10232:8364..84481691679070.9112248-UTR-H-elongata_contig10232:8364..8448Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10232 8365..8448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.3432436-CDS-H-elongata_contig10232:5721..57991622929561.3432436-CDS-H-elongata_contig10232:5721..5799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10232 5722..5799 -
1691679070.8896792-CDS-H-elongata_contig10232:5721..57991691679070.8896792-CDS-H-elongata_contig10232:5721..5799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10232 5722..5799 -
1622929561.3604536-CDS-H-elongata_contig10232:8322..83641622929561.3604536-CDS-H-elongata_contig10232:8322..8364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10232 8323..8364 -
1691679070.8996508-CDS-H-elongata_contig10232:8322..83641691679070.8996508-CDS-H-elongata_contig10232:8322..8364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10232 8323..8364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10232.202.1

>prot_H-elongata_contig10232.202.1 ID=prot_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MIELWDAWKDSSVKVAASLADDVNIVGAGINHNFILQPD*
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mRNA from alignment at H-elongata_contig10232:5710..8448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2739bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
TATAGGCACCGGTATGCCGCGAGCAAGTTGCAGCTCAGCAGACAGAAGTT
TGACAGGAAGGAGACTGGGAAGAAGAGGCACACCATGATCGAATTGTGGG
ATGCATGGAAGGATTCCTCAGTAAAGGTGAATGAGCTGTTAAATTTCTCG
CCGTTTCGATAAACCACTTTTGTCTTGTTGAGGGCTTAAACCGACATCAT
TACAAAGGGCGACCCTTTGAACTCTATGTAGGTAAACTACGCAATACCGA
ACAAGTTTATATATCCCGCTTCCACCGATTTGTCTTTTTGCTGTTCATGC
GCGTGTTCGCTTTGCACCAATATTGCCCCGACCATTGCACGAACGGACGA
AATGTTGGGGTGGAATACATGTATGCATGGTAGGGCCAGGGTGCTTTTCG
TTCTATTTTTCCGTGTTGTTCATTTTGAGACAACAAAGTGTTGTAGTCTG
TATTTGAGAAACGGTCCTTCCCATCGAAGTTTTCTTGTGTATACCAGTCT
TGTTTTACCCCCAATAATTGCTTTGCCGGAATTTCCCTTTTCTTCCTTTT
TGGTGATCGCCCTCCACACTATAGTGTCCGCCCTATAGTGTTGTCTTCCC
GAAAATACAATCAGAACCCAGAGGCGTTGACAGAGGATATTCTGGCCTGT
TGATGAGAAGCGCGCACATGATATCCCAAATTTTTACCTGTGATGGTACA
TTTCTTGTTGTTGTTGTTGTTGGTCACACATTTAGCAAAAGATCAACCGG
ATTTGGTTGCCTTCTTCTCTTGGTCAGATGAACAGGAAAAACAATTTTCC
CCCGTCCCACGTGGAAGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGC
AGTCCCGTCCCGCGTCAGCCTGCTCATTCTCCCAACCCAGGCTGAATACG
GTCCTTGCTCCCGGTATCCTCTCGATTCTCCCGTTTTCCGCGAAAGTGTC
CATTTCTAACGTCAACCGCCATCGGACCAATCCCGATTTCATCACGTCAC
CACGCAATTGCGTACCGATGGCGTTTACCACCGAGAGTCCACCGACACTG
AGCCAGCAAACCTCAAGGTAGCCCGAGTAACGGGTGAAGCCTATTCAGGG
AACCCCATGGACCAATTATTGTACGCTTCTATTTTCCCACACACACTATG
GGTAGAGTGGGCATGACGGTTGCTTGAAAGACGCACATGTTTTTTTTAAG
CGTCTTCAACGCAGGGAAGCGCCTTTAAGGTTTCAGGGGGCGATTTCTCA
TTATCCCCGGGGTCAATGGAGGCATGTTGTACGTCAAACGATGCGTCTTA
GCGAGGCGAGTGGTAGCGCGAAAGGGAATAAAACATAAGGCGGTGGGTAA
GCCGGGATACCTTCTTCAAAGCAACAAGTGTTTTTGTACAACAGTAGTAG
TATGTACGTATGCTATAAAAATGCTCTACCCCTTCCATAAACCATGAATA
GTTGCCTGCACTTACTCCTGCTCCTTCCCTCTACGCTTGACTTGAATCTT
ATGAATGAACGAATGCAAAGGTTTCGAAAGAAGGTAATGTGCTTCGCTGT
ACTCGCCTTCCCTTCCCTTCGCATACAAATAGGAGCGAATTGCCTCAAAA
CTTGAGTGGACCTCAGCCTCTTCGATCGACGATGTTATTATTAAAACCCA
TATGAACTCATTAGAACTCTCCGAACATCCACGCCTCCTTAACATCTCGC
GAGGTGTAATCCAGGGGACCGACTATCGTCAATTTCGAAAGTGGACATTT
TTACTACATTTAAGCACAAAATCGTCATATATGTGATTATTCATTATATG
GGGACGCCAAATCGGAGCCTAGGGGATGAACTGTGTGTGGTGGTTAGGAA
GGGTTAGGTACAGCATTGTTTAAAGCTTCTGGAAGCATATTAGACTAACC
TAGAGGGTATCTTTCAGTAGCAACATTTTTAGTGCACGACTCTGGCTTAC
CGCCGCCTCCTTCCCCTTCGCTTGATAAATTAGCGTCCACTTCCACGGTA
CTGCTGAGACTGTCGGTCTTGTCCCCAGGTGTGATATTTTGGCAGGCTGT
ACACTCTCTCTGCTGACCATAGCCTTCCTCCCCAATGCCGCGACAGCAAA
AACCGTGTAACCACTGCCCGCACGGGCACTGGTCCACGGGACCGACAGGC
CCTGGTGGCGTGCATATAGGTTCTTCGCATCTCTTCGTACCAGACGCCGA
TGACGCACCTGTAGTTGGAAGAAATCTTCTCATATTGCACCCGCAGCTGC
CGCAACAGAAATATAGCTGTTCTCTCTGTGGGCAGGGGTCTACCCGCTTG
TCTCTCAAGGGGGGACGCAGAATAAAAAGACCCCCCCCCCCTATATTTAT
ATTTAAAACCCTTGAATTCATTAGAACCCTTCGAACATCCACGCCTTTAA
CCTCTAGGGAACCCGATTTGTTTTTTCCATACTAAATATATAACAAAACT
TGAAATCCAGTTTCAAAAGGGTTAAAGCGGGGGCGACTATTTGTTTGTGC
CCTTTCTGGTGCCGCGACAATTGGAGACAACCGCGAATACAGACCTAGTG
TACTAGCTGTAGTGCTATGTGATAAGTATTGTACAGATAAAGCCAAAGTT
GAAGATCATTTTGACTGACCAAGTTCGTGAATTTTTGTTACTGGTATAGG
TGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGGTGCGGGCATCAAC
CACAACTTCATCCTACAGCCTGACTGATCATTCGATAAG
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Coding sequence (CDS) from alignment at H-elongata_contig10232:5710..8448-

>mRNA_H-elongata_contig10232.202.1 ID=mRNA_H-elongata_contig10232.202.1|Name=mRNA_H-elongata_contig10232.202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig10232:5710..8448- (Himanthalia elongata Himel1 dioecious)
ATGATCGAATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGATGATCGA
ATTGTGGGATGCATGGAAGGATTCCTCAGTAAAGGTGGCCGCGAGTCTTG
CAGACGACGTGAACATCGTTGGTGCGGGCATCAACCACAACTTCATCCTA
CAGCCTGACTGAGTGGCCGCGAGTCTTGCAGACGACGTGAACATCGTTGG
TGCGGGCATCAACCACAACTTCATCCTACAGCCTGACTGA
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