mRNA_H-elongata_contig102.181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102.181.1
Unique NamemRNA_H-elongata_contig102.181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.080e-22
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            S S LWKPYKP+ FYY+V+E                         L+++F F +ISEGLAPY S  D W+NR+GH VVV SMY ALL K D+  +    Q  FE +L+  +V+M++  +AE
Sbjct: 1464 STSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAE 1584          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-21
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAEATI 378
            S S LWKPYKP+ FYY+VIE                         L+++F F ++SEGLAPY S  D W++R+GHAVV  SMY ALL K D+ N+    Q  FEV+L++ +  MI+  + E  +
Sbjct: 1919 STSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVV 2042          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.510e-19
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            S S LWKPYKP+ FYY+VIE                         LM++F F ++SEGLAP+ S  DAW+NR GH VV  SMY ALL K D+  +    Q  +E++L++ +  MI+  + E
Sbjct: 1108 STSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTE 1228          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.660e-19
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAEA 372
            S S LWKPY+P+ FYY+V E                         LM++F F I+SE L+PY S  D WVNR+GH VV  SM+ ALL K D+ ++    Q  FE +L++ +V M++  + EA
Sbjct:  550 STSGLWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEA 671          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.250e-19
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            S S LW+PYKP+ FYY+VIE                         LM++F F ++SE ++PY S  + WVNR+GH VV  SMY ALL K D+ ++    Q+ FE +L++++  MI+  + E
Sbjct: 1279 STSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1399          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.480e-18
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            S S LW+PYKP+ FYY+VIE                         LM++F F ++SE ++PY S  + WVNR+GH VV  S+Y ALL K D+ ++    Q+ FE +L++++  MI+  + E
Sbjct: 1338 STSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1458          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.570e-17
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   13 SSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMI 351
            + LWKPY+P+ FYY+VIE                        AL+++ VF +ISE LAPY S  D W+ R+GHAVV  SMY ALL K D+ ++    Q  FE +L++ +V M+
Sbjct:  831 ADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMV 943          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.420e-17
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 MGSISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            + SIS+LW+PY+P+ +YY+VIE                         L+++ VF ++SE L PY    D WV+R+ HAVV  S+Y ALL K D+ N+    Q  FE +L++ +  MI+  + E
Sbjct:  867 VASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVE 989          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.660e-17
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 MGSISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            + SIS+LW+PY+P+ +YY+VIE                         L+++ VF ++SE L PY    D WV+R+ HAVV  S+Y ALL K D+ N+    Q  FE +L++ +  MI+  + E
Sbjct: 2605 VASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVE 2727          
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-15
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369
            SIS LW+PY+P RFYY+V+E                         L+ +F FF I E ++PY+S  D W++R GH +V FSM+  LL K D+ ++    Q  F  +L++ +VLM++  + E
Sbjct:  895 SISGLWEPYRPERFYYEVVECGRRVMLTGVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLAIVVE 1015          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LSC0_ECTSI3.080e-2242.15Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G5Y7_ECTSI2.000e-2141.13Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G301_ECTSI1.510e-1940.50Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LH65_ECTSI2.660e-1939.34Polymorphic outer membrane protein G/I family prot... [more]
D7G2X5_ECTSI5.250e-1938.02Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE2.480e-1837.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Z8_ECTSI1.570e-1740.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHH1_ECTSI5.420e-1735.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI5.660e-1735.77LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX12_9PHAE2.250e-1535.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102contigH-elongata_contig102:26574..26954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue5.9e-19
Seed eggNOG ortholog2880.D8LSC0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.975652-CDS-H-elongata_contig102:26573..269541622929559.975652-CDS-H-elongata_contig102:26573..26954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 26574..26954 +
1691679070.2993808-CDS-H-elongata_contig102:26573..269541691679070.2993808-CDS-H-elongata_contig102:26573..26954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 26574..26954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102.181.1prot_H-elongata_contig102.181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102 26574..26954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102.181.1

>prot_H-elongata_contig102.181.1 ID=prot_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MGSISSLWKPYKPTRFYYKVIESSRRMMLIGVVVVMQDDSATQIAAALML
SFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHL
IQNAFEVMLISIYVLMIIFEIAEATIK
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mRNA from alignment at H-elongata_contig102:26574..26954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102.181.1 ID=mRNA_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig102:26574..26954+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAATCTCGAGCCTCTGGAAACCATACAAGCCAACTCGTTTTTA TTACAAAGTCATCGAGAGCAGTCGGCGAATGATGCTCATAGGCGTGGTGG TGGTTATGCAAGACGATTCTGCCACCCAGATTGCGGCGGCTCTTATGCTT TCATTTGTCTTCTTTATCATATCGGAAGGGTTGGCACCGTACGAGTCGCA CGTGGACGCCTGGGTGAACCGATTGGGGCATGCTGTTGTGGTTTTCAGTA TGTATTATGCATTGTTGTCAAAGTTTGATATTTTAAACGATTCTCACCTC ATTCAGAACGCTTTTGAGGTTATGCTGATATCTATTTATGTGCTTATGAT TATTTTTGAAATTGCTGAGGCGACTATAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig102:26574..26954+

>mRNA_H-elongata_contig102.181.1 ID=mRNA_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig102:26574..26954+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTCAATCTCGAGCCTCTGGAAACCATACAAGCCAACTCGTTTTTA
TTACAAAGTCATCGAGAGCAGTCGGCGAATGATGCTCATAGGCGTGGTGG
TGGTTATGCAAGACGATTCTGCCACCCAGATTGCGGCGGCTCTTATGCTT
TCATTTGTCTTCTTTATCATATCGGAAGGGTTGGCACCGTACGAGTCGCA
CGTGGACGCCTGGGTGAACCGATTGGGGCATGCTGTTGTGGTTTTCAGTA
TGTATTATGCATTGTTGTCAAAGTTTGATATTTTAAACGATTCTCACCTC
ATTCAGAACGCTTTTGAGGTTATGCTGATATCTATTTATGTGCTTATGAT
TATTTTTGAAATTGCTGAGGCGACTATAAAGATGGGGTCAATCTCGAGCC
TCTGGAAACCATACAAGCCAACTCGTTTTTATTACAAAGTCATCGAGAGC
AGTCGGCGAATGATGCTCATAGGCGTGGTGGTGGTTATGCAAGACGATTC
TGCCACCCAGATTGCGGCGGCTCTTATGCTTTCATTTGTCTTCTTTATCA
TATCGGAAGGGTTGGCACCGTACGAGTCGCACGTGGACGCCTGGGTGAAC
CGATTGGGGCATGCTGTTGTGGTTTTCAGTATGTATTATGCATTGTTGTC
AAAGTTTGATATTTTAAACGATTCTCACCTCATTCAGAACGCTTTTGAGG
TTATGCTGATATCTATTTATGTGCTTATGATTATTTTTGAAATTGCTGAG
GCGACTATAAAG
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