mRNA_H-elongata_contig124849.1870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124849.1870.1
Unique NamemRNA_H-elongata_contig124849.1870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.560e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            V  TD GGEF+G+F     R  I  E TPP+TP+YNGVAERAL LL + A+A
Sbjct:   56 VARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALA 107          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.700e-10
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            V  TD GGEF+G+F     R  I  E TPP+TP+YNGVAERAL LL + A+A
Sbjct:  260 VARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.040e-10
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            C++Y        +  TD GGEF+G+F     R  I  E TPP TP+YNGVAERAL L+ + A+A
Sbjct:  460 CKVY--------IARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.160e-9
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   40 VRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            +  TD GGEF+G+F     R  I  E TPP TP+YNGVAERAL L+ + A+A
Sbjct:   87 IARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.990e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   34 DQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            D +   D GGEF+G+F     R  I  E TPP TP+YNGVAERAL L+ + A+A
Sbjct:  764 DFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 817          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.700e-9
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            C +Y        +  TD+GGEF+G+F     R  I  E TPP TP+YN VAERAL L+ + A+A
Sbjct:  277 CEVY--------ITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALA 332          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 CRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            C++Y        +  TD GGEF+G+F        I  E TPP TP+YNGVAERAL L+ + A+A
Sbjct:   83 CKVY--------IVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALA 138          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.490e-8
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   13 YHPTGAVDQVRT--TDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            Y   GA  +V    TD GGEF+G+F     R  I  E TPP T +YNGVAERAL L+ + A+A
Sbjct:  249 YRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAALA 311          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.820e-8
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   49 TDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            TD GGEF+G+F     R  I  E TPP TP+YN VAERAL L+ + A+A
Sbjct:  260 TDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAALA 308          
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.800e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   40 VRTTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALRLLREKAIA 195
            V  +DNGGEF EGEF R   +  I  E TP  +P+YNGVAERAL L+++ A+A
Sbjct:   40 VVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124849.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKB4_9PHAE4.560e-1057.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE4.700e-1057.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE9.040e-1046.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE3.160e-953.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE5.990e-951.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGJ8_9PHAE7.700e-945.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2T3_9PHAE1.090e-845.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE1.490e-849.21Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L1A7_9PHAE2.820e-855.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUA6_9PHAE4.800e-854.72Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124849contigH-elongata_contig124849:1394..1591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.1499374-CDS-H-elongata_contig124849:1393..15911622929737.1499374-CDS-H-elongata_contig124849:1393..1591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124849 1394..1591 +
1691679138.4117236-CDS-H-elongata_contig124849:1393..15911691679138.4117236-CDS-H-elongata_contig124849:1393..1591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124849 1394..1591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124849.1870.1prot_H-elongata_contig124849.1870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124849 1394..1591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124849.1870.1

>prot_H-elongata_contig124849.1870.1 ID=prot_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
DCRLYHPTGAVDQVRTTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNG
VAERALRLLREKAIAL
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mRNA from alignment at H-elongata_contig124849:1394..1591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124849.1870.1 ID=mRNA_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig124849:1394..1591+ (Himanthalia elongata Himel1 dioecious)
GATTGCAGATTATATCACCCCACAGGAGCTGTCGATCAAGTACGTACGAC CGATAATGGTGGCGAGTTCGAGGGGGAATTTCAGCGCGAACTAGATCGGC GCAGTATCACGCACGAGCATACCCCGCCAGACACGCCGCAGTACAACGGG GTGGCCGAACGCGCGCTTAGACTTTTACGAGAAAAGGCTATCGCCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig124849:1394..1591+

>mRNA_H-elongata_contig124849.1870.1 ID=mRNA_H-elongata_contig124849.1870.1|Name=mRNA_H-elongata_contig124849.1870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig124849:1394..1591+ (Himanthalia elongata Himel1 dioecious)
GATTGCAGATTATATCACCCCACAGGAGCTGTCGATCAAGTACGTACGAC
CGATAATGGTGGCGAGTTCGAGGGGGAATTTCAGCGCGAACTAGATCGGC
GCAGTATCACGCACGAGCATACCCCGCCAGACACGCCGCAGTACAACGGG
GTGGCCGAACGCGCGCTTAGACTTTTACGAGAAAAGGCTATCGCCCTGGA
TTGCAGATTATATCACCCCACAGGAGCTGTCGATCAAGTACGTACGACCG
ATAATGGTGGCGAGTTCGAGGGGGAATTTCAGCGCGAACTAGATCGGCGC
AGTATCACGCACGAGCATACCCCGCCAGACACGCCGCAGTACAACGGGGT
GGCCGAACGCGCGCTTAGACTTTTACGAGAAAAGGCTATCGCCCTG
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