prot_H-elongata_contig126086.1941.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig126086.1941.1
Unique Nameprot_H-elongata_contig126086.1941.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length236
Homology
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BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Match: A0A6H5KAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.850e-59
Identity = 134/235 (57.02%), Postives = 154/235 (65.53%), Query Frame = 0 
Query:    1 ILCWRVGGXXXXXXXXXXXLFGGGGQDEKNFPAESATEQAVIRVAKAKGLSFTTVRVTKF-GDVRGAAASESPLPLITPKNAPRPTGG--SLPDASRSVAANALLRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPESRRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEG---GSGTFKAWSFLREWAQLWTKEGTGLTTRVRL 229
            ++C  VGG XXXXXXXXXX       ++K FPAES  EQAVIRVAKAKG+SFTTVRV+K   + RGA     P+PLI P+N+PR  GG  +LP ASRSVAAN + RASYQ                                        PE+RRNSTFAVSDFP S   WPVP+SGW DEF+KLTGPELLR+ IPA FEG   GSGTF AW+FLREWAQLWT+EGTGLTTRV++
Sbjct:  528 VVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPAESTAEQAVIRVAKAKGVSFTTVRVSKLLAEDRGAI---DPMPLIVPRNSPRADGGRSTLPAASRSVAANTIFRASYQ----------------------------------------PEARRNSTFAVSDFPTS---WPVPSSGWVDEFLKLTGPELLRIPIPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKV 716
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BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Match: D7FK21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK21_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.960e-53
Identity = 129/235 (54.89%), Postives = 152/235 (64.68%), Query Frame = 0 
Query:    1 ILCWRVGGXXXXXXXXXXXLFGGGGQDEKNFPAESATEQAVIRVAKAKGLSFTTVRVTKF-GDVRGAAASESPLPLITPKNAPRPTGGSL-PDASRSVAANAL-LRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPESRRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEG---GSGTFKAWSFLREWAQLWTKEGTGLTTRVRL 229
            ++C  VGG XXXXXXXXXX       ++K FP ES  EQ VI VAKAKG SFTTVRV+K  G  RGA     P+PLI P+N PR  G  + P AS +V      L+    V +S  V   V  T+++         K N         KKPE+RRNSTFAVSDFP S   WPVP+SGW DEF+KLTGPELLR+ +PA FEG   GSGTF AW+FLREWAQLWT+EGTGLTTRV++
Sbjct:  280 VVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVIPVAKAKGGSFTTVRVSKLLGQDRGAI---DPMPLIVPRNIPRADGRQVYPPASVAVRGGKHHLQGLLPVFSSSLVSAPVEKTWAKTRTGMYSRGKWNFFE------KKPEARRNSTFAVSDFPTS---WPVPSSGWVDEFLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKV 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126086.1941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAR2_9PHAE1.850e-5957.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK21_ECTSI6.960e-5354.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126086contigH-elongata_contig126086:3..1458 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126086.1941.1mRNA_H-elongata_contig126086.1941.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig126086 3..1458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig126086.1941.1 ID=prot_H-elongata_contig126086.1941.1|Name=mRNA_H-elongata_contig126086.1941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
ILCWRVGGGGGGGGGVGVGLFGGGGQDEKNFPAESATEQAVIRVAKAKGL
SFTTVRVTKFGDVRGAAASESPLPLITPKNAPRPTGGSLPDASRSVAANA
LLRASYQVLASETVFPLVTITFSRLLQPPLPFTKNNVLPPLPPTPKKPES
RRNSTFAVSDFPVSSPSWPVPASGWTDEFVKLTGPELLRVAIPAEFEGGS
GTFKAWSFLREWAQLWTKEGTGLTTRVRLPLVVCF*
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