mRNA_H-elongata_contig12437.1826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12437.1826.1
Unique NamemRNA_H-elongata_contig12437.1826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.120e-39
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  100 MEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            M PI+  ALGG++YV K+ DE TKW E  L+K+K DA+ + QLF QS+V+ + FR++ LR DK  E    E++ +CLQ G  LEYAS N PQQ+G +E  GRTL AMVRC+LTDSGL +FLW +LM TAA+
Sbjct:    1 MGPISLPALGGFRYVNKLVDEKTKWKETFLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAY 131          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.420e-37
Identity = 72/164 (43.90%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC +GKS    HPK   +   + FQ + VD + P TP ALGG+KY  K  D+ TKW EI L+K +  ++ S  LF +  V+ +  R+  LR D   E+ S E++ +C   G+ LE+AS N PQQ+G +E  GRT+  +VRCLL DS L  FLW EL+ TA +
Sbjct:  321 CCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVY 484          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.100e-35
Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC +GKS    HPK A +   + FQ    D + P  P ALGG KY  K  D+ TKW EI L+K +  ++ S  LF +  V+ +  R+  LR D+  E+ S E++ +C   G+ LE+AS NIPQQIG +E  GRT+  +VRCLL DS L  FLW EL+ TA +
Sbjct:   81 CSVCPLGKSAQQPHPKQATYGVLRPFQH---DTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVY 241          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.930e-35
Identity = 66/167 (39.52%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K    +HPK + H+ ++  QL+ +D M P+ P A    G + Y  KI+D+HTK  E++LL+ K D+  +   +   V  A  +R E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAY 243          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.420e-33
Identity = 63/167 (37.72%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  K++D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  401 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 567          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.520e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.660e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.660e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  418 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 584          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.670e-33
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG+SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:   77 CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 243          
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.390e-33
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 1
Query:    1 CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEAL---GGYKYVRKISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEYISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGLTRFLWAELMFTAAF 492
            C VC + K     HPK +  + ++  QL+ +D M P+ P A    G + Y  KI+D++TK  E++LL+ K D   +   +   V  A  +R+E +R DK GE   +E++ +C  + + LEYA+ N PQQIG SE  G+TL  + RCLL D      +W ELM TAA+
Sbjct:  453 CGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAY 619          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12437.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.120e-3955.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE1.420e-3743.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.100e-3544.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFQ6_9PHAE3.930e-3539.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE1.420e-3337.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.520e-3338.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.660e-3338.32Integrase catalytic domain-containing protein n=11... [more]
A0A6H5J8P7_9PHAE1.660e-3338.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCT3_9PHAE1.670e-3338.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.390e-3338.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12437contigH-elongata_contig12437:3257..3748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.4
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog4081.Solyc11g062200.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.2574017-CDS-H-elongata_contig12437:3256..37481622929732.2574017-CDS-H-elongata_contig12437:3256..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12437 3257..3748 -
1691679136.6258857-CDS-H-elongata_contig12437:3256..37481691679136.6258857-CDS-H-elongata_contig12437:3256..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12437 3257..3748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12437.1826.1prot_H-elongata_contig12437.1826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12437 3257..3748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12437.1826.1

>prot_H-elongata_contig12437.1826.1 ID=prot_H-elongata_contig12437.1826.1|Name=mRNA_H-elongata_contig12437.1826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
CDVCAVGKSHPLNHPKTANHKGNQIFQLIFVDLMEPITPEALGGYKYVRK
ISDEHTKWTEIHLLKSKGDALSSFQLFMQSVVIASSFRVERLRADKSGEY
ISNEYKIFCLQTGVSLEYASINIPQQIGMSESVGRTLPAMVRCLLTDSGL
TRFLWAELMFTAAF
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mRNA from alignment at H-elongata_contig12437:3257..3748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12437.1826.1 ID=mRNA_H-elongata_contig12437.1826.1|Name=mRNA_H-elongata_contig12437.1826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig12437:3257..3748- (Himanthalia elongata Himel1 dioecious)
TGTGACGTGTGTGCCGTGGGAAAAAGCCACCCGTTGAACCACCCGAAGAC GGCCAATCACAAAGGTAACCAAATTTTCCAGCTGATATTCGTCGACCTGA TGGAACCCATAACACCGGAGGCGCTCGGAGGCTACAAGTATGTCAGAAAG ATCTCCGACGAACACACGAAATGGACGGAGATTCATCTGCTGAAGTCCAA GGGCGACGCTCTTAGCTCGTTTCAGTTGTTTATGCAATCGGTAGTGATCG CTAGCAGTTTTCGTGTCGAGCGCCTAAGAGCAGACAAAAGTGGCGAGTAC ATCAGCAACGAGTACAAGATCTTTTGCCTTCAGACGGGAGTGTCACTCGA GTACGCCAGTATCAATATCCCTCAGCAAATCGGTATGTCCGAGAGCGTTG GACGGACTCTCCCAGCCATGGTCCGATGCTTGCTCACCGACAGCGGGCTA ACGCGGTTTCTCTGGGCGGAGTTGATGTTTACGGCAGCGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig12437:3257..3748-

>mRNA_H-elongata_contig12437.1826.1 ID=mRNA_H-elongata_contig12437.1826.1|Name=mRNA_H-elongata_contig12437.1826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig12437:3257..3748- (Himanthalia elongata Himel1 dioecious)
TGTGACGTGTGTGCCGTGGGAAAAAGCCACCCGTTGAACCACCCGAAGAC
GGCCAATCACAAAGGTAACCAAATTTTCCAGCTGATATTCGTCGACCTGA
TGGAACCCATAACACCGGAGGCGCTCGGAGGCTACAAGTATGTCAGAAAG
ATCTCCGACGAACACACGAAATGGACGGAGATTCATCTGCTGAAGTCCAA
GGGCGACGCTCTTAGCTCGTTTCAGTTGTTTATGCAATCGGTAGTGATCG
CTAGCAGTTTTCGTGTCGAGCGCCTAAGAGCAGACAAAAGTGGCGAGTAC
ATCAGCAACGAGTACAAGATCTTTTGCCTTCAGACGGGAGTGTCACTCGA
GTACGCCAGTATCAATATCCCTCAGCAAATCGGTATGTCCGAGAGCGTTG
GACGGACTCTCCCAGCCATGGTCCGATGCTTGCTCACCGACAGCGGGCTA
ACGCGGTTTCTCTGGGCGGAGTTGATGTTTACGGCAGCGTTTTGTGACGT
GTGTGCCGTGGGAAAAAGCCACCCGTTGAACCACCCGAAGACGGCCAATC
ACAAAGGTAACCAAATTTTCCAGCTGATATTCGTCGACCTGATGGAACCC
ATAACACCGGAGGCGCTCGGAGGCTACAAGTATGTCAGAAAGATCTCCGA
CGAACACACGAAATGGACGGAGATTCATCTGCTGAAGTCCAAGGGCGACG
CTCTTAGCTCGTTTCAGTTGTTTATGCAATCGGTAGTGATCGCTAGCAGT
TTTCGTGTCGAGCGCCTAAGAGCAGACAAAAGTGGCGAGTACATCAGCAA
CGAGTACAAGATCTTTTGCCTTCAGACGGGAGTGTCACTCGAGTACGCCA
GTATCAATATCCCTCAGCAAATCGGTATGTCCGAGAGCGTTGGACGGACT
CTCCCAGCCATGGTCCGATGCTTGCTCACCGACAGCGGGCTAACGCGGTT
TCTCTGGGCGGAGTTGATGTTTACGGCAGCGTTT
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