mRNA_H-elongata_contig122968.1748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122968.1748.1
Unique NamemRNA_H-elongata_contig122968.1748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.810e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSS RSKHIDVR+HFIREL  SG + VE+V+++ QHAD+LTKAL     + HR ALMNLP+
Sbjct:   78 LSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCRVKLEYHRKALMNLPE 138
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BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.020e-15
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    4 SSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLP 180
            SS RSKHIDVR+HFIREL  SG + VE++ ++ QHAD+LTKAL     + HR ALMN+P
Sbjct:   52 SSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNMP 110
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BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KJM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.380e-14
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSSGR+KHIDVR+HFIR L  SGN+ V  V +  QHADVLTKAL  A  + HR  LMNLP+
Sbjct:  172 LSSGRTKHIDVRFHFIRGLFRSGNISVNFVPTTEQHADVLTKALSRASLQYHRRKLMNLPE 232
[Close]
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5JJC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.860e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSSGR+KHIDVR+HFIR L  SG + V+ V +  QHAD+LTKAL  A  + HR  LMNLP+
Sbjct:   57 LSSGRTKHIDVRFHFIRGLFRSGEISVKFVPTTEQHADLLTKALSRASLQYHRRKLMNLPE 117
[Close]
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5JBC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.930e-14
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLP 180
            LSSGR+KHIDVR+HFIR L  SG + V+ V +  QHAD+LTKAL  A  + HR  LMNLP
Sbjct:    8 LSSGRTKHIDVRFHFIRGLFRSGEISVKFVPTTEQHADLLTKALSRASRQYHRRKLMNLP 67
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BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KEN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.980e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSSGRSKHIDVR HF+R L   G +++ HV+S+ QHA +LTKALP  LF+ HR  ++ L +
Sbjct:   68 LSSGRSKHIDVRHHFLRSLTEEGRIKISHVSSKEQHAAILTKALPRELFEVHRNFVLGLSE 128
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BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5K9S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.490e-14
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSSGR+KHIDVR+HFIR L  SG++ V+ V +  +HAD+LTKAL  A  + HR  LMN+P+
Sbjct:   52 LSSGRTKHIDVRFHFIRGLFGSGDISVKFVPTTERHADLLTKALSRASLQYHRRKLMNMPE 112
[Close]
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KQ33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ33_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.910e-14
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 SGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLP 180
            S RSKHIDVR+HFIREL  +G +  ++V++E QHAD+LTK L     + HR ALMNLP
Sbjct:   43 SARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 100
[Close]
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KQX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.480e-14
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 SSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLP 180
            SS RSKHIDVR+HFIREL  SG +  E+V +  QHAD+LTK L     + HR ALMNLP
Sbjct:   50 SSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMNLP 108
[Close]
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Match: A0A6H5KLA3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.290e-13
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFKRHRAALMNLPD 183
            LSSGR+KHIDVR+HFIR L   G + V+ V +  QHADVLTKAL  A  + HR  LMNLP+
Sbjct:   95 LSSGRTKHIDVRFHFIRGLFRLGEISVKFVPTTEQHADVLTKALSRASLQYHRRKLMNLPE 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122968.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVG7_9PHAE1.810e-1663.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU04_9PHAE4.020e-1561.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM0_9PHAE1.380e-1463.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJC5_9PHAE1.860e-1460.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBC8_9PHAE2.930e-1461.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEN1_9PHAE4.980e-1455.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9S5_9PHAE6.490e-1457.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ33_9PHAE6.910e-1458.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX9_9PHAE8.480e-1461.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA3_9PHAE1.290e-1360.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122968contigH-elongata_contig122968:3..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue4e-08
Seed eggNOG ortholog161934.XP_010683797.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37YXJ@33090,3GHMT@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.9517462-CDS-H-elongata_contig122968:2..1941622929723.9517462-CDS-H-elongata_contig122968:2..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122968 3..194 +
1691679133.4465058-CDS-H-elongata_contig122968:2..1941691679133.4465058-CDS-H-elongata_contig122968:2..194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122968 3..194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.9691136-UTR-H-elongata_contig122968:194..4651622929723.9691136-UTR-H-elongata_contig122968:194..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122968 195..465 +
1691679133.4553587-UTR-H-elongata_contig122968:194..4651691679133.4553587-UTR-H-elongata_contig122968:194..465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122968 195..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122968.1748.1prot_H-elongata_contig122968.1748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122968 3..194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122968.1748.1

>prot_H-elongata_contig122968.1748.1 ID=prot_H-elongata_contig122968.1748.1|Name=mRNA_H-elongata_contig122968.1748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
LSSGRSKHIDVRWHFIRELIASGNVRVEHVASEWQHADVLTKALPAALFK
RHRAALMNLPDDT*
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mRNA from alignment at H-elongata_contig122968:3..465+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122968.1748.1 ID=mRNA_H-elongata_contig122968.1748.1|Name=mRNA_H-elongata_contig122968.1748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=463bp|location=Sequence derived from alignment at H-elongata_contig122968:3..465+ (Himanthalia elongata Himel1 dioecious)
CTCAGTTCTGGGCGCAGTAAACATATAGATGTGAGGTGGCACTTTATTAG
GGAGCTGATAGCGTCTGGGAACGTGAGGGTGGAACACGTAGCATCAGAGT
GGCAGCACGCGGACGTGTTGACAAAAGCGCTCCCTGCCGCGCTGTTTAAG
CGACACCGTGCGGCGCTGATGAACCTGCCCGACGACACGTGAGGGGATAT
TATTATTTTATTTTTTTGTGTGAGTGAGCACCTCCGAGTTTCCCTGTGTT
AGCGCTAGACGTCTGAGGTCATGTTTTCGTAACGCGTTTGTGCGTGCATC
GGGCCAAGCCACCCAAGCTACTTTGTGGGGCGTGGGTTTTGTAGGGTGTT
CCCCGGTGTTTCGCGCATCTGGCCTTGACCGACGTCTATGACTGCGCTGT
AGTATAGTTGCAATTGGCGACTAGTCATTCGGAGTATCTTGAGAAGTACA
TTGTAGCATGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig122968:3..465+

>mRNA_H-elongata_contig122968.1748.1 ID=mRNA_H-elongata_contig122968.1748.1|Name=mRNA_H-elongata_contig122968.1748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig122968:3..465+ (Himanthalia elongata Himel1 dioecious)
CTCAGTTCTGGGCGCAGTAAACATATAGATGTGAGGTGGCACTTTATTAG
GGAGCTGATAGCGTCTGGGAACGTGAGGGTGGAACACGTAGCATCAGAGT
GGCAGCACGCGGACGTGTTGACAAAAGCGCTCCCTGCCGCGCTGTTTAAG
CGACACCGTGCGGCGCTGATGAACCTGCCCGACGACACGTGACTCAGTTC
TGGGCGCAGTAAACATATAGATGTGAGGTGGCACTTTATTAGGGAGCTGA
TAGCGTCTGGGAACGTGAGGGTGGAACACGTAGCATCAGAGTGGCAGCAC
GCGGACGTGTTGACAAAAGCGCTCCCTGCCGCGCTGTTTAAGCGACACCG
TGCGGCGCTGATGAACCTGCCCGACGACACGTGA
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