mRNA_H-elongata_contig124036.1807.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124036.1807.1
Unique NamemRNA_H-elongata_contig124036.1807.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A6H5L488_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L488_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.180e-31
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    4 FLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
            F  P++IRKAF DAGVDVDSPLPITTTCGSGVTAA LTLALE+ GRKAE +P+YDGSWSEWG++ DLP++ G D
Sbjct:  313 FRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAELSPVYDGSWSEWGSRADLPKSVGAD 386          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A836CBP8_9STRA (Rhodanese-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-22
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRAT 216
            RF   ++IR+ F  AG+DVDSP P+ T+CGSGVTAA LT+AL + GR    +P+YDGSWSEWG ++DLP+ T
Sbjct:  236 RFKSSEEIREVFQSAGIDVDSPDPLITSCGSGVTAAVLTMALHLAGRDCTTSPVYDGSWSEWGGRDDLPKET 307          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A7S4M6T4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M6T4_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-20
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    4 FLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
             LPPD +  AF  AGVD  +P P+ T+CGSGVTA+ L L L+ +GR+ +   LYDG+WSEWG +EDLP ATG +
Sbjct:   36 MLPPDGLLAAFKAAGVDPSAPTPLITSCGSGVTASVLMLGLDQLGRQ-DGVALYDGAWSEWGGREDLPLATGPE 108          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A529XHI4_9HYPH (Sulfurtransferase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A529XHI4_9HYPH)

HSP 1 Score: 84.3 bits (207), Expect = 1.980e-19
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 FLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
             LP D++RK   DAG+D+  P  + T+CGSG+TAAA+TLALE +G    R  LYDGSW+EWG   D P  TGK+
Sbjct:   44 LLPKDRLRKVIEDAGIDLSKP--VVTSCGSGITAAAITLALETLGHTDNR--LYDGSWTEWGGLSDTPVVTGKE 113          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A0Q8B8U9_9HYPH (3-mercaptopyruvate sulfurtransferase n=1 Tax=Mesorhizobium sp. Root157 TaxID=1736477 RepID=A0A0Q8B8U9_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 3.260e-19
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
            + LP  ++RK F DAGVD+  P  I T+CGSGVTAAA+TLALE +G    R  LYDGSW+EWG   D P ATGKD
Sbjct:  213 QLLPKARLRKIFEDAGVDLGKP--IVTSCGSGVTAAAITLALETLGHSENR--LYDGSWTEWGGLPDTPVATGKD 283          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: I5C0L8_9HYPH (Rhodanese domain-containing protein n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=I5C0L8_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 3.300e-19
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
            R L P+ +R  F  AG+D+D P  + T+CGSGVTAA +TLALE VG    R  LYDGSWSEWG +ED P ATG++
Sbjct:  213 RLLAPEDLRALFAQAGLDLDRP--VVTSCGSGVTAAVITLALETVGHTNNR--LYDGSWSEWGGREDTPVATGRE 283          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A2D4BSD6_PYTIN (Sulfurtransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSD6_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 3.450e-19
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGK 222
            RF    +I++AF DAGV  DS  PI TTCGSGVTA+ LT AL  +G+   + P+YDGSWSEWG ++DLP A  K
Sbjct:  672 RFRGSTEIKQAFQDAGVKTDSVSPIITTCGSGVTASVLTFALHTLGKPLSKAPVYDGSWSEWGLRDDLPIAKDK 745          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A2D4BM81_PYTIN (Sulfurtransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM81_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 3.450e-19
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGK 222
            RF    +I++AF DAGV  DS  PI TTCGSGVTA+ LT AL  +G+   + P+YDGSWSEWG ++DLP A  K
Sbjct:  680 RFRGSTEIKQAFQDAGVKTDSVSPIITTCGSGVTASVLTFALHTLGKPLNKAPVYDGSWSEWGLRDDLPIAKDK 753          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: UPI00165D18B7 (3-mercaptopyruvate sulfurtransferase n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165D18B7)

HSP 1 Score: 86.7 bits (213), Expect = 8.540e-19
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGK 222
            R LPPD++R AF  AG+D+  P  + T+CGSGVTAA L LALE +G    R  LYDGSW+EWG + D P ATGK
Sbjct:  210 RLLPPDELRAAFETAGIDLTKP--VVTSCGSGVTAAVLVLALETLGHADTR--LYDGSWTEWGGRPDTPVATGK 279          
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Match: A0A531KR77_9HYPH (Sulfurtransferase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A531KR77_9HYPH)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 FLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAERTPLYDGSWSEWGAKEDLPRATGKD 225
             L  D++RK   DAG+D+  P  + T+CGSGVTAAA+TLALE +G    R  LYDGSW+EWG   D P  TGKD
Sbjct:   51 LLTKDRLRKVIEDAGIDLSKP--VVTSCGSGVTAAAITLALETLGHTDNR--LYDGSWTEWGGLGDTPVVTGKD 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124036.1807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L488_9PHAE2.180e-3175.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBP8_9STRA2.840e-2258.33Rhodanese-like domain-containing protein n=1 Tax=T... [more]
A0A7S4M6T4_9EUKA2.180e-2055.41Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A529XHI4_9HYPH1.980e-1954.05Sulfurtransferase (Fragment) n=1 Tax=Mesorhizobium... [more]
A0A0Q8B8U9_9HYPH3.260e-1960.003-mercaptopyruvate sulfurtransferase n=1 Tax=Mesor... [more]
I5C0L8_9HYPH3.300e-1957.33Rhodanese domain-containing protein n=4 Tax=Phyllo... [more]
A0A2D4BSD6_PYTIN3.450e-1956.76Sulfurtransferase n=1 Tax=Pythium insidiosum TaxID... [more]
A0A2D4BM81_PYTIN3.450e-1956.76Sulfurtransferase n=1 Tax=Pythium insidiosum TaxID... [more]
UPI00165D18B78.540e-1958.113-mercaptopyruvate sulfurtransferase n=1 Tax=Aquib... [more]
A0A531KR77_9HYPH1.370e-1855.41Sulfurtransferase (Fragment) n=1 Tax=Mesorhizobium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124036contigH-elongata_contig124036:1537..1767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7G7N9
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG2897@1,KOG1529@2759
EC2.8.1.1,2.8.1.2
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.1713495-CDS-H-elongata_contig124036:1536..17671622929730.1713495-CDS-H-elongata_contig124036:1536..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124036 1537..1767 -
1691679136.096818-CDS-H-elongata_contig124036:1536..17671691679136.096818-CDS-H-elongata_contig124036:1536..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124036 1537..1767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124036.1807.1prot_H-elongata_contig124036.1807.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124036 1537..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124036.1807.1

>prot_H-elongata_contig124036.1807.1 ID=prot_H-elongata_contig124036.1807.1|Name=mRNA_H-elongata_contig124036.1807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RFLPPDKIRKAFVDAGVDVDSPLPITTTCGSGVTAAALTLALEVVGRKAE
RTPLYDGSWSEWGAKEDLPRATGKDL*
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mRNA from alignment at H-elongata_contig124036:1537..1767-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124036.1807.1 ID=mRNA_H-elongata_contig124036.1807.1|Name=mRNA_H-elongata_contig124036.1807.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig124036:1537..1767- (Himanthalia elongata Himel1 dioecious)
AGGTTTTTGCCCCCAGACAAGATCAGGAAGGCTTTCGTGGATGCGGGCGT GGACGTAGACTCTCCCCTCCCTATCACGACAACCTGCGGCTCTGGCGTCA CCGCGGCCGCTCTCACGCTGGCGCTGGAGGTTGTGGGCAGAAAGGCGGAA CGTACTCCGCTCTATGATGGGTCGTGGTCGGAGTGGGGGGCGAAGGAAGA CCTCCCCCGCGCCACGGGAAAAGATTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig124036:1537..1767-

>mRNA_H-elongata_contig124036.1807.1 ID=mRNA_H-elongata_contig124036.1807.1|Name=mRNA_H-elongata_contig124036.1807.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig124036:1537..1767- (Himanthalia elongata Himel1 dioecious)
AGGTTTTTGCCCCCAGACAAGATCAGGAAGGCTTTCGTGGATGCGGGCGT
GGACGTAGACTCTCCCCTCCCTATCACGACAACCTGCGGCTCTGGCGTCA
CCGCGGCCGCTCTCACGCTGGCGCTGGAGGTTGTGGGCAGAAAGGCGGAA
CGTACTCCGCTCTATGATGGGTCGTGGTCGGAGTGGGGGGCGAAGGAAGA
CCTCCCCCGCGCCACGGGAAAAGATTTGTGAAGGTTTTTGCCCCCAGACA
AGATCAGGAAGGCTTTCGTGGATGCGGGCGTGGACGTAGACTCTCCCCTC
CCTATCACGACAACCTGCGGCTCTGGCGTCACCGCGGCCGCTCTCACGCT
GGCGCTGGAGGTTGTGGGCAGAAAGGCGGAACGTACTCCGCTCTATGATG
GGTCGTGGTCGGAGTGGGGGGCGAAGGAAGACCTCCCCCGCGCCACGGGA
AAAGATTTGTGA
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