mRNA_H-elongata_contig123227.1755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig123227.1755.1
Unique NamemRNA_H-elongata_contig123227.1755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A6H5JS50_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS50_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.780e-40
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    7 RAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRR--DWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            RA ++RG+LVL+LGASGGVGLAAVQLAKAAGATV+AAAST EKLQ C+DSGAD LLNY  R+G GN G +R  DWR ALKRLT GRG+DVVLDNVGG+DCE
Sbjct:  135 RANLRRGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTREKLQACRDSGADFLLNY--RQGNGNGGDQRGGDWRGALKRLTGGRGVDVVLDNVGGADCE 233          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A841MWY0_9BACT (NADPH2:quinone reductase n=1 Tax=Algoriphagus iocasae TaxID=1836499 RepID=A0A841MWY0_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.530e-24
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGG--SDCEVR 309
            ++RA +++G+ +L+LGASGG+GLAAV+L K  GA V+AAAS+ EKL+ CQD GADLL+NY             D +S +K LT+G+G+DV+LD VGG  +D  +R
Sbjct:  132 KDRANIQKGETLLVLGASGGIGLAAVELGKIMGAKVIAAASSSEKLELCQDRGADLLINYE----------EEDLKSRIKELTDGKGVDVILDPVGGKFTDAAIR 226          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A349YB53_9PROT (NADPH:quinone oxidoreductase n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A349YB53_9PROT)

HSP 1 Score: 100 bits (250), Expect = 1.930e-23
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RA ++ G+ +LILGASGGVGLAA+QL KA GATV+AAAS  EKL  CQ++GAD ++NY           + D R ++K +T+GRG+DV+ D VGGS  E
Sbjct:  132 KDRAHLREGETLLILGASGGVGLAAIQLGKAMGATVIAAASNPEKLSACQENGADYVINY----------AQDDLRQSVKEITKGRGVDVIYDPVGGSFSE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: UPI001FF40FD1 (NADPH:quinone oxidoreductase family protein n=1 Tax=Muricauda sp. SCSIO 64092 TaxID=2908842 RepID=UPI001FF40FD1)

HSP 1 Score: 100 bits (249), Expect = 2.620e-23
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++R ++K+G+ +L+LGASGGVGLAAV+L K  GATV+AAAS  EKL+ C+  GAD+ LNY             D +SA+K LTEG+G+DVV D VGGS  E
Sbjct:  132 RDRGRLKKGETLLVLGASGGVGLAAVELGKLMGATVIAAASNNEKLELCKKYGADITLNY----------ATMDLKSAVKELTEGKGVDVVYDPVGGSFSE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A2T5J3G1_9GAMM (NADPH2:quinone reductase n=1 Tax=Agitococcus lubricus TaxID=1077255 RepID=A0A2T5J3G1_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 3.720e-23
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RA+++ G+ VL+LGA+GGVGLAAVQLAK  GA V+AAAST EKL  CQ  GAD ++NY             +WR  +K LT+G+G+DVV D VGG   E
Sbjct:  132 KDRAQLQAGETVLVLGAAGGVGLAAVQLAKVMGAKVIAAASTAEKLAVCQQYGADAVVNYT----------EANWREQIKTLTDGKGVDVVYDAVGGDYAE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A3D0ETH9_9PROT (NADPH:quinone oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3D0ETH9_9PROT)

HSP 1 Score: 100 bits (248), Expect = 3.770e-23
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RA ++ G+ +L+LGASGGVG+AA+QL KA GATV+AAAS  EKL  C+ SGAD L+NY+            D R ++K +T+GRG+DVV D VGGS  E
Sbjct:  132 KDRALLRAGETLLVLGASGGVGIAAIQLGKALGATVIAAASNAEKLSVCKQSGADHLINYS----------ESDLRQSVKEITQGRGVDVVYDPVGGSFSE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A318E2Q6_9GAMM (NADPH:quinone reductase-like Zn-dependent oxidoreductase n=1 Tax=Sinimarinibacterium flocculans TaxID=985250 RepID=A0A318E2Q6_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 7.380e-23
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RA +K G+++L+LGASGGVGLAA+++ KA GA V+AAAST EKL  C+D GAD L+NYN            D ++ LK LT G+G+DVV D VGG   E
Sbjct:  132 KDRAALKSGEILLVLGASGGVGLAAIEIGKALGARVIAAASTAEKLAVCKDHGADELINYNSE----------DLKARLKELTGGKGVDVVYDPVGGDYSE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: UPI001991BD88 (NADPH:quinone oxidoreductase family protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001991BD88)

HSP 1 Score: 99.0 bits (245), Expect = 1.020e-22
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RA++K G+ +LILGA+GGVGLAA+QL KA GA V+AAAS+ EKL+ C+D+GAD L+NY          G  D R+ +K +T G+G+DVV D VGG   E
Sbjct:  132 KDRAEIKAGETMLILGAAGGVGLAAIQLGKAMGARVIAAASSDEKLKACRDNGADDLINY----------GSEDLRARVKAITAGKGVDVVYDPVGGPYSE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: UPI001C441DB0 (NADPH:quinone oxidoreductase family protein n=1 Tax=Duganella sp. sic0402 TaxID=2854786 RepID=UPI001C441DB0)

HSP 1 Score: 99.0 bits (245), Expect = 1.060e-22
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 ERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            +RAK+K G+ +LILGA+GGVGLAA+++ KA GA ++A AS+ EKL  C+  GAD+L+NY+          R DWR A+K  T G+G+DVV D VGG   E
Sbjct:  133 DRAKLKNGENMLILGAAGGVGLAAIEIGKALGARIIACASSEEKLAVCRQHGADVLINYS----------REDWREAVKAATGGKGVDVVYDPVGGDYAE 222          
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Match: A0A7S2S7N2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S7N2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-22
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQDSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDCE 303
            ++RAK++ G+ VL+LGASGGVGLAAV+LAKA GATV+AAAST +KL  C+  GAD L+NY+          ++D R  +K  T+G+G+DVV D VG    E
Sbjct:   98 RQRAKLQPGETVLVLGASGGVGLAAVELAKAMGATVIAAASTDKKLDICKSCGADFLINYS----------KQDIRKQVKEFTDGKGVDVVYDPVGDKYAE 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig123227.1755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS50_9PHAE1.780e-4077.23PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A841MWY0_9BACT2.530e-2450.48NADPH2:quinone reductase n=1 Tax=Algoriphagus ioca... [more]
A0A349YB53_9PROT1.930e-2352.48NADPH:quinone oxidoreductase n=4 Tax=Betaproteobac... [more]
UPI001FF40FD12.620e-2353.47NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A2T5J3G1_9GAMM3.720e-2352.48NADPH2:quinone reductase n=1 Tax=Agitococcus lubri... [more]
A0A3D0ETH9_9PROT3.770e-2352.48NADPH:quinone oxidoreductase n=1 Tax=Betaproteobac... [more]
A0A318E2Q6_9GAMM7.380e-2352.48NADPH:quinone reductase-like Zn-dependent oxidored... [more]
UPI001991BD881.020e-2252.48NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
UPI001C441DB01.060e-2251.00NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A7S2S7N2_9STRA1.280e-2252.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig123227contigH-elongata_contig123227:1220..1531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D8LJN9
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00344,ko:K00384,ko:K15172
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0604@1,KOG1198@2759
Ec32 ortholog descriptionPolyketide synthase, enoylreductase domain
Ec32 orthologEc-17_002760.3
EC1.6.5.5,1.8.1.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929724.5491328-CDS-H-elongata_contig123227:1219..15311622929724.5491328-CDS-H-elongata_contig123227:1219..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123227 1220..1531 -
1691679133.6788914-CDS-H-elongata_contig123227:1219..15311691679133.6788914-CDS-H-elongata_contig123227:1219..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig123227 1220..1531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig123227.1755.1prot_H-elongata_contig123227.1755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig123227 1220..1531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig123227.1755.1

>prot_H-elongata_contig123227.1755.1 ID=prot_H-elongata_contig123227.1755.1|Name=mRNA_H-elongata_contig123227.1755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
QERAKVKRGDLVLILGASGGVGLAAVQLAKAAGATVVAAASTGEKLQTCQ
DSGADLLLNYNYREGGGNDGGRRDWRSALKRLTEGRGIDVVLDNVGGSDC
EVR*
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mRNA from alignment at H-elongata_contig123227:1220..1531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig123227.1755.1 ID=mRNA_H-elongata_contig123227.1755.1|Name=mRNA_H-elongata_contig123227.1755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig123227:1220..1531- (Himanthalia elongata Himel1 dioecious)
CAGGAGCGCGCCAAGGTCAAGAGAGGGGACCTCGTCCTCATTCTCGGGGC TTCGGGCGGTGTGGGACTGGCCGCCGTCCAGCTAGCCAAGGCTGCTGGAG CCACCGTGGTCGCCGCCGCATCAACAGGGGAAAAGTTGCAAACTTGTCAA GACTCCGGCGCCGACCTACTCCTCAACTACAACTACCGGGAGGGTGGCGG CAACGATGGTGGAAGGAGGGACTGGCGGAGCGCGCTGAAGCGTCTCACGG AGGGGAGGGGCATCGACGTCGTGCTGGACAACGTTGGCGGGTCGGATTGC GAGGTGCGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig123227:1220..1531-

>mRNA_H-elongata_contig123227.1755.1 ID=mRNA_H-elongata_contig123227.1755.1|Name=mRNA_H-elongata_contig123227.1755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig123227:1220..1531- (Himanthalia elongata Himel1 dioecious)
CAGGAGCGCGCCAAGGTCAAGAGAGGGGACCTCGTCCTCATTCTCGGGGC
TTCGGGCGGTGTGGGACTGGCCGCCGTCCAGCTAGCCAAGGCTGCTGGAG
CCACCGTGGTCGCCGCCGCATCAACAGGGGAAAAGTTGCAAACTTGTCAA
GACTCCGGCGCCGACCTACTCCTCAACTACAACTACCGGGAGGGTGGCGG
CAACGATGGTGGAAGGAGGGACTGGCGGAGCGCGCTGAAGCGTCTCACGG
AGGGGAGGGGCATCGACGTCGTGCTGGACAACGTTGGCGGGTCGGATTGC
GAGGTGCGCTAACAGGAGCGCGCCAAGGTCAAGAGAGGGGACCTCGTCCT
CATTCTCGGGGCTTCGGGCGGTGTGGGACTGGCCGCCGTCCAGCTAGCCA
AGGCTGCTGGAGCCACCGTGGTCGCCGCCGCATCAACAGGGGAAAAGTTG
CAAACTTGTCAAGACTCCGGCGCCGACCTACTCCTCAACTACAACTACCG
GGAGGGTGGCGGCAACGATGGTGGAAGGAGGGACTGGCGGAGCGCGCTGA
AGCGTCTCACGGAGGGGAGGGGCATCGACGTCGTGCTGGACAACGTTGGC
GGGTCGGATTGCGAGGTGCGCTAA
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