mRNA_H-elongata_contig1245.1840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1245.1840.1
Unique NamemRNA_H-elongata_contig1245.1840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1245.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1245contigH-elongata_contig1245:3771..4283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size513
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1245.1840.1prot_H-elongata_contig1245.1840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1245 3972..4115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.8814316-UTR-H-elongata_contig1245:3770..39711622929733.8814316-UTR-H-elongata_contig1245:3770..3971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1245 3771..3971 +
1691679137.1800973-UTR-H-elongata_contig1245:3770..39711691679137.1800973-UTR-H-elongata_contig1245:3770..3971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1245 3771..3971 +
1622929733.9170454-UTR-H-elongata_contig1245:4115..42831622929733.9170454-UTR-H-elongata_contig1245:4115..4283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1245 4116..4283 +
1691679137.195706-UTR-H-elongata_contig1245:4115..42831691679137.195706-UTR-H-elongata_contig1245:4115..4283Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1245 4116..4283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.8992133-CDS-H-elongata_contig1245:3971..41151622929733.8992133-CDS-H-elongata_contig1245:3971..4115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1245 3972..4115 +
1691679137.188547-CDS-H-elongata_contig1245:3971..41151691679137.188547-CDS-H-elongata_contig1245:3971..4115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1245 3972..4115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1245.1840.1

>prot_H-elongata_contig1245.1840.1 ID=prot_H-elongata_contig1245.1840.1|Name=mRNA_H-elongata_contig1245.1840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MYKNCEIVRIASPGSYKAWADEFGLEFVEFDDATPNYVTQYTFVSIV*
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mRNA from alignment at H-elongata_contig1245:3771..4283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1245.1840.1 ID=mRNA_H-elongata_contig1245.1840.1|Name=mRNA_H-elongata_contig1245.1840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig1245:3771..4283+ (Himanthalia elongata Himel1 dioecious)
CCATTTGCGTTTTAGCTGTAACTACAAGTAAAACTTGTACTGACGTCTTC
GCCTTGCTTCGCTTTTTTTTTCTCATGTTTGCTCACCCACCTTGCTTGGT
AGACTCCTGAGAGATGAAATATCTACCCAACGCGTTAAATTTGGTCAGCA
GTCTACCCTACTAGTCCCGCGTCCTTCAATACCTGTTTTACCCCCATTCA
GATGTACAAGAACTGTGAAATCGTCCGCATTGCCAGCCCCGGGTCGTACA
AAGCCTGGGCTGACGAGTTTGGCCTGGAATTCGTGGAGTTCGACGACGCC
ACCCCCAACTATGTCACACAGTACACCTTCGTAAGCATCGTTTGACGGCG
ATCGATGACGGCGATCGCGGCAAAAATAACACGGTATTGTATGAAGACAT
AGTACACACTTTTCGTTGTAGTTTACACCAACTATACGTACCATCATCTT
GTGCTTAGGTAGTGATAACCTGGCTTGGGTCCCATATCATTATTCTTGAT
GAATCCGGGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1245:3771..4283+

>mRNA_H-elongata_contig1245.1840.1 ID=mRNA_H-elongata_contig1245.1840.1|Name=mRNA_H-elongata_contig1245.1840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig1245:3771..4283+ (Himanthalia elongata Himel1 dioecious)
ATGTACAAGAACTGTGAAATCGTCCGCATTGCCAGCCCCGGGTCGTACAA
AGCCTGGGCTGACGAGTTTGGCCTGGAATTCGTGGAGTTCGACGACGCCA
CCCCCAACTATGTCACACAGTACACCTTCGTAAGCATCGTTTGAATGTAC
AAGAACTGTGAAATCGTCCGCATTGCCAGCCCCGGGTCGTACAAAGCCTG
GGCTGACGAGTTTGGCCTGGAATTCGTGGAGTTCGACGACGCCACCCCCA
ACTATGTCACACAGTACACCTTCGTAAGCATCGTTTGA
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