mRNA_H-elongata_contig12325.1757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12325.1757.1
Unique NamemRNA_H-elongata_contig12325.1757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Match: D8LLH7_ECTSI (PINc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH7_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.160e-53
Identity = 136/279 (48.75%), Postives = 173/279 (62.01%), Query Frame = 1 
Query:  214 RAGKSCPPPREGKPRSSGDKDDSRGSGGNVGNTPTPSQNLDEDKLAEIMNKINALDLNATTKSTLKKAPGDVAS-------KAYLTREEYKAAETAGNVV-YKGKK--TVDELYAGGKAYNPTTRRWIKVENEKKKAAAESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTAPKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLK---KNEMRGFSAREASRY---LVSLPQTCEGREFTVARFQED 1002
            RAGKSCPPP   K R     D S G+        +P Q  D D++AE+ +++ AL+++A   S   +    VA+       KAYL+ EEYK A  +G +  YKG K  TVD+ YA G AYNPTTRRWIKV  ++KK A E+ P LLA +E++E+  KL T+RSQLLETK E +K +    T +L  PTAP L+ FDTN  +H L    CR++DIA RQ DTSVLIPKAVLTELD LK   ++E    SA++A+RY   LV  P    GREF V R QED
Sbjct:  278 RAGKSCPPPSAEKRR-----DASAGARATTA-LMSPEQERD-DEIAELASQLTALEIDAGKGSVDDEGKEKVANGGDAGKGKAYLSLEEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEIKKKK--DTVSLAMPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLE-RGREFPVVRVQED 546
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BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Match: A0A6H5JRN9_9PHAE (PINc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 5.920e-50
Identity = 121/238 (50.84%), Postives = 156/238 (65.55%), Query Frame = 1 
Query:  337 EDKLAEIMNKINALDLNA-----TTKSTLKKAPGDVASK--AYLTREEYKAAETAGNVV-YKGKK--TVDELYAGGKAYNPTTRRWIKVENEKKKAAAESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTAPKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLK---KNEMRGFSAREASRY---LVSLPQTCEGREFTVARFQED 1002
            +D++AE+ +++ AL+L+A       K   K A GD A K  AYL+ +EYK A  +G +  YKG K  TVD+ YA G AYNPTTRRWIKV  ++KK A E+ P LLA +E++E+  KL T+RSQLLETK E +K +    T +L  PTAP L+ FDTN  +H L    CR++DIA RQ DTSVLIPKAVLTELD LK   ++E    SA++A+RY   LV  P    GREF V R Q+D
Sbjct:  549 DDEIAELASQLTALELDAGKGSVADKGKEKVADGDDAGKGKAYLSLKEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEIKKKK--DTVSLAVPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLE-RGREFPVVRVQDD 783
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12325.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH7_ECTSI1.160e-5348.75PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRN9_9PHAE5.920e-5050.84PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12325contigH-elongata_contig12325:1..2287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12325.1757.1prot_H-elongata_contig12325.1757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12325 1..2287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.695693-CDS-H-elongata_contig12325:0..841622929724.695693-CDS-H-elongata_contig12325:0..84Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1..84 -
1691679133.719085-CDS-H-elongata_contig12325:0..841691679133.719085-CDS-H-elongata_contig12325:0..84Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1..84 -
1622929724.7086525-CDS-H-elongata_contig12325:216..4071622929724.7086525-CDS-H-elongata_contig12325:216..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 217..407 -
1691679133.73212-CDS-H-elongata_contig12325:216..4071691679133.73212-CDS-H-elongata_contig12325:216..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 217..407 -
1622929724.7187946-CDS-H-elongata_contig12325:682..7881622929724.7187946-CDS-H-elongata_contig12325:682..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 683..788 -
1691679133.7414885-CDS-H-elongata_contig12325:682..7881691679133.7414885-CDS-H-elongata_contig12325:682..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 683..788 -
1622929724.7330194-CDS-H-elongata_contig12325:1037..11771622929724.7330194-CDS-H-elongata_contig12325:1037..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1038..1177 -
1691679133.7511697-CDS-H-elongata_contig12325:1037..11771691679133.7511697-CDS-H-elongata_contig12325:1037..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1038..1177 -
1622929724.7459378-CDS-H-elongata_contig12325:1596..17231622929724.7459378-CDS-H-elongata_contig12325:1596..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1597..1723 -
1691679133.758876-CDS-H-elongata_contig12325:1596..17231691679133.758876-CDS-H-elongata_contig12325:1596..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1597..1723 -
1622929724.7634327-CDS-H-elongata_contig12325:1933..22871622929724.7634327-CDS-H-elongata_contig12325:1933..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1934..2287 -
1691679133.7666247-CDS-H-elongata_contig12325:1933..22871691679133.7666247-CDS-H-elongata_contig12325:1933..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12325 1934..2287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12325.1757.1

>prot_H-elongata_contig12325.1757.1 ID=prot_H-elongata_contig12325.1757.1|Name=mRNA_H-elongata_contig12325.1757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
RGETRRPSNTSNGFKDSDERARDDSSIRGREGRHDSHRAGRDGTNRSNGR
PRGRRGGKNEEADPESRKWHVRAGKSCPPPREGKPRSSGDKDDSRGSGGN
VGNTPTPSQNLDEDKLAEIMNKINALDLNATTKSTLKKAPGDVASKAYLT
REEYKAAETAGNVVYKGKKTVDELYAGGKAYNPTTRRWIKVENEKKKAAA
ESAPVLLANVEMLENTVKLLTERSQLLETKAEILKDQSTGPTATLGTPTA
PKLIVFDTNCFMHGLGSIKCRIADIAARQPDTSVLIPKAVLTELDGLKKN
EMRGFSAREASRYLVSLPQTCEGREFTVARFQED
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mRNA from alignment at H-elongata_contig12325:1..2287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12325.1757.1 ID=mRNA_H-elongata_contig12325.1757.1|Name=mRNA_H-elongata_contig12325.1757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-elongata_contig12325:1..2287- (Himanthalia elongata Himel1 dioecious)
CGCGGGGAAACACGCCGGCCGTCGAATACAAGTAATGGATTCAAGGACTC
GGATGAGCGAGCACGAGATGACAGTAGTATCCGCGGCCGGGAAGGTAGGC
ACGATTCTCACCGTGCTGGGAGGGATGGAACCAACCGCAGTAACGGTCGT
CCTCGAGGAAGGAGAGGCGGTAAAAACGAGGAAGCGGATCCGGAAAGCCG
CAAGTGGCATGTAAGGGCGGGTAAGTCGTGTCCACCGCCCAGAGAAGGAA
AGCCTCGCTCCTCAGGCGATAAGGATGATAGCCGTGGTTCTGGTGGAAAC
GTTGGCAATACCCCTACACCATCGCAGAATCTAGACGAGGACAAGCTGGC
TGAGGTGAGCATTGTATGTACAAAACGAAATAGCACCGCAACAGTATGAT
CGTCCCTGTGGCAACACGCAGACGCGTTAAATACGATAACGCCGCGTCTA
CACTTACACTCGCCTTACGAGCTTATGGTTTTCATTTGACATAAGTTGCT
TACTTTTGGGTGATGATCTTCAGCCGCATGCGCCCCTCGTTGTTGCGCCT
CCTCTCCCGGCTAGATTATGAACAAGATCAACGCCCTTGATTTAAACGCG
ACGACGAAGAGTACTCTAAAGAAGGCGCCGGGCGATGTCGCCTCTAAAGC
CTACTTAACGCGGGAAGAGTATAAGGCAGCGGAGACAGCAGGTGAGGAGT
GGTCGTTTTGTACGCTTTTCCCAAGGCAAGTGATAATATTCTGTTAATAT
TGTCCCCCAATCTCCTAAATCTGGCGTGTTATAGCGGATAGTGTATTCAC
TAATTTGCGGAATCAATCAAGCGAGAGCTAAATAAAAGGCGCACCCATTG
CCTGACATTCTACGGTGTGCCATGCTCTTACTCATTTCAGCCGGACGTCC
TGAAGAAAGCGCAAAACCTGGCATGCTTGTTACCTACGCTTGGAAAAAAA
TAAATCCATAGCTGAGAACCATGCTCTCGAAGAGGTCGTTTGAAATAATC
GTTATCGGCGGCGCCCAAAGCTCGAGTTTCCGCGTGGCTGCGGCACTAGG
CTCGCAGTTTCTCCCGGGGTGGTTGATGTAACGGAGGTGCCCCCCCCTCA
TGGGTCGCAGGCAACGTCGTGTACAAGGGGAAGAAAACGGTGGACGAACT
GTACGCTGGTGGAAAGGCGTACAACCCCACCACCCGTCGCTGGATCAAGG
TCGAGAACGAGAAAAAGAAGGCCGCGGCGGAATCGGCTCCTGTTTTGCTG
GTGAGGGTGCTAAAATTATGGCTTGTGTTTTATGTCGAAAACGACTAACA
CGGATGCGCTTGTCTTGTCGTGGGGTGTTTTTGAGGGGGCGAAGAAGCCG
GCGGCTATTGTTGAACGATGACACCATTGAGATCGAAAATAGCTTTCAAA
AGCGGCTGGCTGACATTACGCATGCGTTGCATTTCTTTCTTTCGAGCAAA
AGAGGGTTTCGTTTGCCTTGTCCTGACCGCTGAACCTGTTGTGGCGCAGG
CCAATGTAGAGATGCTGGAGAACACGGTCAAACTTCTGACAGAGCGGTCT
CAGCTTCTAGAGACCAAGGCGGAAATACTCAAGGATCAATCCACGGGGCC
AACTGGTGGGTTCTATGCCTCGTATCGCGTGTCCAAGGTGCATCGCGAAA
TGTTTCACGAGCGATGTCACTGATGTAACGTGTGTTCAAAAACGGAGTAC
TCCTTTAATCTGGGCGGCATGTTTTACGGGCTCCTGAATTAGTCGAACAC
ATTCCAGGCCATTCGCCAGTGGTATATTTACCGTGTTGACATGATTAAGT
CGATGCCCGATCTGGGAACTACATATTCTGCTGGAACTTTTATAATCCCG
GAGTCGTTCTTTTCCTATCCCGCGGAACAGCAACGCTCGGAACCCCGACG
GCTCCCAAGCTGATCGTCTTCGACACGAACTGCTTCATGCACGGTCTTGG
CAGCATCAAGTGCCGCATAGCTGATATTGCCGCCAGGCAACCCGACACGT
CGGTTCTGATTCCGAAGGCCGTGTTGACAGAGCTGGACGGACTGAAAAAG
AACGAGATGCGTGGCTTCAGCGTGAGTTTACCGCGACATATACAAGATGA
CGGTCGAACTTCATGCCTCACCCTGTCGAAGGGAGACCTCGTGCATTATG
TAGGGGCTCTAACATGTAACTTGTGTATTTGGTCCCCTCTGTTACGTCAC
CAGGCTCGAGAAGCCTCGCGATACCTCGTGTCACTGCCTCAAACGTGCGA
AGGGAGGGAATTTACGGTTGCCCGTTTCCAGGAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig12325:1..2287-

>mRNA_H-elongata_contig12325.1757.1 ID=mRNA_H-elongata_contig12325.1757.1|Name=mRNA_H-elongata_contig12325.1757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at H-elongata_contig12325:1..2287- (Himanthalia elongata Himel1 dioecious)
CGCGGGGAAACACGCCGGCCGTCGAATACAAGTAATGGATTCAAGGACTC
GGATGAGCGAGCACGAGATGACAGTAGTATCCGCGGCCGGGAAGGTAGGC
ACGATTCTCACCGTGCTGGGAGGGATGGAACCAACCGCAGTAACGGTCGT
CCTCGAGGAAGGAGAGGCGGTAAAAACGAGGAAGCGGATCCGGAAAGCCG
CAAGTGGCATGTAAGGGCGGGTAAGTCGTGTCCACCGCCCAGAGAAGGAA
AGCCTCGCTCCTCAGGCGATAAGGATGATAGCCGTGGTTCTGGTGGAAAC
GTTGGCAATACCCCTACACCATCGCAGAATCTAGACGAGGACAAGCTGGC
TGAGCGCGGGGAAACACGCCGGCCGTCGAATACAAGTAATGGATTCAAGG
ACTCGGATGAGCGAGCACGAGATGACAGTAGTATCCGCGGCCGGGAAGGT
AGGCACGATTCTCACCGTGCTGGGAGGGATGGAACCAACCGCAGTAACGG
TCGTCCTCGAGGAAGGAGAGGCGGTAAAAACGAGGAAGCGGATCCGGAAA
GCCGCAAGTGGCATGTAAGGGCGGGTAAGTCGTGTCCACCGCCCAGAGAA
GGAAAGCCTCGCTCCTCAGGCGATAAGGATGATAGCCGTGGTTCTGGTGG
AAACGTTGGCAATACCCCTACACCATCGCAGAATCTAGACGAGGACAAGC
TGGCTGAGATTATGAACAAGATCAACGCCCTTGATTTAAACGCGACGACG
AAGAGTACTCTAAAGAAGGCGCCGGGCGATGTCGCCTCTAAAGCCTACTT
AACGCGGGAAGAGTATAAGGCAGCGGAGACAGCAGATTATGAACAAGATC
AACGCCCTTGATTTAAACGCGACGACGAAGAGTACTCTAAAGAAGGCGCC
GGGCGATGTCGCCTCTAAAGCCTACTTAACGCGGGAAGAGTATAAGGCAG
CGGAGACAGCAGGCAACGTCGTGTACAAGGGGAAGAAAACGGTGGACGAA
CTGTACGCTGGTGGAAAGGCGTACAACCCCACCACCCGTCGCTGGATCAA
GGTCGAGAACGAGAAAAAGAAGGCCGCGGCGGAATCGGCTCCTGTTTTGC
TGGCAACGTCGTGTACAAGGGGAAGAAAACGGTGGACGAACTGTACGCTG
GTGGAAAGGCGTACAACCCCACCACCCGTCGCTGGATCAAGGTCGAGAAC
GAGAAAAAGAAGGCCGCGGCGGAATCGGCTCCTGTTTTGCTGGCCAATGT
AGAGATGCTGGAGAACACGGTCAAACTTCTGACAGAGCGGTCTCAGCTTC
TAGAGACCAAGGCGGAAATACTCAAGGATCAATCCACGGGGCCAACTGGC
CAATGTAGAGATGCTGGAGAACACGGTCAAACTTCTGACAGAGCGGTCTC
AGCTTCTAGAGACCAAGGCGGAAATACTCAAGGATCAATCCACGGGGCCA
ACTGCAACGCTCGGAACCCCGACGGCTCCCAAGCTGATCGTCTTCGACAC
GAACTGCTTCATGCACGGTCTTGGCAGCATCAAGTGCCGCATAGCTGATA
TTGCCGCCAGGCAACCCGACACGTCGGTTCTGATTCCGAAGGCCGTGTTG
ACAGAGCTGGACGGACTGAAAAAGAACGAGATGCGTGGCTTCAGCCAACG
CTCGGAACCCCGACGGCTCCCAAGCTGATCGTCTTCGACACGAACTGCTT
CATGCACGGTCTTGGCAGCATCAAGTGCCGCATAGCTGATATTGCCGCCA
GGCAACCCGACACGTCGGTTCTGATTCCGAAGGCCGTGTTGACAGAGCTG
GACGGACTGAAAAAGAACGAGATGCGTGGCTTCAGCGCTCGAGAAGCCTC
GCGATACCTCGTGTCACTGCCTCAAACGTGCGAAGGGAGGGAATTTACGG
TTGCCCGTTTCCAGGAGGATGCTCGAGAAGCCTCGCGATACCTCGTGTCA
CTGCCTCAAACGTGCGAAGGGAGGGAATTTACGGTTGCCCGTTTCCAGGA
GGAT
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