mRNA_H-elongata_contig1233.1762.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1233.1762.1 vs. uniprot
Match: D7FV95_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV95_ECTSI) HSP 1 Score: 305 bits (780), Expect = 9.990e-92 Identity = 172/359 (47.91%), Postives = 240/359 (66.85%), Query Frame = 1
Query: 445 LPELAGEQEGGEGAQDLEVRRESPFPSSSERGALEAAAASQKALVAGKRGLIIDVEVKELDDESPEFDPDLMIHFVTEVGKNLASVTGKTTIMLRGDHLVTRATETLHRENIQAVEAGFDPREDVSFCSMRTRNLDDEGEPDSMDEFATRTARKISDDERLVMIIGPRSNADVIVMREVVKAARGRSVVLVNPRMTYMPRETSEYDTAYLLRQFTVRPVKKDPKKEAKKSPFRITSRQRKQQAIFSELGQEVPKVLLTRAFPDDFKLYVDIDGKGFLLEDTYDEKPHPSMVCLGAQTIIEEAQRRVSMKARMTAATERQREILAMWDEDXXXXXXXXXD---VVPRRLTDEEIDSRLRD 1512
LPEL GE E +RE+PFP+SS+RGALEA++ASQ+AL+AGKRGLIIDVEV+++DD EFD ++ I F T++ K LA+V+G+ ++LRG HL +ATE L + N + E G +PR D+SFCS + N DDE + SM +FA+ T +++ER+ +++ PR DV V+RE++ A+GR VVL+ PRM YMP ET ++T Y L+Q+ V+PV +PKK K R+T + QQ I+SELGQ +P+VL+TRAFP DFKLY+DIDGKGF LE TYD KP P++V AQ I E Q+RV+++ + A + E +D D + VVP T++EI++RLRD
Sbjct: 56 LPELEGE--------GPETKRENPFPTSSDRGALEASSASQQALLAGKRGLIIDVEVRQMDDTHAEFDEEMQIDFATDISKALATVSGRVKVLLRGIHLAEKATEMLQKANTKGEEEGIEPRRDISFCSFQMANTDDEDDEKSMRDFAS-TLGLANEEERVFLMVCPRRLVDVTVLREIILVAKGRPVVLITPRMPYMPVETDGFETVYQLKQYNVQPVPTNPKKRIKN--VRLTRLGQNQQTIYSELGQVIPRVLVTRAFPGDFKLYLDIDGKGFQLEKTYDAKPQPAVVSFTAQNKIREVQQRVTLQEKRVVAKDHGVEDDDDFDWDTINDDLEEGEEPFVVPPMPTEDEINARLRD 403 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1233.1762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1233.1762.1 >prot_H-elongata_contig1233.1762.1 ID=prot_H-elongata_contig1233.1762.1|Name=mRNA_H-elongata_contig1233.1762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=481bp MPCRSAIISQDARIMSHGVVACLLVVFASFRRASGWTLNIDVPFQAAMKHback to top mRNA from alignment at H-elongata_contig1233:6373..12259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1233.1762.1 ID=mRNA_H-elongata_contig1233.1762.1|Name=mRNA_H-elongata_contig1233.1762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5887bp|location=Sequence derived from alignment at H-elongata_contig1233:6373..12259+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1233:6373..12259+ >mRNA_H-elongata_contig1233.1762.1 ID=mRNA_H-elongata_contig1233.1762.1|Name=mRNA_H-elongata_contig1233.1762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2886bp|location=Sequence derived from alignment at H-elongata_contig1233:6373..12259+ (Himanthalia elongata Himel1 dioecious)back to top |