prot_H-elongata_contig12466.1858.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12466.1858.1
Unique Nameprot_H-elongata_contig12466.1858.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
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BLAST of mRNA_H-elongata_contig12466.1858.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.460e-18
Identity = 55/129 (42.64%), Postives = 64/129 (49.61%), Query Frame = 0 
Query:    1 MQADGVAADRNSYFFAVSACSRRGVTRTALELVAEMKAA------------------------QTKGGPAPDLLLXXXXXXXXXXXXXXXXXXXXXXXXXXAGVRPNVIVVNTVLSACAKCGQIERAKE 105
            MQ+DGV  DR+SYFF +SACS+RG  +TAL L+AEMKA                            G PAPDLLL                          AGV PNV+VVNT LSACAKCGQ+ RA +
Sbjct:  192 MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQ 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12466.1858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI1.460e-1842.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 71..104
e-value: 0.0011
score: 19.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 52..84
e-value: 6.5E-6
score: 24.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 48..82
score: 10.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 6.763
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 83..105
score: 7.454
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..105
e-value: 1.7E-22
score: 82.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12466contigH-elongata_contig12466:4372..5079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12466.1858.1mRNA_H-elongata_contig12466.1858.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12466 4372..5101 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12466.1858.1 ID=prot_H-elongata_contig12466.1858.1|Name=mRNA_H-elongata_contig12466.1858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MQADGVAADRNSYFFAVSACSRRGVTRTALELVAEMKAAQTKGGPAPDLL
LYAVAVKACAGGKSWREALDLLDEMSAAGVRPNVIVVNTVLSACAKCGQI
ERAKE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf