mRNA_H-elongata_contig12391.1799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12391.1799.1
Unique NamemRNA_H-elongata_contig12391.1799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12391.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12391contigH-elongata_contig12391:3090..5530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size362
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12391.1799.1prot_H-elongata_contig12391.1799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12391 3090..5530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.5774052-CDS-H-elongata_contig12391:3089..32481622929729.5774052-CDS-H-elongata_contig12391:3089..3248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 3090..3248 +
1691679135.8040462-CDS-H-elongata_contig12391:3089..32481691679135.8040462-CDS-H-elongata_contig12391:3089..3248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 3090..3248 +
1622929729.589285-CDS-H-elongata_contig12391:4750..48221622929729.589285-CDS-H-elongata_contig12391:4750..4822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 4751..4822 +
1691679135.8192165-CDS-H-elongata_contig12391:4750..48221691679135.8192165-CDS-H-elongata_contig12391:4750..4822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 4751..4822 +
1622929729.6019382-CDS-H-elongata_contig12391:5401..55301622929729.6019382-CDS-H-elongata_contig12391:5401..5530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 5402..5530 +
1691679135.8280258-CDS-H-elongata_contig12391:5401..55301691679135.8280258-CDS-H-elongata_contig12391:5401..5530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12391 5402..5530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12391.1799.1

>prot_H-elongata_contig12391.1799.1 ID=prot_H-elongata_contig12391.1799.1|Name=mRNA_H-elongata_contig12391.1799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MVTLPGPSPDPLGLFDQISPKNLAELAKSHKYLSGELLEIKLGDVRLICR
PVEIETDPRDYLRTTTFYNLVFAVVSEYRLPRRPYPSGPLPEKSILGKTP
SATGATSAAANAPGDGVPEN
back to top

mRNA from alignment at H-elongata_contig12391:3090..5530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12391.1799.1 ID=mRNA_H-elongata_contig12391.1799.1|Name=mRNA_H-elongata_contig12391.1799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2441bp|location=Sequence derived from alignment at H-elongata_contig12391:3090..5530+ (Himanthalia elongata Himel1 dioecious)
ATGGTTACCTTGCCAGGCCCATCACCTGACCCCCTGGGGCTGTTCGACCA
GATCTCGCCCAAGAATCTGGCTGAGCTCGCCAAATCTCATAAATATCTGT
CGGGAGAGCTGCTCGAAATAAAACTGGGAGATGTGCGACTTATCTGCCGA
CCTGTGGAGGTGAGTAAAATGCGTACTGAATGAGGCGTTGGTTGCAACGT
TGGAAAACGTGATAACTTCGATGTGAGAAACCAAACCAAGTAAACACTTA
AATACACGCTTAATACACTTGACAGGTGCGTGCATGTACCCAATCATCTA
CCTGATATCCATCAAACACACACACGCATGCACGGCAGACGGGAGAGCGT
TGGCCTATTAGAGGCAGGGCCGAAGCGGCCGACCGAAGCTATATGGCAAA
CAAGGATGTAGAGAGGGAAGCGCAAGGTATTGACGGTTTAGATACGAAAT
GTAGCGATAGTATGTCTCCTTTGACACGTCTGATCATTAATATCATTAAT
AATAGAGGTGTTTGTAGCAAATATGATTGAATCTCCCATTGGGAGGATCA
ATGCGAGAGTAGGGTAAAAGAGCTAGCATGACAGAACCGGATTGCGCGGT
TATGCGCAATTTAAGAAACACACACACACACACACACACATACATACATA
CATACATACATACATACATAAACACACAGTTTTGTCATGTTTGATCAGGG
TTTTTGTGGCAAACATGATTAATTCCCCATTTGGAAGATCAATGCATGCA
GCCTAGAAGGACAGGCATGACAAGGCCGCATTGCGCGGTTATGTGTAATT
TAATGAATACACAAACAGGGCAACCCATCCAAAACAATCGACGGAGCCAT
TGTCACGAATGGTTGGTTTGGGGTGGATGATTGCGACGGTAGGCGATCGC
AGTGCGAAAGAACATGCTCTGGGGTACACGGGAGTTTGACATGACTTGTT
TTTTATTCTTTGATTGGGTTGTTTTCTGCTCCACGCAAAGAATACGAAAA
GGCGTGCCGCGTAGCAGCTCTTAAACATATTGTAATAAAGTATTCGCTAT
TCTTCCTTTCTTGCTTCACCATCCGCCTTCTAGAATGACCGCGTTGTGCA
TGCGGCGCTATCAAGAGCAACATGCCTCAAGTCCTCTCCCGATCCACCCT
TTATCAGCCCCCTTCCCGCCTGCCACGCGATGATTCTGGTAGTATCACTA
CGGCGCTTGAATGTGCTCTTGAAGGGTCCATTCCAGGGATGCTGCGAGCG
CAGTTGTGCTGATTAAAATAATCCATCGCGAAGTAATTGTCGGAGACGAG
ATCTGGGATATTATTTTTAACCCAGGGAGGAATGCCGTGTAAGCCCGAAG
CGTCCGTAATCGTAGCTTGCTACCGAGGTGCCTCCCTCGTCCCTTAAAAC
AAATAAATGAAGCGCAAGGCCACACCACTAAATTTAGGTTCGATTCCGAG
GTGTAGGCTCTTAGATACCTTTTGCGTCTGAAGGTTTCATGCAGTACTAA
ATCAAATCGTATTGCCTTCCTGACGTCACGATGCGCATATGTCTTCCTTA
AACAGAAGGAATCGATAGGGTGTCATATTTTTACCTTGATACCGCGGGTT
GGTGCCTGTCGATATTCGAGACACGGCGAATGCTCCTGCCTTTGCCGTCT
GGCTTGTACAGATTGAAACCGACCCTAGGGACTACTTGCGGACGACCACG
TTTTATAACCTTGTCTTCGCCGTCGTCTCTGAGGTAAACAATGTGTAGTT
ATACTTGTTGTGCAAGGTGAATCGTTTCGGCGATCGAGCGATGGATCGAT
TTTAAAAAATAGGTTTGGCATGGTTTGTTGGCACATAATCCACCTGTAAA
AGCTCAACGAGAGGCGGGTTACCCGGGACGGCGGAGGATGCTAGTTGGAT
CGATAGATAGATTGCTGTACGGGCGGAGCGTATAGGTGCTTGTTCCGTAC
TTGATTGATCGCTTTGATGCTTTTATGGTGATCCCGATCGGGAGATCTGG
TGAACCGTTATGTTGGCCGATTATTGGATAGATCATATCAGGGGGTGAGA
TTGGTCTTTTTGTTTTCCTTTCGGATCTTGATTCCCCACCGATGAAAGCG
AGCGGCGATATCTACACGATCGATCTACTCATACTCGATGACGCTTTCGA
GCAGTTGGTGTATCATCTCTCCGGAAGAAAACCGCTGAATCAAAACGACC
AAGATCGAGAAAGGAAATATCTCCAATCACATCCTCGAGGTATATTATTC
CAACCCTGTGCCCGTTCCAAATTCACCCTTTACCACCGTTCGATCTGTTC
CTCCTGGATCAGTACCGCCTGCCGCGACGGCCTTACCCGTCCGGCCCCCT
TCCCGAAAAATCAATTTTGGGGAAGACGCCCTCCGCGACGGGAGCGACTT
CAGCGGCTGCGAATGCTCCGGGGGACGGCGTCCCAGAGAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12391:3090..5530+

>mRNA_H-elongata_contig12391.1799.1 ID=mRNA_H-elongata_contig12391.1799.1|Name=mRNA_H-elongata_contig12391.1799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig12391:3090..5530+ (Himanthalia elongata Himel1 dioecious)
ATGGTTACCTTGCCAGGCCCATCACCTGACCCCCTGGGGCTGTTCGACCA
GATCTCGCCCAAGAATCTGGCTGAGCTCGCCAAATCTCATAAATATCTGT
CGGGAGAGCTGCTCGAAATAAAACTGGGAGATGTGCGACTTATCTGCCGA
CCTGTGGAGATGGTTACCTTGCCAGGCCCATCACCTGACCCCCTGGGGCT
GTTCGACCAGATCTCGCCCAAGAATCTGGCTGAGCTCGCCAAATCTCATA
AATATCTGTCGGGAGAGCTGCTCGAAATAAAACTGGGAGATGTGCGACTT
ATCTGCCGACCTGTGGAGATTGAAACCGACCCTAGGGACTACTTGCGGAC
GACCACGTTTTATAACCTTGTCTTCGCCGTCGTCTCTGAGATTGAAACCG
ACCCTAGGGACTACTTGCGGACGACCACGTTTTATAACCTTGTCTTCGCC
GTCGTCTCTGAGTACCGCCTGCCGCGACGGCCTTACCCGTCCGGCCCCCT
TCCCGAAAAATCAATTTTGGGGAAGACGCCCTCCGCGACGGGAGCGACTT
CAGCGGCTGCGAATGCTCCGGGGGACGGCGTCCCAGAGAACTACCGCCTG
CCGCGACGGCCTTACCCGTCCGGCCCCCTTCCCGAAAAATCAATTTTGGG
GAAGACGCCCTCCGCGACGGGAGCGACTTCAGCGGCTGCGAATGCTCCGG
GGGACGGCGTCCCAGAGAAC
back to top