mRNA_H-elongata_contig12460.1851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12460.1851.1
Unique NamemRNA_H-elongata_contig12460.1851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A6H5JKZ2_9PHAE (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ2_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 5.700e-117
Identity = 188/298 (63.09%), Postives = 215/298 (72.15%), Query Frame = 1
Query:    1 KVIRGAWTAEAE-------RSGPGQSGAWTIRRQVVEYHDGGVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFP---------AVPGLRAVASLHGILAPMLPGAGKNP----AAEDAPVG-PRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERLV 831
            KVIR AW            R     S +W+IRR VVEY+DG   LQGL+  PEG+G+P+R+PGVILAHTAVG QED ILWKLD IA LGYAAFALDMFG GRALW+RAESL ARRPITEDRSL+Q RA AAVRTL ++EG+D +RLAAVGYCFGGM VLDLARM             P L+AVASLHGILAP+ PG G       AA+DA +  PRVLVLHAT DPFV PEQV+A++EE  RR A L +VRYGG A HAFTRPEKT + D  AGLSY  +A+ DSW+RVV  L+E   
Sbjct:   71 KVIRAAWAVATTNPDTTNGRGASSSSASWSIRRSVVEYNDGDTALQGLYTRPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDQIALLGYAAFALDMFGTGRALWNRAESLAARRPITEDRSLMQARATAAVRTLSQMEGIDEERLAAVGYCFGGMTVLDLARMVRPDGDDAGANTPPRLKAVASLHGILAPISPGTGGEDGAGLAADDAALAVPRVLVLHATADPFVPPEQVRAMEEELSRRGARLEVVRYGGSAMHAFTRPEKTSQVDRDAGLSYCKYAEEDSWRRVVELLREEFA 368          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A836CLU0_9STRA (Dienelactone hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.030e-59
Identity = 122/253 (48.22%), Postives = 155/253 (61.26%), Query Frame = 1
Query:   70 IRRQVVEYHDG-GVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQAD-LSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKE 822
            ++RQ+V Y D  G+ LQG    P      E +P V++AHTAVG Q+D +L  LD +A LGY AF LDMFGAG+A+WDR +SL AR P+T DRSLL  RA AA+    +L GVD+ R+A VGYCFGG+V LD  R   A  G+ A  + HGILAP  P    +   +    G RVLVLH   DPFV P+QV+A + E         S++ Y G ARHAFTRPEK  + D +AGL YD  A    W  + G L++
Sbjct:   39 LQRQIVPYIDHTGLPLQGFVVRPAAQAA-ESLPCVLVAHTAVGIQDDLLLQILDGVAGLGYVAFGLDMFGAGQAVWDREQSLAARAPLTSDRSLLARRAEAALHCATQLRGVDARRVAVVGYCFGGIVALDTVR---AGCGIAAAITFHGILAPPPPDQDLS-WCKHYSTGCRVLVLHGGADPFVPPDQVRAFEAEMAAAGVQQCSVIVYDG-ARHAFTRPEKVLDSDRSAGLFYDAAAAEAGWAAMRGCLEQ 285          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A7S0HUL7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUL7_9CRYP)

HSP 1 Score: 200 bits (508), Expect = 2.330e-59
Identity = 115/254 (45.28%), Postives = 151/254 (59.45%), Query Frame = 1
Query:   70 IRRQVVEYHDGGVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILA-PMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERL 828
            +++  V Y +GG  L G    P+     +++P V+L HTAVG QEDF+ WKL+++A LG+ AF  DMFG GRALWDR E+L ARR +  DR  +  R  AA  T+  L  VD     A+G+CFGGM VLDLAR    +P L A  S HGIL  P LP    +    + PV   +LV H  DDPFV  E +    E  + R+++  +  Y G A+HAFTRPEKT   D +AGL Y+  AD DS +R+ G L+ RL
Sbjct:   36 LKKSSVSYSEGGRELMGEACWPDVGN--QKMPAVLLVHTAVGLQEDFMRWKLEAVASLGFVAFGADMFGTGRALWDREEALEARRELVCDRRRMIDRVKAAATTMMSLPQVDPRGFGALGFCFGGMAVLDLARS-GCMPNLEATVSFHGILDDPDLPD---DYGGREGPVPGEILVCHGEDDPFVSSENLNLFLENLKLRKSNFHLQAYPG-AKHAFTRPEKTEPSDFSAGLFYNEQADRDSSERMKGMLRRRL 282          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A0G4EJ35_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ35_VITBC)

HSP 1 Score: 179 bits (455), Expect = 3.010e-51
Identity = 110/265 (41.51%), Postives = 148/265 (55.85%), Query Frame = 1
Query:   64 WTIRRQVVEYHDGGVTLQGLHAMPEGDGIPERI----PGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERLV*YSAP 846
            WT ++  V Y D G  L GL    E D    +I    P V++  TAVG +EDF+   LD  A LGY AF +DM+G G A+WD+  S   R+P+T DR+ LQ R +AA +    L  V  D +A VGYCFGGM  LDLAR    VP ++ V S HG+L    P   K P     PV    LV H +DDPF+ P+Q QA ++E   ++ D  I  YGG A+H+FTRPEK  + D  AGL Y   ++  S++     L++    +S+P
Sbjct:   42 WTYKQTDVAYQDEGTELMGLAVWVERDDASRQILGERPCVLVCPTAVGLREDFLFGALDRYASLGYVAFGVDMYGEG-AVWDKGRSRAIRQPLTADRTKLQRRMVAAYQAAQSLPQVQEDNIAVVGYCFGGMCALDLARA--GVP-MKGVVSFHGVLD--RPAVDKVPGGLSCPV----LVHHGSDDPFISPDQFQAFQQELSDQRTDWQIHIYGG-AKHSFTRPEKVTQADRDAGLQYCPKSERRSYRTTKAFLQDIFPDFSSP 295          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A7S1HA30_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA30_HEMAN)

HSP 1 Score: 175 bits (444), Expect = 8.590e-51
Identity = 105/211 (49.76%), Postives = 129/211 (61.14%), Query Frame = 1
Query:  202 EDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVP-GLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQA-DLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERL 828
            EDF+ WKLD +A  GY AF +DMFGAGRALWD+ E+L AR+P+ EDRS +  R + A  T   +E  DS R+ A+GYCFGGM VLDLAR    +P  L+A  SLHGIL  +       P  +   V  +VLV H   DPFV PE ++  + +   R A DL I  Y G ++HAFTRPEKT EGD+AAGL Y   ADA SW      L   L
Sbjct:    1 EDFMFWKLDKLASQGYLAFGVDMFGAGRALWDKEEALAARKPLREDRSQMIERMMCAYETACSMEVADSARVGAIGYCFGGMAVLDLARS--GLPKSLKATVSLHGILDRL-----DTPPTD---VVGKVLVCHGGSDPFVTPEMLRDFESDMAARNAEDLHIHTYSG-SKHAFTRPEKTTEGDSAAGLYYCELADAASWAAASALLDSCL 200          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A7S1J2W1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J2W1_9EUGL)

HSP 1 Score: 164 bits (416), Expect = 1.360e-46
Identity = 102/210 (48.57%), Postives = 124/210 (59.05%), Query Frame = 1
Query:  226 DSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAV---------RTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERL 828
            +++A LGY AFA+DM GAGRALWD AE+ TAR P+ EDR LL++R  AA+         + LG    +D DR+AAVGYCFGG+ VLDLAR     PGLR V S HGIL       G  P  E   + PR+LV +   DPFV P++ +    E  RR A L  V + G ARH FTRPEK    D AAG  YD  ADA SW  +   L + L
Sbjct:    1 EALASLGYVAFAVDMLGAGRALWDGAEAKTARAPLYEDRRLLRSRMQAALTAASADSFAQALGPNVALDLDRVAAVGYCFGGLCVLDLAR--GNAPGLRGVVSFHGIL-----DGGGLPDPETDALRPRILVHNGDADPFVPPDKREQFLAEMGRRHAPLEFVSHPG-ARHGFTRPEKVQPADFAAGFGYDPQADAASWGSMKAFLADVL 202          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A5Q0BHN0_9GAMM (Dienelactone hydrolase family protein n=1 Tax=Candidatus Methylospira mobilis TaxID=1808979 RepID=A0A5Q0BHN0_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 1.870e-43
Identity = 102/257 (39.69%), Postives = 144/257 (56.03%), Query Frame = 1
Query:   67 TIRRQVVEYHDGGVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGP---RVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERL 828
            TIR ++VEYH   VTLQG  A  +    P+  PGV+++H+ VG +++F+  K  ++A  G+AAFALDM+GAG+   +  E+    +P  +DR+LLQ R L+A+  L  LE VD++++AA+G+CFGG+ VLDLAR    + G   VAS HG+L           A E+ P  P   R+L LH  +DP   PE V A+++E     AD     Y     HAFT P      D   G  Y+  AD  SW  ++  L E L
Sbjct:    2 TIRTRLVEYHHDNVTLQGFFAWDDSKATPQ--PGVLISHSWVG-RDEFVCRKAIALAEAGHAAFALDMYGAGKTGSNPQENELLMKPFMQDRTLLQGRILSALHALRSLEEVDANKIAAIGFCFGGLCVLDLARTGIDIQG---VASFHGLLT----------APENIPPHPISARILALHGHNDPLAPPEHVTALQKELTAAGADWQTHVYSNTV-HAFTNPLAN---DPGFGTVYNPAADRRSWTSLLNFLHEVL 238          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A7S3E3V3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E3V3_9CHLO)

HSP 1 Score: 157 bits (397), Expect = 3.000e-42
Identity = 106/252 (42.06%), Postives = 133/252 (52.78%), Query Frame = 1
Query:   88 EYHDGGVTLQGLHAMPEGDGIPERI-PGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGIL-APMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERR---QADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERL 828
            EY  G V L G  A  EG     R  P V++ HTA+G  E+FI+ KL  +A LGY AF +DMFGA   +    E +   +   +DR LLQ+R LAA      L   D+ R+AA+GYCFGG  VLDLAR    V GLRA  S HGIL AP+          E  P+  RV+  H + DPF+  E   +   E E R        +V +GG   HAFTRP+KT E D   GL YD +A   SW  +V  L E +
Sbjct:   95 EYGHGDVKLFGYVA--EGAATASRPRPAVLVVHTAIGPHEEFIMDKLRRLAELGYVAFGVDMFGAEAVVLGE-EKVRYNKQFKDDRKLLQSRILAAFHEAASLPFTDASRVAAIGYCFGGKAVLDLARS--GVEGLRASISFHGILDAPV--------ELEGTPITARVVAFHGSRDPFIALEDKLSFHSEMESRCRGSKKWQMVEFGG-CYHAFTRPDKTQESDRTQGLFYDEYAAEKSWAMMVDVLAEEM 332          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A6L8HPZ1_9BACT (Dienelactone hydrolase family protein n=3 Tax=Acidobacteriia bacterium TaxID=2081523 RepID=A0A6L8HPZ1_9BACT)

HSP 1 Score: 154 bits (390), Expect = 3.080e-42
Identity = 104/245 (42.45%), Postives = 129/245 (52.65%), Query Frame = 1
Query:   70 IRRQVVEYHDGGVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRV 804
            I  +  EY DG   L+G  A    D   +  PGV++AHT  G    F   K   IA LGY A A+DM+G G       E+      + EDRSLLQ R  AA+  L    GVDS+R AA+GYCFGG+ VLDLAR   +    +A  S HG+L P  PG       E A V PRVLVLH  DDP  +P+ V+A+ EEF R  AD  +  YG +  HAFT PE     +   G  Y+  AD  SW  +
Sbjct:    3 ITTEAFEYSDGSTLLRGQLACD--DTWTDPRPGVLIAHTWAGCGP-FEQGKAADIAELGYVALAVDMYGGGIVGHSTEENAKLMSVVLEDRSLLQRRMTAALDALKAFPGVDSERTAAIGYCFGGLCVLDLARTGAS---FQAAVSFHGLLNP--PG-----NIEVADVSPRVLVLHGWDDPMAKPDSVEALAEEFTRAGADWQVHAYG-RTMHAFTNPEAN---NLDMGTVYNAQADRRSWNSM 230          
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Match: A0A4V1Z9F2_9GAMM (Dienelactone hydrolase family protein n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A4V1Z9F2_9GAMM)

HSP 1 Score: 153 bits (387), Expect = 8.140e-42
Identity = 101/251 (40.24%), Postives = 135/251 (53.78%), Query Frame = 1
Query:   79 QVVEYHDGGVTLQGLHAMPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVGYCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVGPRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPEKTGEGDAAAGLSYDHHADADSWQRVVGPLKERLV 831
            + ++Y  G   L+G  A  E   +P  +P V++AH A G ++DF+  K   +A LGYAAFALDM+G G       ++    +P   DR+LLQ R   A+  +  L  VD DR+AA+G+CFGG+ VLDLAR   +   LR V S HG+    +P AG      + P+  +VL LH  DDP V PEQV A+ +E     AD  I  YG +  HAFT P      D   G  YD  ADA SW  +   L+E L 
Sbjct:    6 RTIDYRHGPQPLEGFLAYDES--LPGPLPAVLIAH-AWGGRDDFVCGKARRLAELGYAAFALDMYGKGVLGTGPEQNAQLMQPFMADRALLQGRMQQALEVVKALPQVDPDRVAAMGFCFGGLCVLDLAR---SGAELRGVISFHGLF---VPPAG----VPNQPIRAKVLALHGYDDPMVPPEQVTALAQELTAAGADWQIHMYG-RTTHAFTNPAAN---DPGFGTVYDATADARSWLSLQSFLREVLT 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12460.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ2_9PHAE5.700e-11763.09DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CLU0_9STRA2.030e-5948.22Dienelactone hydrolase family protein n=1 Tax=Trib... [more]
A0A7S0HUL7_9CRYP2.330e-5945.28Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0G4EJ35_VITBC3.010e-5141.51DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S1HA30_HEMAN8.590e-5149.76Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1J2W1_9EUGL1.360e-4648.57Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A5Q0BHN0_9GAMM1.870e-4339.69Dienelactone hydrolase family protein n=1 Tax=Cand... [more]
A0A7S3E3V3_9CHLO3.000e-4242.06Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A6L8HPZ1_9BACT3.080e-4242.45Dienelactone hydrolase family protein n=3 Tax=Acid... [more]
A0A4V1Z9F2_9GAMM8.140e-4240.24Dienelactone hydrolase family protein n=2 Tax=Meth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12460contigH-elongata_contig12460:3617..5635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.6
Seed ortholog evalue7.9e-86
Seed eggNOG ortholog2880.D8LC04
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGs2SB8C@2759,COG0412@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size892
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12460.1851.1prot_H-elongata_contig12460.1851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12460 3746..5577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.9407792-UTR-H-elongata_contig12460:3616..37451622929734.9407792-UTR-H-elongata_contig12460:3616..3745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12460 3617..3745 +
1691679137.5072615-UTR-H-elongata_contig12460:3616..37451691679137.5072615-UTR-H-elongata_contig12460:3616..3745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12460 3617..3745 +
1622929734.9938326-UTR-H-elongata_contig12460:5577..56351622929734.9938326-UTR-H-elongata_contig12460:5577..5635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12460 5578..5635 +
1691679137.5467203-UTR-H-elongata_contig12460:5577..56351691679137.5467203-UTR-H-elongata_contig12460:5577..5635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12460 5578..5635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.9588351-CDS-H-elongata_contig12460:3745..38211622929734.9588351-CDS-H-elongata_contig12460:3745..3821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 3746..3821 +
1691679137.5186098-CDS-H-elongata_contig12460:3745..38211691679137.5186098-CDS-H-elongata_contig12460:3745..3821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 3746..3821 +
1622929734.9707527-CDS-H-elongata_contig12460:4469..48971622929734.9707527-CDS-H-elongata_contig12460:4469..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 4470..4897 +
1691679137.5282667-CDS-H-elongata_contig12460:4469..48971691679137.5282667-CDS-H-elongata_contig12460:4469..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 4470..4897 +
1622929734.9806924-CDS-H-elongata_contig12460:5376..55771622929734.9806924-CDS-H-elongata_contig12460:5376..5577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 5377..5577 +
1691679137.537421-CDS-H-elongata_contig12460:5376..55771691679137.537421-CDS-H-elongata_contig12460:5376..5577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12460 5377..5577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12460.1851.1

>prot_H-elongata_contig12460.1851.1 ID=prot_H-elongata_contig12460.1851.1|Name=mRNA_H-elongata_contig12460.1851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
MPEGDGIPERIPGVILAHTAVGSQEDFILWKLDSIARLGYAAFALDMFGA
GRALWDRAESLTARRPITEDRSLLQTRALAAVRTLGRLEGVDSDRLAAVG
YCFGGMVVLDLARMFPAVPGLRAVASLHGILAPMLPGAGKNPAAEDAPVG
PRVLVLHATDDPFVRPEQVQAIKEEFERRQADLSIVRYGGKARHAFTRPE
KTGEGDAAAGLSYDHHADADSWQRVVGPLKERLV*
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mRNA from alignment at H-elongata_contig12460:3617..5635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12460.1851.1 ID=mRNA_H-elongata_contig12460.1851.1|Name=mRNA_H-elongata_contig12460.1851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2019bp|location=Sequence derived from alignment at H-elongata_contig12460:3617..5635+ (Himanthalia elongata Himel1 dioecious)
AAGGTCATTCGTGGAGCCTGGACCGCGGAAGCCGAACGATCAGGCCCCGG TCAGAGCGGCGCTTGGACCATCCGGCGCCAGGTCGTGGAGTACCACGACG GAGGCGTGACCCTCCAGGGGCTGCACGCGATGCCGGAGGGAGACGGGATA CCGGAACGGATCCCCGGCGTGATTCTTGCGCACACCGCGGTCGGATCTCA AGAAGGTGCGCAAAATGAAGCCAGCATATATATAATATATATGTATATAT ATATATATATATTCGCAGACGTACACGTAGCAGGCAGCTGTCCTGATGCC CCAACCGCGCCATGGTCTTCGCGCGCGGCGATTCACTCTCCCGATTGGAG CGCGCAGCGCGTTGGCACCTGTTTTGTCACCTAATTTCGGCTTGGTTTTA GACAGAAGTCCACCGGCCACCGGAGAGGATCTGCTGGCCGCGACTATGGC TGGACATGGTGGTTTCAAATTTGAAGCTGCTGAGACCCCCGCAGCTGCAG TAGCGCGTACCTTAGTGGTTTAGGGATAAGTTTTGAGGATACCGCGCCCC CTCCTCAGTGCGCTCATCCATAATCTTCGGGCGAAGAAACTCTTCAGACG AGCAAGGCCTTGACGCCGTTCCCGAAAGATCCACAGCCGGAGATCCAACG GTGCCGCGGAGCCATGTGCCTTGCTTCAGTAGTCGCGCGACTCTGAGAAA AGAATCCAAAGTAATCGCCACGGAACCTCACCTCTCCACCACATATTGTT CTTGATATACTAACCCGATTTTTGGTGCCTTGACGTTACCCCCATCTGCC ATCTCCCAACAATCTCTACGCGAATGCTCGAGCAACGATCGAGAAACGAC CAGATTTCATCCTGTGGAAGCTGGATTCGATTGCCCGCCTCGGCTACGCG GCCTTCGCCCTTGACATGTTTGGAGCCGGTCGCGCGTTGTGGGACCGCGC GGAGAGCCTCACCGCTCGACGACCCATCACCGAAGACCGATCTCTCTTGC AAACCCGCGCGCTCGCGGCCGTGCGGACGCTGGGTCGCTTAGAGGGGGTC GATTCGGACCGTCTCGCCGCGGTCGGCTACTGCTTCGGGGGCATGGTGGT ACTCGACCTCGCGAGGATGTTCCCCGCGGTTCCTGGGCTGAGGGCGGTGG CTTCTCTCCACGGGATTCTCGCGCCGATGCTGCCCGGCGCGGGAAAAAAC CCGGCGGCGGAAGACGCCCCGGTCGGCCCGAGGGTGCTCGTGCTGCACGC CACCGACGATCCCTTCGTCCGCCCTGAGCAGGTTCGTTTATGATGTAGGT GTACTATTATAAGCAGTTATGGGAGAGAAGAGAGCCTGAGAGATTCATGG TGGCATCCCTGCGGACGGGTCGAAGGGGCTTGTAAAGTTTTCCACAAGAG CGGATGATGGATTGTCCGAAACTTCATTTTTGACATCTAAAATGTGCTGT GACATCGCGTCGTACCTAGTGGAGAAGGGTGGAGCTGGTCGTCGACCGCT CTTCCCTCTTCTCCGCTTCGTAGAAGGCATTTCGATAAAAATCCCACTGA AAGACCCCGCGCCAGGGGAGCAAAATAATAAATCATAGATAGTCAGTCTT ACCACCCCCCCAAGATCATCAACTTCTTCCCCTCAGCAAACAACCCATGT ACTCCGAAAGACGGCGTCACGGGGGGTTTGCCTGAACAAAAAAATGGTGA TGTGTTCGAAACGTGTTCGGTGCTTTTCGGAATAACTCTCTCTCTTTCTC CGTATGATAGGTGCAGGCAATAAAGGAAGAATTCGAACGACGACAAGCGG ACCTGTCAATTGTGAGATACGGGGGGAAGGCGCGGCACGCCTTCACGAGG CCCGAGAAGACGGGGGAGGGTGACGCGGCCGCGGGGCTCTCGTACGACCA CCACGCCGACGCGGACTCGTGGCAACGGGTCGTTGGGCCCCTCAAAGAAA GGCTGGTGTGATATTCAGCGCCAACACGCGCTGATAACTCCGGTTATGGT GTTGTGCTTCGAGGCGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig12460:3617..5635+

>mRNA_H-elongata_contig12460.1851.1 ID=mRNA_H-elongata_contig12460.1851.1|Name=mRNA_H-elongata_contig12460.1851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig12460:3617..5635+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGAGGGAGACGGGATACCGGAACGGATCCCCGGCGTGATTCTTGC
GCACACCGCGGTCGGATCTCAAGAAGATGCCGGAGGGAGACGGGATACCG
GAACGGATCCCCGGCGTGATTCTTGCGCACACCGCGGTCGGATCTCAAGA
AGATTTCATCCTGTGGAAGCTGGATTCGATTGCCCGCCTCGGCTACGCGG
CCTTCGCCCTTGACATGTTTGGAGCCGGTCGCGCGTTGTGGGACCGCGCG
GAGAGCCTCACCGCTCGACGACCCATCACCGAAGACCGATCTCTCTTGCA
AACCCGCGCGCTCGCGGCCGTGCGGACGCTGGGTCGCTTAGAGGGGGTCG
ATTCGGACCGTCTCGCCGCGGTCGGCTACTGCTTCGGGGGCATGGTGGTA
CTCGACCTCGCGAGGATGTTCCCCGCGGTTCCTGGGCTGAGGGCGGTGGC
TTCTCTCCACGGGATTCTCGCGCCGATGCTGCCCGGCGCGGGAAAAAACC
CGGCGGCGGAAGACGCCCCGGTCGGCCCGAGGGTGCTCGTGCTGCACGCC
ACCGACGATCCCTTCGTCCGCCCTGAGCAGATTTCATCCTGTGGAAGCTG
GATTCGATTGCCCGCCTCGGCTACGCGGCCTTCGCCCTTGACATGTTTGG
AGCCGGTCGCGCGTTGTGGGACCGCGCGGAGAGCCTCACCGCTCGACGAC
CCATCACCGAAGACCGATCTCTCTTGCAAACCCGCGCGCTCGCGGCCGTG
CGGACGCTGGGTCGCTTAGAGGGGGTCGATTCGGACCGTCTCGCCGCGGT
CGGCTACTGCTTCGGGGGCATGGTGGTACTCGACCTCGCGAGGATGTTCC
CCGCGGTTCCTGGGCTGAGGGCGGTGGCTTCTCTCCACGGGATTCTCGCG
CCGATGCTGCCCGGCGCGGGAAAAAACCCGGCGGCGGAAGACGCCCCGGT
CGGCCCGAGGGTGCTCGTGCTGCACGCCACCGACGATCCCTTCGTCCGCC
CTGAGCAGGTGCAGGCAATAAAGGAAGAATTCGAACGACGACAAGCGGAC
CTGTCAATTGTGAGATACGGGGGGAAGGCGCGGCACGCCTTCACGAGGCC
CGAGAAGACGGGGGAGGGTGACGCGGCCGCGGGGCTCTCGTACGACCACC
ACGCCGACGCGGACTCGTGGCAACGGGTCGTTGGGCCCCTCAAAGAAAGG
CTGGTGTGAGTGCAGGCAATAAAGGAAGAATTCGAACGACGACAAGCGGA
CCTGTCAATTGTGAGATACGGGGGGAAGGCGCGGCACGCCTTCACGAGGC
CCGAGAAGACGGGGGAGGGTGACGCGGCCGCGGGGCTCTCGTACGACCAC
CACGCCGACGCGGACTCGTGGCAACGGGTCGTTGGGCCCCTCAAAGAAAG
GCTGGTGTGA
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