mRNA_H-elongata_contig12614.1949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12614.1949.1
Unique NamemRNA_H-elongata_contig12614.1949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12614.1949.1 vs. uniprot
Match: A0A6H5KZM3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZM3_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 1.060e-93
Identity = 227/499 (45.49%), Postives = 293/499 (58.72%), Query Frame = 1
Query:    1 RREESAARAQRRRDGNRXXXXXXDRRRSAIAEATRAKLEGPSRAEMKA--QARELERRQQFFLFVVAVVGATVRWRNDWKERKLLMAKISETIAAGKETKDSATDKFEASAVCVQRFFRHRKG--GTLSGDHSNKGLRLHPGVNHVRCLKRWIQKLGKRWKCRRRGRAVIIHEFLREAKLTQNIKAIYRFRKRVIRCQVYAKGFLNVTRARLELLDLYFHRCEERLRGRLVERVRQQVKDEAAVDLEIHRQMHHHPV----------VKVDHRRWGEKTAARSGTVTGRSNDDV-KLMDALAKMRLKSALDKLETRFAHPEVKSRLLDGLLTKARVRVEHQVNIRLTNKQRKG--RDRSGDVSRSEKCRRQRREICDGIMLAEAVFTVDDARDLLSKRRRSVKVPGVGRWGDDSSRVT----ATVNIAGNFTGAISSSAGVETTGSGDGKERRSSDKXXXXXXXXAATLTRVKPVLLLRAVTESIMCQLVMAAWEQSST 1434
            RREE+  RAQR+R+ N XXXXXX+RRR A AEATR K EGPS AE++A  +A  LE+RQ++FLF V  + + +RWRNDWKERK  MAK +E +    E K+S  D FEAS   VQRF R R+G  G   G  +  G R     N +RCLK WI +    WK RRR   VII++FL++A+L+QNIKAIYRFR++V+RCQVY KG   VTR RL LL L+F +CE RLRGRL ERVRQQV++EAA DLE+HRQ+                                  TG  +D V +LM+ +A +RLKSA ++LE R A P+VK RLL+GLL K  VR  HQ  ++L++  R G      GD    +   R RR    G+ L EA+FTVDDAR+LL++                   +T    A+ N +G   GA  S+  V   G+G       S              TRV P+LLL++V E++MCQLV+ AWEQSS+
Sbjct:  221 RREEATTRAQRKREANXXXXXXXERRRLATAEATRIKHEGPSLAEVRALEEAALLEKRQRYFLFAVVAIHSAIRWRNDWKERKYKMAKFAEALVGLIEQKESQ-DVFEASVARVQRFVRRRQGAPGVAGGAAATAGDRSGRR-NFIRCLKAWIPRAHGTWKRRRREGGVIIYDFLKDARLSQNIKAIYRFRRKVMRCQVYVKGVSVVTRDRLLLLGLFFSQCEGRLRGRLAERVRQQVQEEAAADLEVHRQLMRPSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGEDDGVSELMETVAALRLKSAQEELEMRSARPDVKRRLLEGLLGK--VRAAHQSRMQLSSGGRGGDXXXXXGDARIGKGPGRNRR----GVFLPEALFTVDDARELLTRSPXXXXXXXXXXXXXXXXGLTNGNQASPNGSGELPGAPYSTVAVSRPGTGGXXXXXVSKSDFRPN-------TRVPPMLLLKSVPEAVMCQLVLTAWEQSSS 704          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12614.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZM3_9PHAE1.060e-9345.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12614contigH-elongata_contig12614:427..3918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002360.1
Exons6
Model size1434
Cds size1434
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12614.1949.1prot_H-elongata_contig12614.1949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12614 427..3918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.2893453-CDS-H-elongata_contig12614:426..5641622929747.2893453-CDS-H-elongata_contig12614:426..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 427..564 +
1691679141.9023428-CDS-H-elongata_contig12614:426..5641691679141.9023428-CDS-H-elongata_contig12614:426..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 427..564 +
1622929747.3079553-CDS-H-elongata_contig12614:1071..12271622929747.3079553-CDS-H-elongata_contig12614:1071..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 1072..1227 +
1691679141.9204175-CDS-H-elongata_contig12614:1071..12271691679141.9204175-CDS-H-elongata_contig12614:1071..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 1072..1227 +
1622929747.324157-CDS-H-elongata_contig12614:1527..18081622929747.324157-CDS-H-elongata_contig12614:1527..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 1528..1808 +
1691679141.9328709-CDS-H-elongata_contig12614:1527..18081691679141.9328709-CDS-H-elongata_contig12614:1527..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 1528..1808 +
1622929747.3389144-CDS-H-elongata_contig12614:2154..25391622929747.3389144-CDS-H-elongata_contig12614:2154..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 2155..2539 +
1691679141.9420252-CDS-H-elongata_contig12614:2154..25391691679141.9420252-CDS-H-elongata_contig12614:2154..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 2155..2539 +
1622929747.3549273-CDS-H-elongata_contig12614:2854..30311622929747.3549273-CDS-H-elongata_contig12614:2854..3031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 2855..3031 +
1691679141.950323-CDS-H-elongata_contig12614:2854..30311691679141.950323-CDS-H-elongata_contig12614:2854..3031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 2855..3031 +
1622929747.3694196-CDS-H-elongata_contig12614:3621..39181622929747.3694196-CDS-H-elongata_contig12614:3621..3918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 3622..3918 +
1691679141.963-CDS-H-elongata_contig12614:3621..39181691679141.963-CDS-H-elongata_contig12614:3621..3918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12614 3622..3918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12614.1949.1

>prot_H-elongata_contig12614.1949.1 ID=prot_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp
RREESAARAQRRRDGNRERRRRMDRRRSAIAEATRAKLEGPSRAEMKAQA
RELERRQQFFLFVVAVVGATVRWRNDWKERKLLMAKISETIAAGKETKDS
ATDKFEASAVCVQRFFRHRKGGTLSGDHSNKGLRLHPGVNHVRCLKRWIQ
KLGKRWKCRRRGRAVIIHEFLREAKLTQNIKAIYRFRKRVIRCQVYAKGF
LNVTRARLELLDLYFHRCEERLRGRLVERVRQQVKDEAAVDLEIHRQMHH
HPVVKVDHRRWGEKTAARSGTVTGRSNDDVKLMDALAKMRLKSALDKLET
RFAHPEVKSRLLDGLLTKARVRVEHQVNIRLTNKQRKGRDRSGDVSRSEK
CRRQRREICDGIMLAEAVFTVDDARDLLSKRRRSVKVPGVGRWGDDSSRV
TATVNIAGNFTGAISSSAGVETTGSGDGKERRSSDKAAAAAAATAATLTR
VKPVLLLRAVTESIMCQLVMAAWEQSST
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mRNA from alignment at H-elongata_contig12614:427..3918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12614.1949.1 ID=mRNA_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3492bp|location=Sequence derived from alignment at H-elongata_contig12614:427..3918+ (Himanthalia elongata Himel1 dioecious)
AGGCGAGAGGAGTCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAG AGAGAGGCGACGACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGA CACGTGCCAAGCTTGAGGGACCCAGCCGGGCGGAGATGGTGACCAATAGA ATTATGAGGAGTCGTGCTGTGCCAACGACACGATCCACAGTAGTAGCGTA CAGAAGTTCATAATCGGCTTCCCTATCCTAGTATGGCTTATTGTGTTATT TTCGCTTGTGATGTGAATTCCCGATGTTGATACGGCAAGACACGACGAAC AGTGGACGCCTTAGTAAGGCGTTTGTTCCTTGTGTCATATACGTGAAAGC TCAGAAGAGGTCGAGTGGGGGCATTCATTACCAGAGCTGAAACGGCAGCA GCAGTGTTTTCCTCTAGACCACTGCTCTTTCCTTTCTTACTTGTGTGCGA TTACGGAGGGTGTTGTACTTTCTTGGGGTCCTTTGCTTGCTCTATTGTCC CTTTCAAAACGTTCCTACGAATCCTCGAATATGACGGTCTCCATTCCATG GCGCCTGAAGTTCGCTTTCAGGATTAGCATTCCTTATCTCTCCATTCATT TCTACGTATATACCCCATTGTGTCCATCGATCACGGTTATCTCAGAAAGC TCAGGCCCGAGAGCTCGAACGACGTCAACAATTTTTCCTGTTTGTCGTTG CCGTTGTGGGTGCAACTGTGAGATGGCGCAACGATTGGAAGGAGCGCAAG TTGTTGATGGCTAAGATCTCTGAAACTATCGCTGCGGGCAAGGAAACCAA GGTTTGAGATTGGCGGTAAAATTGGCGAGTGTAACTCAGGCAATTCACGG GAGAAAATCATAGTATACAAATGATGCACAGGTGTTGCAGCAACAAGGGT AAAAAAATGTAACACTAGGTGTCGATCGCAGCGACGAGGTTGTGCGCCAA GGAACGGATAGACCCGAAGGGGCAGCACTGCGAGGTGCGACGTATCAGAT TATAAAACATCAAACCATTTACGCCCGACATCGATTGCTATTTTCCTTCG CCGCCGTTTGTGTTTCATGATGCCGTCATGACGCCACGACCCTGCGCACA GGATTCTGCGACCGACAAATTCGAGGCGAGCGCAGTGTGCGTGCAACGTT TTTTTCGGCACCGCAAGGGTGGCACGCTGAGCGGCGACCACAGCAACAAG GGACTCAGACTTCATCCTGGCGTCAACCATGTCCGCTGTCTAAAGAGGTG GATACAAAAGTTAGGGAAAAGATGGAAATGTCGAAGGCGTGGGAGGGCGG TTATAATCCACGAGTTTCTCCGAGAGGCAAAGCTTACCCAGAACATCAAG GCGATATACCGTTTCCGCAAGAGGGTTATAAGGTGCGTCACGATATAGTC TACTAGTAATGTCCAGTATCATCTCGGTAATATTATTGCTTTTGGTTACA TATTCTGAGGCTGAAAAGCAACGAATCAAGGGCTTAACTTTGTGGTGTAT GTTTTTCATTTCTACGCCCCCGTTACCTACCGACTTTCTTTCGTGGCAAC GATGCGCGACTCACCTACACTCAACGACAGCACCCTTGTATACCGTATAT AGTTTACCTGCATTTGGCGAGAGGCCTGTGGTGGGCCTTTTTGAATGACA TTACCTTCCCCCGTCTACCCTAGGCTAAACCACGCGAGGACTTCGCCGCG TCATCGAACCTAAAACATGCGAACTCAGGTGTCAGGTCTACGCCAAGGGG TTCTTGAATGTCACTCGTGCTCGACTGGAGCTCCTCGATCTCTACTTCCA CCGCTGCGAGGAACGACTTCGAGGGAGGCTTGTGGAGCGCGTTCGGCAAC AGGTCAAAGACGAGGCGGCCGTCGATCTTGAGATCCACCGGCAGATGCAT CATCATCCGGTCGTAAAGGTCGACCACCGAAGGTGGGGTGAAAAGACGGC AGCGAGGTCAGGGACCGTAACGGGCAGGAGCAACGACGATGTGAAGCTCA TGGATGCCTTGGCGAAGATGAGGCTGAAGTCTGCCCTAGACAAGCTGGAG ACGCGGTTCGCGCACCCCGAGGTCAAGAGCCGCTTGCTGGACGGTCTTCT CACCAAGGCACGTGTACTTTATCTGATCTGGATGCTGTTCTAGAACCCCC TTCGTAATAACACAGCACGTATCGAGGTTGCACCCCCGTCCAGAGGCTAG ACTCTAATACCTTGCGTCCGCGGCTGGCTCATTATTTTTAATTTGTTGAG CGGGAATAATAAAACGAAGCTCGCGTACACAGAGAGCGGTCCGGGAGGAA GATGTTGTTTGCTTTGTGCATGACGAAATAGTTTGGACGTACACTGAAGT CTCGTGATGGCAGAGCCGGTTTAGCAAGCGTCTCAGATGTATTTCTGCTT TATCGGGATCTCTCTTTTTATCTTGAAGGTACGGGTAGAACACCAGGTTA ATATCAGACTCACGAACAAGCAGCGCAAGGGAAGGGATCGCAGCGGCGAC GTCAGTCGCTCAGAGAAATGTCGACGTCAGCGGAGGGAAATTTGCGATGG AATCATGCTGGCGGAAGCTGTCTTCACCGTCGACGATGCGAGGGACTTGC TATCGGTGAGCTATTCGCCGGGCTGCAGCTTCTCGTCACCCCTTCCCCCC ACCACTTACCGCTGGAACGAACCGTAAGGGAAGGTTCACGCTTTCCCGGC GGCATCTCTCTAGTAGCTCTTCAAAAATCCCAGAGAGTTGCTTAGGGGTT AGCCGGCCACCTTCCCTCGACACGATGAACGCCGCACGCAGACCTGGCAA CATCTCGTCGTGGTCTTTCCCAGCTCGCGCGATTAAATAATTGCTTTTAG GAGTTACTTGGGTTAGATTCATACGCGGCCGTTAGAACAGCCTACTTCTA TCGTTGAGTTTTTTTTCGCTGTGCGTAACAGCCCTAACCCTGCCACAAGT GATGACTAACGGCTAACGCGGGGGCGAAACAGTTGCGACGTCATGAACCG AATCCAATCCCATATATCCCTCTTTTTTCCCCTCAGCCCCTACTCTTTAC GCCATCTGCTTTTATGTCTCGCTTGTCCCACCACTTCCCCCCTCGTATAT CATATCGCACGTTCTCACGCCGTGGGGTGCAGCATCTGCCCCAATCGCAT CCCGTTTTCCCAGTCGACGGCATTGCCAACGAAGACGGAAAGAAGAAAAG ACGGCGATCGGTCAAGGTTCCGGGTGTCGGTCGCTGGGGAGACGATTCGT CTCGCGTGACAGCCACAGTCAACATCGCGGGTAATTTTACAGGCGCGATA AGTTCGTCGGCGGGGGTGGAGACTACGGGGTCGGGGGACGGAAAAGAGAG GCGCTCTTCGGACAAGGCCGCCGCTGCCGCTGCCGCTACCGCCGCCACTT TGACGAGGGTGAAGCCAGTGCTGCTCCTGAGGGCGGTTACGGAATCGATC ATGTGTCAGCTCGTTATGGCCGCCTGGGAGCAGAGCTCGACC
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Coding sequence (CDS) from alignment at H-elongata_contig12614:427..3918+

>mRNA_H-elongata_contig12614.1949.1 ID=mRNA_H-elongata_contig12614.1949.1|Name=mRNA_H-elongata_contig12614.1949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig12614:427..3918+ (Himanthalia elongata Himel1 dioecious)
AGGCGAGAGGAGTCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAG
AGAGAGGCGACGACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGA
CACGTGCCAAGCTTGAGGGACCCAGCCGGGCGGAGATGAGGCGAGAGGAG
TCGGCAGCAAGGGCTCAGCGTAGGCGAGATGGAAACAGAGAGAGGCGACG
ACGAATGGACCGGCGACGATCGGCGATCGCTGAGGCGACACGTGCCAAGC
TTGAGGGACCCAGCCGGGCGGAGATGAAAGCTCAGGCCCGAGAGCTCGAA
CGACGTCAACAATTTTTCCTGTTTGTCGTTGCCGTTGTGGGTGCAACTGT
GAGATGGCGCAACGATTGGAAGGAGCGCAAGTTGTTGATGGCTAAGATCT
CTGAAACTATCGCTGCGGGCAAGGAAACCAAGAAAGCTCAGGCCCGAGAG
CTCGAACGACGTCAACAATTTTTCCTGTTTGTCGTTGCCGTTGTGGGTGC
AACTGTGAGATGGCGCAACGATTGGAAGGAGCGCAAGTTGTTGATGGCTA
AGATCTCTGAAACTATCGCTGCGGGCAAGGAAACCAAGGATTCTGCGACC
GACAAATTCGAGGCGAGCGCAGTGTGCGTGCAACGTTTTTTTCGGCACCG
CAAGGGTGGCACGCTGAGCGGCGACCACAGCAACAAGGGACTCAGACTTC
ATCCTGGCGTCAACCATGTCCGCTGTCTAAAGAGGTGGATACAAAAGTTA
GGGAAAAGATGGAAATGTCGAAGGCGTGGGAGGGCGGTTATAATCCACGA
GTTTCTCCGAGAGGCAAAGCTTACCCAGAACATCAAGGCGATATACCGTT
TCCGCAAGAGGGTTATAAGGATTCTGCGACCGACAAATTCGAGGCGAGCG
CAGTGTGCGTGCAACGTTTTTTTCGGCACCGCAAGGGTGGCACGCTGAGC
GGCGACCACAGCAACAAGGGACTCAGACTTCATCCTGGCGTCAACCATGT
CCGCTGTCTAAAGAGGTGGATACAAAAGTTAGGGAAAAGATGGAAATGTC
GAAGGCGTGGGAGGGCGGTTATAATCCACGAGTTTCTCCGAGAGGCAAAG
CTTACCCAGAACATCAAGGCGATATACCGTTTCCGCAAGAGGGTTATAAG
GTGTCAGGTCTACGCCAAGGGGTTCTTGAATGTCACTCGTGCTCGACTGG
AGCTCCTCGATCTCTACTTCCACCGCTGCGAGGAACGACTTCGAGGGAGG
CTTGTGGAGCGCGTTCGGCAACAGGTCAAAGACGAGGCGGCCGTCGATCT
TGAGATCCACCGGCAGATGCATCATCATCCGGTCGTAAAGGTCGACCACC
GAAGGTGGGGTGAAAAGACGGCAGCGAGGTCAGGGACCGTAACGGGCAGG
AGCAACGACGATGTGAAGCTCATGGATGCCTTGGCGAAGATGAGGCTGAA
GTCTGCCCTAGACAAGCTGGAGACGCGGTTCGCGCACCCCGAGGTCAAGA
GCCGCTTGCTGGACGGTCTTCTCACCAAGGCACGTGTGTCAGGTCTACGC
CAAGGGGTTCTTGAATGTCACTCGTGCTCGACTGGAGCTCCTCGATCTCT
ACTTCCACCGCTGCGAGGAACGACTTCGAGGGAGGCTTGTGGAGCGCGTT
CGGCAACAGGTCAAAGACGAGGCGGCCGTCGATCTTGAGATCCACCGGCA
GATGCATCATCATCCGGTCGTAAAGGTCGACCACCGAAGGTGGGGTGAAA
AGACGGCAGCGAGGTCAGGGACCGTAACGGGCAGGAGCAACGACGATGTG
AAGCTCATGGATGCCTTGGCGAAGATGAGGCTGAAGTCTGCCCTAGACAA
GCTGGAGACGCGGTTCGCGCACCCCGAGGTCAAGAGCCGCTTGCTGGACG
GTCTTCTCACCAAGGCACGTGTACGGGTAGAACACCAGGTTAATATCAGA
CTCACGAACAAGCAGCGCAAGGGAAGGGATCGCAGCGGCGACGTCAGTCG
CTCAGAGAAATGTCGACGTCAGCGGAGGGAAATTTGCGATGGAATCATGC
TGGCGGAAGCTGTCTTCACCGTCGACGATGCGAGGGACTTGCTATCGGTA
CGGGTAGAACACCAGGTTAATATCAGACTCACGAACAAGCAGCGCAAGGG
AAGGGATCGCAGCGGCGACGTCAGTCGCTCAGAGAAATGTCGACGTCAGC
GGAGGGAAATTTGCGATGGAATCATGCTGGCGGAAGCTGTCTTCACCGTC
GACGATGCGAGGGACTTGCTATCGAAAAGACGGCGATCGGTCAAGGTTCC
GGGTGTCGGTCGCTGGGGAGACGATTCGTCTCGCGTGACAGCCACAGTCA
ACATCGCGGGTAATTTTACAGGCGCGATAAGTTCGTCGGCGGGGGTGGAG
ACTACGGGGTCGGGGGACGGAAAAGAGAGGCGCTCTTCGGACAAGGCCGC
CGCTGCCGCTGCCGCTACCGCCGCCACTTTGACGAGGGTGAAGCCAGTGC
TGCTCCTGAGGGCGGTTACGGAATCGATCATGTGTCAGCTCGTTATGGCC
GCCTGGGAGCAGAGCTCGACCAAAAGACGGCGATCGGTCAAGGTTCCGGG
TGTCGGTCGCTGGGGAGACGATTCGTCTCGCGTGACAGCCACAGTCAACA
TCGCGGGTAATTTTACAGGCGCGATAAGTTCGTCGGCGGGGGTGGAGACT
ACGGGGTCGGGGGACGGAAAAGAGAGGCGCTCTTCGGACAAGGCCGCCGC
TGCCGCTGCCGCTACCGCCGCCACTTTGACGAGGGTGAAGCCAGTGCTGC
TCCTGAGGGCGGTTACGGAATCGATCATGTGTCAGCTCGTTATGGCCGCC
TGGGAGCAGAGCTCGACC
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