mRNA_H-elongata_contig123966.1802.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123966.1802.1
Unique NamemRNA_H-elongata_contig123966.1802.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: D7FPY9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY9_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.690e-56
Identity = 98/144 (68.06%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 QPLVDLIDPQCVIGKRFYRDSCVRRDGSFVTDTGSILASTVRDAAGLQPRRGMRNAGADLSPDSLKDLRVVGSEHFPLRTVLVDNQPKTVIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHGAGISTAG 432
            +PL+DLID +CVIGKRFYRDSCVRRDG+   DTG     T R A G+ P           S +S+KDL+VVGSEHFPLRTVLVDNQP+TV+QQANVLPV+SWFP DTEDRQLLDLLPVLLALTSC DVRS+L LR G G+   G
Sbjct:  382 EPLIDLIDSRCVIGKRFYRDSCVRRDGAAPPDTGR----TARGATGV-PTATAEAGAPPKSSESVKDLQVVGSEHFPLRTVLVDNQPRTVVQQANVLPVKSWFPRDTEDRQLLDLLPVLLALTSCQDVRSVLSLRPGVGVGGGG 520          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A6H5JWM9_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM9_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.650e-54
Identity = 98/144 (68.06%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 QPLVDLIDPQCVIGKRFYRDSCVRRDGSFVTDTGSILASTVRDAAGLQPRRGMRNAGADLSPDSLKDLRVVGSEHFPLRTVLVDNQPKTVIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHGAGISTAG 432
            +PL+DLID +CVIGKRFYRDSCVRRDG+   DTG     T R A G+ P           S +S+KDL+VVGSEHFPLRTVLVDNQP+TV+QQANVLPV+SWFP DTEDRQLLDLLPVLLALTSC DVRS+L LR G G+   G
Sbjct:  678 EPLIDLIDSRCVIGKRFYRDSCVRRDGAAPPDTGR----TARGATGV-PVATAEAGAPPKSSESVKDLQVVGSEHFPLRTVLVDNQPRTVVQQANVLPVKSWFPRDTEDRQLLDLLPVLLALTSCQDVRSVLSLRPGVGVGGGG 816          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: M2VTB3_GALSU (CTD small phosphatase like isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTB3_GALSU)

HSP 1 Score: 61.2 bits (147), Expect = 4.270e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  151 RGMRNAGADLSPDSLKDLRVVGSEHFPLRTVLVDNQPKTV-IQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLR 405
            R  R++   +  + LKDLRV+G +    + V++DN P+   +Q  N +P+ +W   D+EDR+LLDLLP L  L++C DVR  L  R
Sbjct:  373 RAFRDSCVFIEGNFLKDLRVLGRDLS--KCVILDNSPQAFGLQVENGIPITTWVD-DSEDRELLDLLPFLKQLSNCEDVRPFLSKR 455          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A1L0BKV1_9ASCO (CIC11C00000003019 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0BKV1_9ASCO)

HSP 1 Score: 55.1 bits (131), Expect = 5.370e-6
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  193 LKDL-RVVGSEHFPLRTVLVDNQPKT-VIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHG 411
            +KDL + V  E      V++DN P +  +Q+ N + +  W  +D  DR LL+LLP+L +L+ C DVR I+GLR+G
Sbjct:  281 IKDLSQFVAKEEDLKNVVILDNSPVSYALQEHNGVMIEGWI-NDQNDRDLLNLLPMLYSLSLCIDVRFIIGLRNG 354          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A2A9M4H7_9APIC (Dullard family phosphatase domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M4H7_9APIC)

HSP 1 Score: 55.1 bits (131), Expect = 5.930e-6
Identity = 42/107 (39.25%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  112 ASTVRDAAGLQP-------RRGMRNAGADLSPDSLKDLRVVGSEHFPLRTVLVDNQPKTVIQ-QANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRH 408
            A+ + D   LQP       R   R  G +L     KDL+ V S+    RTVL+D+ P   +    N +P+  W      D  LLDLLP+LLAL S  DVR++L LRH
Sbjct:  204 ANAILDNLDLQPYVDRCYTREDCRLVGPNLYA---KDLQKVCSDLS--RTVLIDDSPVAALYFPDNYIPIEGWCG-SAADTALLDLLPLLLALRSVRDVRTVLQLRH 304          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: C4Y807_CLAL4 (FCP1 homology domain-containing protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y807_CLAL4)

HSP 1 Score: 54.7 bits (130), Expect = 7.230e-6
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  193 LKDLRVVGSEHFPLRTVLV-DNQPKT-VIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHG 411
            +KDL    S+   L+ V++ DN P +    + N + +  W  +D  DR LL+LLP+L AL+ C DVR ILGLR G
Sbjct:  273 IKDLSKFFSKDDDLKNVIILDNSPVSYAFHENNAVMIEGWI-NDQSDRDLLNLLPMLTALSLCIDVRFILGLRSG 346          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A0G4FC44_VITBC (FCP1 homology domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FC44_VITBC)

HSP 1 Score: 54.3 bits (129), Expect = 1.080e-5
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  193 LKDLRVVGSEHFPLRTVLVDNQPKTVIQ-QANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLR 405
            +KDLR+V   H   R +LVD+ P    +   N LP++ W+    +DR LLDL+P+LLA+    DVR IL LR
Sbjct:  238 VKDLRIV--RHELSRVILVDDSPIAYSKFPENALPIQGWWGQ-RDDRALLDLIPLLLAVRKTKDVRHILSLR 306          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A7S3G6I3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6I3_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.560e-5
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  160 RNAGADLSPDSLKDLRVVGSEHFPLR-TVLVDNQPKT-VIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILG 399
            R A   +    +KDL  +G    PL+ T+++DN P + ++Q  N +P+ SWF    +DR+LLDL+PVL  + +  DV  +LG
Sbjct:  191 REACVSVQGSLVKDLSRLGR---PLKDTIILDNSPLSYMLQPENAVPISSWFDQP-DDRELLDLIPVLTTMATVPDVTEVLG 268          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: A0A7S0RHZ6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RHZ6_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 4.980e-5
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  193 LKDLRVVGSEHFPLR-TVLVDNQPKTV-IQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHG 411
            LKDL V+G +   LR T++VDN P+    Q  N +P+ SWF  D+ED +LL+LLP L  L +  DVR  +  + G
Sbjct:  387 LKDLTVLGRD---LRHTIIVDNSPQAFGFQVDNGIPIESWFD-DSEDIELLELLPFLETLVNVDDVRPHIAQQFG 457          
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Match: UPI001C806D8C (Nuclear envelope morphology protein 1 n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C806D8C)

HSP 1 Score: 52.4 bits (124), Expect = 5.110e-5
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  193 LKDLRVVGSEHFPL-----RTVLVDNQPKT-VIQQANVLPVRSWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHG 411
            +KDL    S+ FP        V++DN P +  + + N + +  W  +D +DR LL+LLP+L +L+ C DVR ILGLR G
Sbjct:  445 IKDL----SKFFPKDDELKHVVILDNSPVSYALHEDNAVMIEGWI-NDQDDRDLLNLLPMLHSLSVCIDVRFILGLRSG 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123966.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FPY9_ECTSI1.690e-5668.06FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWM9_9PHAE1.650e-5468.06FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
M2VTB3_GALSU4.270e-840.70CTD small phosphatase like isoform 1 n=1 Tax=Galdi... [more]
A0A1L0BKV1_9ASCO5.370e-641.33CIC11C00000003019 n=2 Tax=[Candida] intermedia Tax... [more]
A0A2A9M4H7_9APIC5.930e-639.25Dullard family phosphatase domain-containing prote... [more]
C4Y807_CLAL47.230e-642.67FCP1 homology domain-containing protein n=2 Tax=Cl... [more]
A0A0G4FC44_VITBC1.080e-544.44FCP1 homology domain-containing protein n=1 Tax=Vi... [more]
A0A7S3G6I3_9EUKA1.560e-537.80Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S0RHZ6_9CHLO4.980e-544.00Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI001C806D8C5.110e-540.51Nuclear envelope morphology protein 1 n=1 Tax=Sche... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123966contigH-elongata_contig123966:226..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.3e-46
Seed eggNOG ortholog2880.D7FPY9
KEGG koko:K15731
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNLI interacting factor
Ec32 orthologEc-01_008140.1
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.9587936-CDS-H-elongata_contig123966:225..6781622929729.9587936-CDS-H-elongata_contig123966:225..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123966 226..678 -
1691679135.998231-CDS-H-elongata_contig123966:225..6781691679135.998231-CDS-H-elongata_contig123966:225..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123966 226..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123966.1802.1prot_H-elongata_contig123966.1802.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123966 226..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123966.1802.1

>prot_H-elongata_contig123966.1802.1 ID=prot_H-elongata_contig123966.1802.1|Name=mRNA_H-elongata_contig123966.1802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
QPLVDLIDPQCVIGKRFYRDSCVRRDGSFVTDTGSILASTVRDAAGLQPR
RGMRNAGADLSPDSLKDLRVVGSEHFPLRTVLVDNQPKTVIQQANVLPVR
SWFPHDTEDRQLLDLLPVLLALTSCHDVRSILGLRHGAGISTAGEFAPLA
*
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mRNA from alignment at H-elongata_contig123966:226..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123966.1802.1 ID=mRNA_H-elongata_contig123966.1802.1|Name=mRNA_H-elongata_contig123966.1802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig123966:226..678- (Himanthalia elongata Himel1 dioecious)
CAGCCCCTCGTAGACCTCATCGACCCGCAATGCGTCATCGGCAAGCGCTT CTACCGTGACAGCTGCGTCCGCCGAGACGGTAGCTTCGTGACCGACACCG GTAGCATCCTAGCGTCAACCGTCCGCGATGCCGCCGGACTGCAGCCGCGA AGAGGAATGCGGAACGCCGGAGCGGACTTATCGCCGGACAGCCTAAAGGA TCTCCGTGTGGTCGGATCGGAGCACTTCCCTCTCCGCACGGTGCTGGTAG ACAATCAGCCCAAGACTGTGATCCAGCAGGCCAACGTTCTCCCGGTCAGG TCGTGGTTCCCCCATGATACGGAAGATCGGCAGCTGCTCGACCTCTTGCC CGTCCTTCTCGCCCTCACCTCTTGTCACGACGTGAGGTCGATCCTGGGGC TGAGGCACGGGGCCGGGATTTCGACCGCCGGGGAATTCGCCCCTTTGGCC TGA
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Coding sequence (CDS) from alignment at H-elongata_contig123966:226..678-

>mRNA_H-elongata_contig123966.1802.1 ID=mRNA_H-elongata_contig123966.1802.1|Name=mRNA_H-elongata_contig123966.1802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig123966:226..678- (Himanthalia elongata Himel1 dioecious)
CAGCCCCTCGTAGACCTCATCGACCCGCAATGCGTCATCGGCAAGCGCTT
CTACCGTGACAGCTGCGTCCGCCGAGACGGTAGCTTCGTGACCGACACCG
GTAGCATCCTAGCGTCAACCGTCCGCGATGCCGCCGGACTGCAGCCGCGA
AGAGGAATGCGGAACGCCGGAGCGGACTTATCGCCGGACAGCCTAAAGGA
TCTCCGTGTGGTCGGATCGGAGCACTTCCCTCTCCGCACGGTGCTGGTAG
ACAATCAGCCCAAGACTGTGATCCAGCAGGCCAACGTTCTCCCGGTCAGG
TCGTGGTTCCCCCATGATACGGAAGATCGGCAGCTGCTCGACCTCTTGCC
CGTCCTTCTCGCCCTCACCTCTTGTCACGACGTGAGGTCGATCCTGGGGC
TGAGGCACGGGGCCGGGATTTCGACCGCCGGGGAATTCGCCCCTTTGGCC
TGACAGCCCCTCGTAGACCTCATCGACCCGCAATGCGTCATCGGCAAGCG
CTTCTACCGTGACAGCTGCGTCCGCCGAGACGGTAGCTTCGTGACCGACA
CCGGTAGCATCCTAGCGTCAACCGTCCGCGATGCCGCCGGACTGCAGCCG
CGAAGAGGAATGCGGAACGCCGGAGCGGACTTATCGCCGGACAGCCTAAA
GGATCTCCGTGTGGTCGGATCGGAGCACTTCCCTCTCCGCACGGTGCTGG
TAGACAATCAGCCCAAGACTGTGATCCAGCAGGCCAACGTTCTCCCGGTC
AGGTCGTGGTTCCCCCATGATACGGAAGATCGGCAGCTGCTCGACCTCTT
GCCCGTCCTTCTCGCCCTCACCTCTTGTCACGACGTGAGGTCGATCCTGG
GGCTGAGGCACGGGGCCGGGATTTCGACCGCCGGGGAATTCGCCCCTTTG
GCCTGA
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