prot_H-elongata_contig122920.1745.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122920.1745.1
Unique Nameprot_H-elongata_contig122920.1745.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
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BLAST of mRNA_H-elongata_contig122920.1745.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.680e-6
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    1 RSAYKDAAELLKRALRVRLESLGSKHLDTADTLRRLGSLQHQLGCFDDA 49
            R A+++A  L + AL VR E LG KHLDTADTLR+LG L H+ G  ++A
Sbjct:  867 RLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGLLHRQGLLEEA 915
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122920.1745.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE2.680e-655.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..54
e-value: 6.7E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..53
NoneNo IPR availablePFAMPF13424TPR_12coord: 4..51
e-value: 1.1E-8
score: 35.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122920contigH-elongata_contig122920:815..979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122920.1745.1mRNA_H-elongata_contig122920.1745.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122920 815..979 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122920.1745.1 ID=prot_H-elongata_contig122920.1745.1|Name=mRNA_H-elongata_contig122920.1745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RSAYKDAAELLKRALRVRLESLGSKHLDTADTLRRLGSLQHQLGCFDDAE
GCFM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf