mRNA_H-elongata_contig126615.1978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126615.1978.1
Unique NamemRNA_H-elongata_contig126615.1978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 9.250e-6
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   46 SRYDNFVFDCDGVLWAGSHAIEGA 117
            S+Y+ FVFDCDGVLW GSHAIEG+
Sbjct:   28 SKYEAFVFDCDGVLWGGSHAIEGS 51
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BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: A1CUY1_NEOFI (4-nitrophenylphosphatase, putative n=6 Tax=Aspergillus subgen. Fumigati TaxID=2720872 RepID=A1CUY1_NEOFI)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   49 RYDNFVFDCDGVLWAGSHAIEGAS 120
            RYD ++FDCDGV+W+G HAIEGAS
Sbjct:   19 RYDTWLFDCDGVIWSGDHAIEGAS 42
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BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: A0A0L0FC26_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FC26_9EUKA)

HSP 1 Score: 44.3 bits (103), Expect = 5.930e-5
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 1 
Query:   52 YDNFVFDCDGVLWAGSHAIEGA 117
            +D FVFDCDGVLW GSH I GA
Sbjct:   16 FDAFVFDCDGVLWKGSHVIPGA 37
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BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: A0A1Y1Z4V9_9FUNG (4-nitrophenylphosphatase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z4V9_9FUNG)

HSP 1 Score: 47.4 bits (111), Expect = 6.020e-5
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 1 
Query:   49 RYDNFVFDCDGVLWAGSHAIEG 114
            RYD F+FDCDGVLW G HA+EG
Sbjct:   16 RYDTFLFDCDGVLWQGKHALEG 37
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BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: A0A397GPW1_9EURO (Uncharacterized protein n=5 Tax=Aspergillus TaxID=5052 RepID=A0A397GPW1_9EURO)

HSP 1 Score: 47.4 bits (111), Expect = 6.120e-5
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:   46 SRYDNFVFDCDGVLWAGSHAIEGAS 120
            SRYD ++FDCDGV+W+G  AIEGAS
Sbjct:   18 SRYDTWLFDCDGVIWSGDDAIEGAS 42
[Close]
BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Match: S8AK95_PENO1 (Uncharacterized protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S8AK95_PENO1)

HSP 1 Score: 47.4 bits (111), Expect = 6.120e-5
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:   46 SRYDNFVFDCDGVLWAGSHAIEGAS 120
            SRYD ++FDCDGV+W+G  AIEGAS
Sbjct:   18 SRYDTWLFDCDGVIWSGDDAIEGAS 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126615.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G934_ECTSI9.250e-679.17Haloacid dehalogenase-like hydrolase family protei... [more]
A1CUY1_NEOFI1.270e-575.004-nitrophenylphosphatase, putative n=6 Tax=Aspergi... [more]
A0A0L0FC26_9EUKA5.930e-577.27Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A1Y1Z4V9_9FUNG6.020e-577.274-nitrophenylphosphatase n=1 Tax=Basidiobolus meri... [more]
A0A397GPW1_9EURO6.120e-572.00Uncharacterized protein n=5 Tax=Aspergillus TaxID=... [more]
S8AK95_PENO16.120e-572.00Uncharacterized protein n=1 Tax=Penicillium oxalic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126615contigH-elongata_contig126615:71..193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929750.1570113-CDS-H-elongata_contig126615:70..1931622929750.1570113-CDS-H-elongata_contig126615:70..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126615 71..193 -
1691679142.9726512-CDS-H-elongata_contig126615:70..1931691679142.9726512-CDS-H-elongata_contig126615:70..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126615 71..193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126615.1978.1prot_H-elongata_contig126615.1978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126615 71..193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126615.1978.1

>prot_H-elongata_contig126615.1978.1 ID=prot_H-elongata_contig126615.1978.1|Name=mRNA_H-elongata_contig126615.1978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MSSIDGTRHHCHHCRSRYDNFVFDCDGVLWAGSHAIEGAS*
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mRNA from alignment at H-elongata_contig126615:71..193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126615.1978.1 ID=mRNA_H-elongata_contig126615.1978.1|Name=mRNA_H-elongata_contig126615.1978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig126615:71..193- (Himanthalia elongata Himel1 dioecious)
ATGTCCTCGATCGACGGCACACGCCACCACTGCCACCACTGCCGCTCCAG
GTACGACAACTTCGTGTTCGACTGTGATGGAGTGCTGTGGGCCGGCAGCC
ACGCCATTGAGGGTGCCAGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig126615:71..193-

>mRNA_H-elongata_contig126615.1978.1 ID=mRNA_H-elongata_contig126615.1978.1|Name=mRNA_H-elongata_contig126615.1978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig126615:71..193- (Himanthalia elongata Himel1 dioecious)
ATGTCCTCGATCGACGGCACACGCCACCACTGCCACCACTGCCGCTCCAG
GTACGACAACTTCGTGTTCGACTGTGATGGAGTGCTGTGGGCCGGCAGCC
ACGCCATTGAGGGTGCCAGTTGAATGTCCTCGATCGACGGCACACGCCAC
CACTGCCACCACTGCCGCTCCAGGTACGACAACTTCGTGTTCGACTGTGA
TGGAGTGCTGTGGGCCGGCAGCCACGCCATTGAGGGTGCCAGTTGA
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