prot_H-elongata_contig124420.1830.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig124420.1830.1
Unique Name	prot_H-elongata_contig124420.1830.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	101

Homology

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.450e-47
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 101
            GLGAS+QGISQPLQSM+AGGGMGVIDMH +DKKRMGG  D     A P RKKRGLFSNPTRVLLLKNMVGPGEVD ELEGET GECERFGPVRRC+I+E+K
Sbjct:  308 GLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTP---AAPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 405

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.480e-47
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 101
            GLGAS+QGISQPLQSM+AGGGMGVIDMH +DKKRMGG  D     AP  RKKRGLFSNPTRVLLLKNMVGPGEVD ELEGET GECERFGPVRRC+I+E+K
Sbjct:  323 GLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTP---APAARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 420

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A6U3SBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SBK6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.330e-26
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 101
            GLG   QGIS+PL++   GGG G +        +   T    PP  P  +KKR LF NPT VLLLKNMVGPGEVD+ELE E Q EC +FGPVR C+++E+K
Sbjct:   45 GLGREGQGISRPLEARPTGGGQGAVANPGARGNQKLST-SMLPPPGPAAKKKRALFRNPTTVLLLKNMVGPGEVDSELEKEVQEECSKFGPVRTCVVYELK 144

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A835ZCV1_9STRA (Putative DNA-damage repair protein drt111 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.780e-23
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFE 99
            GLG S QGISQP+ + + G GMG + MH  D+KR                 KRGLFSNPT VLLLKNMVG GEVD++LEGE + EC ++GPVR+C++ E
Sbjct:  260 GLGKSGQGISQPIVAQSTGVGMGTVAMHPADRKRPAQAAXXXXXXXX-XSAKRGLFSNPTCVLLLKNMVGAGEVDSDLEGEVKEECMKYGPVRQCLVRE 357

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: W7TGN1_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGN1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.480e-22
Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTG----DPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 100
            GLG  +QGI++ +++ A GGG GVI          GG G    D           KRGLFSNPT+++LLKNMVGPGEVD +L+GET  EC + GPV  C++FE+
Sbjct:   11 GLGRDRQGITEAIKARALGGGKGVIS-----GPAQGGKGAQDVDRQQXXXXXXXXKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEV 109

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A7S2W0J2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0J2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.400e-18
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0

Query:   43 PPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEMK 101
            PP  PP +KKR LF NP+ VLLLKNMVGPGEVD +L+ E   EC +FGPVR+C+++E K
Sbjct:   65 PPQGPP-KKKRALFRNPSSVLLLKNMVGPGEVDEDLQNEVAEECSKFGPVRQCVVYEHK 122

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A7I8VH22_9ANNE (Splicing factor 45 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VH22_9ANNE)

HSP 1 Score: 77.8 bits (190), Expect = 8.870e-15
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 0

Query:   47 PPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 100
            PP+     L  NP++V++L+NMVGPGEVD ELE ET+GEC+++GPV RC+IFE+
Sbjct:  241 PPIENIGELLKNPSKVVVLRNMVGPGEVDDELEPETKGECQKYGPVVRCVIFEL 294

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A433TQH0_ELYCH (Splicing factor 45 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TQH0_ELYCH)

HSP 1 Score: 72.0 bits (175), Expect = 9.420e-14
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 100
            GLG S+QG+S  L         G I +H+ D            P A        L  NP++VLLL+NMVGPGEVD +LE ET  EC ++G V +C+IFEM
Sbjct:   11 GLGKSEQGMSTALYVEKTSKRGGKI-IHEKDI-----------PKAEQAITNTNLLKNPSKVLLLQNMVGPGEVDEDLEPETAEECSKYGKVNKCVIFEM 98

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: A0A0S7IEE7_9TELE (SPF45 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IEE7_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 0

Query:    1 GLGASKQGISQPL---QSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRG-------LFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM 100
            GLG  +QG+S  L   ++   GG + + D  +       G  DP+   +     K+        +  NPT+V+LL+NMVG GEVD +LEGET+ ECE++G V +C+IFE+
Sbjct:   39 GLGKHEQGLSTALSVEKTSKRGGKIIIGDAAEKPGSSQSGAADPSSGGSAADSSKKSEANPLTEILKNPTKVVLLRNMVGRGEVDEDLEGETKEECEKYGKVVKCVIFEI 148

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BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Match: UPI00081135BE (splicing factor 45-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081135BE)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 0

Query:    1 GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVRKKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFE 99
            GLG  +QGIS+ LQ        G I +    KK       P  PL P            T V+LL+NMVGPGEVD ELE ET+ EC ++GPV RC+IFE
Sbjct:  153 GLGKEEQGISKALQVEKTSKTHGKIVIESDAKK-------PEDPLTP------------TTVVLLRNMVGPGEVDEELEPETKEECSKYGPVSRCVIFE 232

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot

BLAST of mRNA_H-elongata_contig124420.1830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FL75_ECTSI	1.450e-47	82.18	DNA-damage repair protein drt111, putative n=1 Tax...	[more]
A0A6H5KK36_9PHAE	1.480e-47	82.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6U3SBK6_9STRA	1.330e-26	53.47	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835ZCV1_9STRA	1.780e-23	53.54	Putative DNA-damage repair protein drt111 n=1 Tax=...	[more]
W7TGN1_9STRA	7.480e-22	48.08	RNA binding protein n=1 Tax=Nannochloropsis gadita...	[more]
A0A7S2W0J2_9STRA	8.400e-18	62.71	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7I8VH22_9ANNE	8.870e-15	59.26	Splicing factor 45 n=1 Tax=Dimorphilus gyrociliatu...	[more]
A0A433TQH0_ELYCH	9.420e-14	43.00	Splicing factor 45 n=1 Tax=Elysia chlorotica TaxID...	[more]
A0A0S7IEE7_9TELE	1.240e-13	38.18	SPF45 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta...	[more]
UPI00081135BE	1.390e-13	45.45	splicing factor 45-like n=1 Tax=Rhagoletis zephyri...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 60..101 e-value: 7.8E-9 score: 37.5
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig124420	contig	H-elongata_contig124420:91..1654 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig124420.1830.1	mRNA_H-elongata_contig124420.1830.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig124420 91..1654 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig124420.1830.1 ID=prot_H-elongata_contig124420.1830.1|Name=mRNA_H-elongata_contig124420.1830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GLGASKQGISQPLQSMAAGGGMGVIDMHQTDKKRMGGTGDPAPPLAPPVR
KKRGLFSNPTRVLLLKNMVGPGEVDAELEGETQGECERFGPVRRCIIFEM
K

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR040052	RBM17