prot_H-elongata_contig1247.1865.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1247.1865.1
Unique Nameprot_H-elongata_contig1247.1865.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length488
Homology
[Close]
BLAST of mRNA_H-elongata_contig1247.1865.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.080e-8
Identity = 60/160 (37.50%), Postives = 71/160 (44.38%), Query Frame = 0 
Query:  334 ATAVTAAEGEESYD--DEWXXXXXXXFGGASTGAGIIKGYDLDSG---DTFAGALHEADGGGAGAAGGGEQAIASYLQWGAEGGVWYGDGNPGHGDMYGEGPDKDEQWGAQGWAGGGQQHHGAFGSPLRWSGGPEAASSFMRPVDALGPGLEEHIPFMVT 488
            AT  T A G E+    D W         G+   AG I GYDL++G   +TF   +   DGG AG      +A  SY+QWGAEGGVW+GDG    G               QG  G                    A +  M P DALG GLEEH+PFMVT
Sbjct: 1962 ATGATIAGGFEAGTGADLWWDDEGWHGFGSGVSAGHISGYDLENGGDDNTFGWRVGGGDGGAAG------KAAQSYIQWGAEGGVWFGDG----GXXXXXXXXXXXXXXGQGQWGXXXXXXXXXXXXXXXXXXXXAGAGIMLPADALGTGLEEHLPFMVT 2111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1247.1865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE2.080e-837.50LysM domain-containing protein (Fragment) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1247contigH-elongata_contig1247:6089..8054 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1247.1865.1mRNA_H-elongata_contig1247.1865.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1247 6089..8054 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1247.1865.1 ID=prot_H-elongata_contig1247.1865.1|Name=mRNA_H-elongata_contig1247.1865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=488bp
GVGGVSGGIGGDGARSAGMYRNHAVLGVRLPSSEADPSAMLLSPTWPRGV
RSGFGTGASIGDGVREPLPEIPDHSPLQKQQQPQSSAQSSPASPSAPAPA
TAVVGGGVGAESSTTPPLPRIPRTVGDGDTGRGRGGSARVFLQRAEDSAA
VNREGVSGGGGGGDSGGDEGQREDGGASGRGGGEGAGDVDARGRAVSGEE
KCKGSDTNMDRGFRDTAEGGGSGGVSGGGTGGRSRSSTRSSSVSTSVGGE
RVNDPRCFEDRVEMRRRQISIDESFSSASSSQSSTGESSQVEVGVEASRH
DAPLQVWPLLPSEGRGASQPAPRTGEDEGSSPRATAVTAAEGEESYDDEW
HDDEWHDFGGASTGAGIIKGYDLDSGDTFAGALHEADGGGAGAAGGGEQA
IASYLQWGAEGGVWYGDGNPGHGDMYGEGPDKDEQWGAQGWAGGGQQHHG
AFGSPLRWSGGPEAASSFMRPVDALGPGLEEHIPFMVT
back to top