mRNA_H-elongata_contig1247.1866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1247.1866.1
Unique NamemRNA_H-elongata_contig1247.1866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A316YSD0_9BASI (Serine/threonine-protein kinase TOR n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YSD0_9BASI)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-10
Identity = 54/190 (28.42%), Postives = 96/190 (50.53%), Query Frame = 3 
Query:   84 LLSELVTAIGREDMAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCIQ-------VARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRES--LAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLV 626
             L +++ A  R     T G   F ++Q+ +LI      +    +  +  ++H+ W  N    +        VA+AL G      F+  VP LLP +L TLE E        T +R+   L ++        +++++L L+LP+++R+ ER+D  + +R  A+V + QLTA  ++  D ASRV+H L+R++
Sbjct:  897 FLPQIIPAFLRVIRTCTTGLSEFYYQQLAILISIIKQHV-RNYLRDIFDLVHDMWNPNSNVQLTIVTLVEAVAKALEGE-----FKTFVPILLPNMLQTLEGE-------VTMKRQPTILRILHAFCVFGGAIDEYLHLVLPVIVRLFERKDASVTLRKQAIVAVGQLTAKVNFC-DHASRVIHPLVRVL 1072
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A6H5K683_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K683_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-8
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:  708 SSALGSSTSGDVEGARGGGARISVGLGSPRELARIGVLGLCCIVCRLKMRYVPFVTPAH-HQASL 899
            SSALGS   G   G    G   S  +GSP+ELAR+GV+GL C+VCRLKMRY+PFV PAH H A+L
Sbjct:  340 SSALGS---GSPPGEDAEGGNFSAVVGSPKELARMGVVGLSCMVCRLKMRYIPFVAPAHDHVAAL 401
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: D7FYJ6_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.210e-8
Identity = 48/142 (33.80%), Postives = 64/142 (45.07%), Query Frame = 3 
Query:  123 MAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCIQVARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVV 548
            MAV  GFRTFLFRQV VLI+AAGPRLP  +VS+L+Q++H+                                                                    DS+E +LQLLLP+LLR++ERRD+G+ +R + L V
Sbjct:    1 MAVAGGFRTFLFRQVIVLIYAAGPRLPPWAVSRLVQIVHQ--------------------------------------------------------------------DSLEGYLQLLLPVLLRMIERRDVGLAMRHITLAV 74
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A4T0NMY1_9BASI (DNA-directed DNA polymerase n=4 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4T0NMY1_9BASI)

HSP 1 Score: 60.1 bits (144), Expect = 3.140e-6
Identity = 46/191 (24.08%), Postives = 96/191 (50.26%), Query Frame = 3 
Query:   75 LPQLLSELVTAIGREDMAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCIQV-------ARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLV 626
            LPQ++   +  I     +     + F F+Q+ +L+      +    ++ +L+++ E W  N    I +       A+AL G      FR+ +P LLP +L T + E    +  T  R     ++R  +    ++E++L L++P +++ +ER +  + +R  A++ I QL+   ++  D ASR++H ++R++
Sbjct: 1109 LPQIIPAFMGVI----RSCAPSLQEFYFQQLAILVSIVKHHI-RNFLTDILEMIREFWNPNSTLQITIISLTEILAKALEGE-----FRVHLPVLLPPMLQTFDYEFSDKRQPTLIR-----ILRAFSVFGSNIEEYLHLVVPAIVKTIERPEASVQLRKSAIITIGQLSRQVNFC-DHASRIIHPIVRVL 1283
[Close]
BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A0M8MVC9_9BASI (Serine/threonine-protein kinase TOR n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MVC9_9BASI)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-5
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 3 
Query:   75 LPQLLSELVTAIGREDMAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCI-------QVARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLV 626
            LPQ++   +  I         G   F ++Q+ +LI      +    +  +  ++   W  N    +        VARAL G      F+  +P LLP +L TLE E    +  T      L +++       ++++H+ L+LP+L+ + ER D  I +R  A+V + QL+   D L D ASR++H LIR++
Sbjct:  874 LPQIVPAFLHVI---RTCAGGGLSEFYYQQLAILISIIKQHV-RNYLHDIFALVQSDWNPNSSIQLTIVSLMESVARALEGE-----FKAYLPLLLPNLLQTLEGEITPKRLPTL-----LRMLQAFYVFGANLDEHMHLVLPVLVGLFERADAPIPLRRAAIVAVGQLSRKVD-LADHASRIIHPLIRVL 1049
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: R9ADP9_WALI9 (Serine/threonine-protein kinase TOR n=6 Tax=Wallemia TaxID=148959 RepID=R9ADP9_WALI9)

HSP 1 Score: 57.8 bits (138), Expect = 1.690e-5
Identity = 48/191 (25.13%), Postives = 95/191 (49.74%), Query Frame = 3 
Query:   75 LPQLLSELVTAIGREDMAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCIQV-------ARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLV 626
            LPQ++   +  I     +     + F F+Q+ +L+      +    ++ +L+++ E W  N    I +       A+AL G      FR+ +P LLP +L T + E    +  T  R     ++R  +    +VE++L L++P +++ +ER +  + +R  A++ I QL+   ++  D ASR++H L R++
Sbjct:  847 LPQIVPAFMGVI----RSCAPSLQEFYFQQLAILVSIVKHHI-RNFLTDILELIREFWNPNSTLQITIISLIEILAKALEGE-----FRVHLPVLLPPMLQTFDFELADKRQPTLIR-----ILRAFSVFGSNVEEYLHLVVPAIVKTIERPESTVQLRKAAIITIGQLSRQVNFC-DHASRIIHPLARVL 1021
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A6P8YVD7_THRPL (Serine/threonine-protein kinase TOR n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YVD7_THRPL)

HSP 1 Score: 57.0 bits (136), Expect = 3.000e-5
Identity = 48/167 (28.74%), Postives = 85/167 (50.90%), Query Frame = 3 
Query:  141 FRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEAN---QGQCIQVARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLVGT 632
            F+ FLF+Q+ VLI      +    +  +  ++ E W  N   Q   I +   +  ALGA  F++ +P L+P ++  L    D+ +  T   +  +A+ +      +S++++L L+LP ++R+ +  D  I V   A+  I  L    D+  DSASR+VH L+R + T
Sbjct:  973 FKEFLFQQLAVLIAIVKQHI-RNYLDDIFVLIREFWTTNSPIQATLILLVEHIAVALGAE-FKVYIPQLMPQIMRVLSH--DNSKDRTVTNKLLVALQKF----GNSLDEYLHLVLPPMVRLFDATDCPIPVCKAAMESIEHLAESLDFT-DSASRIVHPLVRTLDT 1130
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BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Match: A0A1Y2F9P3_PROLT (Non-specific serine/threonine protein kinase n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2F9P3_PROLT)

HSP 1 Score: 55.5 bits (132), Expect = 9.350e-5
Identity = 48/190 (25.26%), Postives = 93/190 (48.95%), Query Frame = 3 
Query:   84 LLSELVTAIGREDMAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCI-------QVARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAVMRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHGDYLLDSASRVVHTLIRLVGT 632
             LS+++          +     F F+Q+ +LI      +    +  + Q++ + W       +        +ARAL G      F++ +P LLPL+L   +++ +S Q  TT +     V+        +VE+++ L+LP+++R LER D+ I +R  ++  I QL+   ++  D +SR++H L R++ T
Sbjct:  847 FLSQIIPGFILVMRTSSPNILEFYFQQLGILISIVKQHI-RNFLPDIFQLIRDFWNPTSNLQLTILALVESIARALEGE-----FKVFLPSLLPLMLQIFDAD-NSPQRITTQK-----VLHAFIVFGANVEEYMHLILPVIVRGLERTDVPISLRKSSIHAIAQLSRKVNFS-DLSSRIIHPLARVLAT 1023
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1247.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A316YSD0_9BASI1.190e-1028.42Serine/threonine-protein kinase TOR n=1 Tax=Acarom... [more]
A0A6H5K683_9PHAE1.060e-860.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYJ6_ECTSI2.210e-833.80Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4T0NMY1_9BASI3.140e-624.08DNA-directed DNA polymerase n=4 Tax=Wallemia melli... [more]
A0A0M8MVC9_9BASI1.270e-527.75Serine/threonine-protein kinase TOR n=1 Tax=Malass... [more]
R9ADP9_WALI91.690e-525.13Serine/threonine-protein kinase TOR n=6 Tax=Wallem... [more]
A0A6P8YVD7_THRPL3.000e-528.74Serine/threonine-protein kinase TOR n=1 Tax=Thrips... [more]
A0A1Y2F9P3_PROLT9.350e-525.26Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1247contigH-elongata_contig1247:8749..14847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog42068.L0PEQ1
Preferred nameTOR1
KEGG koko:K07203
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
GOsGO:0000003,GO:0000139,GO:0000228,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000785,GO:0000790,GO:0001300,GO:0001558,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006351,GO:0006360,GO:0006412,GO:0006413,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0006995,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007346,GO:0007568,GO:0007569,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009267,GO:0009303,GO:0009408,GO:0009605,GO:0009628,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010389,GO:0010467,GO:0010506,GO:0010507,GO:0010514,GO:0010515,GO:0010556,GO:0010564,GO:0010604,GO:0010646,GO:0010647,GO:0010948,GO:0010971,GO:0010972,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018130,GO:0018193,GO:0018209,GO:0019216,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019897,GO:0019898,GO:0022402,GO:0022414,GO:0022613,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030037,GO:0030100,GO:0030162,GO:0030950,GO:0030952,GO:0031090,GO:0031135,GO:0031136,GO:0031137,GO:0031138,GO:0031139,GO:0031140,GO:0031142,GO:0031234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031331,GO:0031410,GO:0031505,GO:0031532,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032092,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032502,GO:0032774,GO:0032879,GO:0032991,GO:0033554,GO:0034064,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035023,GO:0035025,GO:0035556,GO:0036211,GO:0038201,GO:0038202,GO:0038203,GO:0040008,GO:0042149,GO:0042176,GO:0042221,GO:0042254,GO:0042594,GO:0042790,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043562,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043902,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044454,GO:0044459,GO:0044464,GO:0045229,GO:0045732,GO:0045786,GO:0045787,GO:0045807,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046578,GO:0046579,GO:0046890,GO:0046999,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051056,GO:0051057,GO:0051098,GO:0051099,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060627,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0071852,GO:0071944,GO:0080090,GO:0090068,GO:0090153,GO:0090304,GO:0090527,GO:0097435,GO:0097659,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098781,GO:0098791,GO:0098805,GO:0098852,GO:0104004,GO:0140096,GO:1900087,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901800,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902531,GO:1902533,GO:1902749,GO:1902750,GO:1902751,GO:1902806,GO:1902808,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904424,GO:1904426,GO:1904475,GO:1904477,GO:1905038,GO:1905097,GO:1905099,GO:1905356,GO:2000045,GO:2000058,GO:2000060,GO:2000241,GO:2000242,GO:2000243,GO:2001106,GO:2001108
EggNOG free text desc.Phosphatidylinositol kinase
EggNOG OGs38D67@33154,3MDWN@451866,3NU9I@4751,3QJMI@4890,COG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.L
BiGG ReactioniMM904.YKL203C,iND750.YKL203C
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categorymitochondrion
Exons6
Model size960
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1247.1866.1prot_H-elongata_contig1247.1866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1247 8871..14846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.598873-UTR-H-elongata_contig1247:8748..88701622929736.598873-UTR-H-elongata_contig1247:8748..8870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1247 8749..8870 +
1691679138.1863432-UTR-H-elongata_contig1247:8748..88701691679138.1863432-UTR-H-elongata_contig1247:8748..8870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1247 8749..8870 +
1622929736.6910741-UTR-H-elongata_contig1247:14846..148471622929736.6910741-UTR-H-elongata_contig1247:14846..14847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1247 14847..14847 +
1691679138.2547076-UTR-H-elongata_contig1247:14846..148471691679138.2547076-UTR-H-elongata_contig1247:14846..14847Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1247 14847..14847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.6142082-CDS-H-elongata_contig1247:8870..89121622929736.6142082-CDS-H-elongata_contig1247:8870..8912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 8871..8912 +
1691679138.2014453-CDS-H-elongata_contig1247:8870..89121691679138.2014453-CDS-H-elongata_contig1247:8870..8912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 8871..8912 +
1622929736.6244087-CDS-H-elongata_contig1247:9722..98001622929736.6244087-CDS-H-elongata_contig1247:9722..9800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 9723..9800 +
1691679138.2126021-CDS-H-elongata_contig1247:9722..98001691679138.2126021-CDS-H-elongata_contig1247:9722..9800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 9723..9800 +
1622929736.6375496-CDS-H-elongata_contig1247:10686..108901622929736.6375496-CDS-H-elongata_contig1247:10686..10890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 10687..10890 +
1691679138.220412-CDS-H-elongata_contig1247:10686..108901691679138.220412-CDS-H-elongata_contig1247:10686..10890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 10687..10890 +
1622929736.6490064-CDS-H-elongata_contig1247:11766..119181622929736.6490064-CDS-H-elongata_contig1247:11766..11918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 11767..11918 +
1691679138.229048-CDS-H-elongata_contig1247:11766..119181691679138.229048-CDS-H-elongata_contig1247:11766..11918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 11767..11918 +
1622929736.6619759-CDS-H-elongata_contig1247:12732..128401622929736.6619759-CDS-H-elongata_contig1247:12732..12840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 12733..12840 +
1691679138.2378082-CDS-H-elongata_contig1247:12732..128401691679138.2378082-CDS-H-elongata_contig1247:12732..12840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 12733..12840 +
1622929736.6765223-CDS-H-elongata_contig1247:14593..148461622929736.6765223-CDS-H-elongata_contig1247:14593..14846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 14594..14846 +
1691679138.2461963-CDS-H-elongata_contig1247:14593..148461691679138.2461963-CDS-H-elongata_contig1247:14593..14846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1247 14594..14846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1247.1866.1

>prot_H-elongata_contig1247.1866.1 ID=prot_H-elongata_contig1247.1866.1|Name=mRNA_H-elongata_contig1247.1866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=279bp
MAVTNGFRTFLFRQVTVLIFAAGPRLPTRSVSQLLQVLHEHWEANQGQCI
QVARALHGALGARGFRLLVPDLLPLVLGTLESEGDSVQGGTTGRRESLAV
MRLLATVKDSVEDHLQLLLPLLLRILERRDLGIDVRIVALVVILQLTAHG
DYLLDSASRVVHTLIRLVGTEGRTSLATGSAPSATATVAAARSAVSSALG
SSTSGDVEGARGGGARISVGLGSPRELARIGVLGLCCIVCRLKMRYVPFV
TPAHHQASLTVRLRDYISDPCLAEGRYR*
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mRNA from alignment at H-elongata_contig1247:8749..14847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1247.1866.1 ID=mRNA_H-elongata_contig1247.1866.1|Name=mRNA_H-elongata_contig1247.1866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6099bp|location=Sequence derived from alignment at H-elongata_contig1247:8749..14847+ (Himanthalia elongata Himel1 dioecious)
ACGGTGTCGTGGGCGCGGCGTCTCAGAAGGGGCCCTGGCCCGGGTGGGCG
GGATGGGGGGGCGCGCCGTCTCCCCTGCCGCAGCTGCTCTCGGAGCTGGT
GACGGCCATCGGGAGGGAGGACATGGCGGTCACGAACGGCTTTCGAACGT
TTCTGTTCCGCCAGGTGTGATGTGTTTGGGGGATGGCACCGTGCGCGAGA
TTGGGGGTGATCTAGGCAGTGACGTTGCACGGTACGCAGTGCACGAGCGG
GTGTTGCATGGACGGACTGTGTGTATAACCAAGAGGGATTTTTTTGTTAT
ATTTTGAGAAGAAATGGGGGGAGGGGGGGGGGGGGGGGGTCAATAAATTT
CTATTAATAGTTACATTCCAGGTAATATATATTTCGGTCTCTGATCGTAT
TTAATTAGAATGTATCGTTATATATAGTACATATCTTAAATAGATAAGAT
TTAATACCTCTCATGGTGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAA
TGAGTTCATACCTTATTTTTCATAATAGTATACCGGATTAATTTACCTGG
TAATTCATATTTAGAGTAATTCCGGGCGCGATAAATGAGATATAGGAGAT
GAAACCCGCAACACAAGTTAATAAAATGTTGCACTTTCCGTCTCCCGTCC
CCGTTTTCTGTTTCAAGCGTAAAAGAGAGAATATAAATAATCAAAGAGGC
GTTTATTTTTCGCATAGTGCCCTTGTTCTGGTGGCCACCAAATCGAATCC
TACCGACGGTCTATCTAGCCTTTCTTTACGCTTTTCTTTTTTCTTTTCTT
TGAGGGGGGCGGGGCGGGGGGGGGCGTACGCACACACGCCGCACACTCCC
GCCCCTGGTGCTGCGTTCCACTTAGTTAACGCGTGTTCTCCCGATGGTCC
CACGTGCGTGTGTCTTGACTTGTGTGGATGGGGATTCGGTAATCCGGGGC
GTGGGGTGGGGTGGGGGGCAAAAGGTGACGGTTCTGATTTTTGCGGCTGG
ACCTCGACTACCCACCCGATCAGTGTCGCAGCTGCTGCAAGTCTTACACG
AGGTGAGGATAGAGATTGAGATGATTTTTCTTTTGGGGGGGGGACTCGTC
GGATATTGGTAGCAAGCCATCATCTTTACCGAGAAAGCAATATATTTAGG
AAACCCTACCGAAAACTCCCCCCCCTCCCCTCCCCTCTAGAAAAGTATTA
TTAGATATTCTTGTGATGCAGTCTAAATATATACCAGGTATATATATATA
TATATATATATCGACATAAGTCAGCATGAAATCAAATGATCCAAGGGAAA
TTCTGAGACACAAGACATTGAACTAATGCCATCTCTCTCTAGTAGGTGTG
GGAAAATAGAGGCGTACAATAATTAGTCCATGGGGTTACCTGAATAGGCT
TCACCCGTTACTCGAACTACCTTGAGGACTGCTGGCTGACTCTCGGTGGT
AAACGCCATCGGTACGCAATTGCGTGGCCTGATGAAATCGGGACTGACCC
GATGGCGGTTGACGGTAGAGATGGACACCGAACGGGCTGACGCGGGACGG
GAGTGCTGAACCCGTCTCACGAGACCAAATTTTCAGGCGCGAACGGGGAC
GGGGAAATTTATTTTCCCTGTTCAGCTGACCACGAGTAGAAGGCAACCAA
ATCCGGTTGATTCTTCTGCTAAATGTGTGACCAACAACAAACAGCATTCT
CGGGCGTTTTATTATTCTGATTATTATTACTTTGTTTTACCTAATAATTA
AAAGATTGGCATGTAAGAAGCGGGCGCCTTCAAGCCGCATGGGCCTCGGG
GGGGGGGGGCATCTCTGAATCTCAAACATAACTCGGAAGGGTGGGGAATG
ACGGGGTGAAGGAGATAATACAACTCATCTCCTTTCGTGCGGCCGTCTCT
CTTTCCTCTCGTTGGGGCCCTGGTTTGGCATTAAATAGCACTGGGAAGCG
AACCAGGGGCAGTGTATCCAGGTCGCCCGGGCCCTGCACGGGGCGCTCGG
GGCCCGGGGATTCCGGCTTCTTGTGCCCGACTTGCTTCCGCTGGTGCTAG
GAACTCTTGAGTCTGAGGGGGATAGCGTGCAAGGGGGGACGACAGGGAGG
CGTGAGAGCTTGGCGGTCATGCGGCTCCTGGCGACCGTGAAGGTATTTTT
GAGGGGGCGAGAGGGAGAATGGATTATGATAGTGGCAGTGGTGGGGCTTG
CCCTCCCCCCCACTTTTCTACATCGTGCCGTAAAGCGCTGGAAGAACGCC
CCCCCCATCTTTATATTTTTGCACACATGTATAGATATCCCTCTTGTGCC
GTGCCGTAAGGCGCTGGACGAACAACCCCCCTCTCTATTATTAGACACAT
GCATATATATCCCAATAGTCTAATACTTACAGCGTGAAAATGTTGAGTAC
CCCCCCCCGCCACCCCCTTCATGAGAACGCCCCCCCCCCCTCTAGACATG
AACACAGACAAATACACGCACGCACACGCTGTTATCTTGATTGTAGAGAC
GGGATGACTTTGAAAAAACACACGTGGGACCCTTCTTGGCGAAATATTTC
CAGCACCGTGGGTTAATTTTTATAATTTTTGGAATGGAGGGGTGGTCTCT
TTTTGGCACTTTTATTGTCTAATGTAATTATAATCGGCGTTTTCTCCACT
TTGTTTATCTTATCTGTTTTTTTCGATACACAATGCTCAACAAAACTCAA
AAACAAAATTGTTGAGGGTTTTGTGCAAAATTGTATTCAAATCTAAAAAC
AAAGTTGTCTTTTTCTATACAAAATTATATACAAAACTCAAAATAAAGTC
CTCGAAGAAGAGTTTAAACAAAAAAAAGGGCGCGATAACACACTTCTCGA
CGGCAGCGACCACGCGTAACTCCTAAGGGAAGATATATAATAATATTGTT
TTTGAGAAGCAAGCCGTCAGATTTCCCTGTGAGGGGGGGAGCAAAGGAAA
GAATAGCTCCAGTTGGTCGCTTGGCTTGGTCGTCGACCGGCCGCTTCCGT
CGTTTTCGGGGCGAGCAGGACAGCGTCGAGGACCACTTACAGCTCCTCCT
GCCCTTGTTGCTGAGGATACTCGAGAGGAGAGATCTCGGGATCGACGTCC
GCATCGTCGCCTTGGTCGTGATCCTTCAGCTGACGGCCCACGGCGATTAT
CTCCTCGACAGTGCCTCGAGGTTCGGGGCGGGAGCCGGAGCTTGGTTTCG
GGGGCGGGGGGGGTGGGGCTGATGGAAATCTCATGCATGTTTTAGGGAGT
ATGGCGGGGAAGGGCACGTTATTCTATTCGTTTTCGTTCACGAGGTTGAT
GTGAAACCGTTGGAAACCTGCATGCATTTTTTCCAGAAGGGGGGGGGGGT
TAGAAGCGAAGAAGGTTATCGCCCGAGTGGTGGAAAACCGCGTATACTAG
GCACTCTTCAATTGCCCGAGGTTCGAAATCCTTACATATATTTATACATG
TATAGATGGACGCCGTCGCGGAAAATGAGAGGATCGAGAGGATCCCGGCA
GTACGCGCCAGATTCAGCCTGGGTTGAGAGAATGAGCAGGCTGACGCGGG
ACGGGACTGCCGAACCCGTCTCGCGAGACAAAACTTTCAGGCGCGAGTGG
GGACAGGGGAAGATTCATTTTCTATATTCGGCTAACCACGAGCAGGAGGC
AACCAAAAATCCGGTTGATCCTTACATATTGATGTGTTTAATCGTGTACT
CGTCATCACTCGTTCGGTATCCTCTTTTAAAGCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCT
CTCTCCCCCTCCCCCCTTTTCCTNNNNNNNNNNCATATTGTTGGTTTTGA
ACGTGTACCCGCCACCACTCGTTCGGGACCCTCTTTTAAAGCCCCCCCCC
CCCACCCCCCTACCTTCCCCCTCTTCTCTTTTTCTCTCCGTTTTGGGGAT
TTCGCCTTCCGCGCCGTGGTTATTTGTCCGGCAGGGTCGTGCACACATTG
ATCCGCCTCGTGGGCACGGAGGGCAGGACGAGTTTGGCGACCGGCTCCGC
TCCCTCGGCGACCGCGACCGTAGCTGCCGCTCGCAGTGCAGTGTGAGCGT
AGACGCCGTCGTCTCTCTCTTTTTTTTTCTTTTTTTTTTTCTTTTCCTTT
CCCCTCCACACACACACCACGTTCTTATCCCTTCGGTTATGACGAATATT
GCTTGGGTGGGGGGGGGGATCGGGCGTTCGATGGAGGCATAGTGGAAGTG
GGAGAACGGGGGTTGGGTTATCCCCCCACCTCGATTTTTCCGCGTCTCGT
GACCTTCCAGTTTGTATTTTTATCCAAGTAGGAAAACCAAGAGTAGCACC
CTCCTTCCGCAGAAAAGGTGGCTCTGCTGCGCCGTGTATTATTTCACCCT
GCTGCCCCAGGCCCGAGTCCTGACTCGTGATAATATACTTACGATCCGTT
AAAAAATAAAATCGGTCGTGTTTTCCATCGGGTTCCGTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTT
TTTNNNNNNNNNNCCCCCCACCCCCGCCCCCGTAGTCGGGATTTTTTTCT
TTCGCTCTTTTAAAAAATCACCCCGGTCGTCTTTCCCCTGGGTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTGAGTGTTCTTTTTTTAGGATCCCGTT
TTATTGTTGTTTTTCTTTTTCGTATTCCGTTTTTTTTGCTAAATAGTCGT
TTTGTCTTCTTTTTCGGATTCCATTTATTGTTGTTGTATTTTTCCCGAGC
TTTGCAGGCTGTATGCCGCCAAGTCGACCATTTATATGCAGTAGTTGTAG
TAGTAGTAGCACTCGTGAGCGTATCGCCCAAGTCACCCCGCTGCTGCCAT
ACAGAAGTGGCAAGCAGTACCGGTCTCTATCTCTGGCACGAGCCGCTGGA
CAGAGGTAGCCCGTCCCTTATTGTCTTTCCCTCCAAATGTCCATATTTAT
CCGTCTATGTTGTCGACATTTCTCTCTTTTTTTTTTTTTTAGGATTTATT
CCAACCTTCCGAACATCCATATCTTCTTAGCACCGTAAAACATGACGAAA
CATATTTTAACCTTGCAGGCGTTTACCGTATTCCTTCGTATCTCTTAAAA
TCCTAGTATATTTGTATTATGATTTTTAGTATGATTAATGTTTTCAAATC
AAACCCTCCGAACATCCACGCCTTCTTAGCTCAATGAAAGGTGCAGTCCA
GGTGACCAACTATCGTCAGGTTCGAATGTGTACATTACCATTAATATTTA
CTCATGAGCACAAAATTACCACGTGTCACCATGTGGGGACGCCAAACCGA
AACATGTGGAGTTGGCGTTATAGAGAAGTGATGAGGGGTACATCGAGAGA
TTATGTCTTAGCTCTTCATTTTATTTATTTTTTCTCTATCATAGTACCTA
TCCACCTACCCCTATCTAACGTTTTGTTGAAAAAAAACATGAACTCATTC
AAACCCACCCAACATCCACATCTTCATAGCACCTCTATCTTTATTTAAAA
AAACAAATGATTTAATGTACTGATGACGTCAACCACGATAATAGCGGGAC
TGTCAATTGATAGGCCAGGACTAGACGCGAAGTGCGTACGTAAGTTGAAT
CCAATTAAAATGTGTGACCAACAACATTTACTGAATACAATATGCATTAT
TTATATTGGTTAATGTAGAGAAGATCTGCATTATTTATATTATCCCTTTC
GTCTATCCCCCCCCCCCCCGTTCATCCCTCCACATCTCCTTGAAGGTCAT
CCGCCCTCGGCTCCAGCACCAGCGGAGACGTGGAAGGCGCTCGAGGAGGC
GGCGCCAGGATAAGCGTTGGCCTGGGGTCACCGAGAGAGCTGGCCAGGAT
AGGGGTGCTCGGCCTCTGCTGCATCGTCTGCCGCCTCAAGATGCGGTATG
TCCCTTTCGTTACACCCGCCCACCACCAGGCAAGTCTGACAGTACGCTTG
AGAGATTACATCTCTGACCCATGTTTGGCGGAGGGGAGGTATAGGTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig1247:8749..14847+

>mRNA_H-elongata_contig1247.1866.1 ID=mRNA_H-elongata_contig1247.1866.1|Name=mRNA_H-elongata_contig1247.1866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at H-elongata_contig1247:8749..14847+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTCACGAACGGCTTTCGAACGTTTCTGTTCCGCCAGATGGCGGT
CACGAACGGCTTTCGAACGTTTCTGTTCCGCCAGGTGACGGTTCTGATTT
TTGCGGCTGGACCTCGACTACCCACCCGATCAGTGTCGCAGCTGCTGCAA
GTCTTACACGAGGTGACGGTTCTGATTTTTGCGGCTGGACCTCGACTACC
CACCCGATCAGTGTCGCAGCTGCTGCAAGTCTTACACGAGCACTGGGAAG
CGAACCAGGGGCAGTGTATCCAGGTCGCCCGGGCCCTGCACGGGGCGCTC
GGGGCCCGGGGATTCCGGCTTCTTGTGCCCGACTTGCTTCCGCTGGTGCT
AGGAACTCTTGAGTCTGAGGGGGATAGCGTGCAAGGGGGGACGACAGGGA
GGCGTGAGAGCTTGGCGGTCATGCGGCTCCTGGCGACCGTGAAGCACTGG
GAAGCGAACCAGGGGCAGTGTATCCAGGTCGCCCGGGCCCTGCACGGGGC
GCTCGGGGCCCGGGGATTCCGGCTTCTTGTGCCCGACTTGCTTCCGCTGG
TGCTAGGAACTCTTGAGTCTGAGGGGGATAGCGTGCAAGGGGGGACGACA
GGGAGGCGTGAGAGCTTGGCGGTCATGCGGCTCCTGGCGACCGTGAAGGA
CAGCGTCGAGGACCACTTACAGCTCCTCCTGCCCTTGTTGCTGAGGATAC
TCGAGAGGAGAGATCTCGGGATCGACGTCCGCATCGTCGCCTTGGTCGTG
ATCCTTCAGCTGACGGCCCACGGCGATTATCTCCTCGACAGTGCCTCGAG
GACAGCGTCGAGGACCACTTACAGCTCCTCCTGCCCTTGTTGCTGAGGAT
ACTCGAGAGGAGAGATCTCGGGATCGACGTCCGCATCGTCGCCTTGGTCG
TGATCCTTCAGCTGACGGCCCACGGCGATTATCTCCTCGACAGTGCCTCG
AGGGTCGTGCACACATTGATCCGCCTCGTGGGCACGGAGGGCAGGACGAG
TTTGGCGACCGGCTCCGCTCCCTCGGCGACCGCGACCGTAGCTGCCGCTC
GCAGTGCAGTGGTCGTGCACACATTGATCCGCCTCGTGGGCACGGAGGGC
AGGACGAGTTTGGCGACCGGCTCCGCTCCCTCGGCGACCGCGACCGTAGC
TGCCGCTCGCAGTGCAGTGTCATCCGCCCTCGGCTCCAGCACCAGCGGAG
ACGTGGAAGGCGCTCGAGGAGGCGGCGCCAGGATAAGCGTTGGCCTGGGG
TCACCGAGAGAGCTGGCCAGGATAGGGGTGCTCGGCCTCTGCTGCATCGT
CTGCCGCCTCAAGATGCGGTATGTCCCTTTCGTTACACCCGCCCACCACC
AGGCAAGTCTGACAGTACGCTTGAGAGATTACATCTCTGACCCATGTTTG
GCGGAGGGGAGGTATAGGTAGGTCATCCGCCCTCGGCTCCAGCACCAGCG
GAGACGTGGAAGGCGCTCGAGGAGGCGGCGCCAGGATAAGCGTTGGCCTG
GGGTCACCGAGAGAGCTGGCCAGGATAGGGGTGCTCGGCCTCTGCTGCAT
CGTCTGCCGCCTCAAGATGCGGTATGTCCCTTTCGTTACACCCGCCCACC
ACCAGGCAAGTCTGACAGTACGCTTGAGAGATTACATCTCTGACCCATGT
TTGGCGGAGGGGAGGTATAGGTAG
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