mRNA_H-elongata_contig122851.1739.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122851.1739.1
Unique NamemRNA_H-elongata_contig122851.1739.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: D7FYI3_ECTSI (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.050e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARL 144
            CLEDEMNGKH+RMKLVARQSQLLSSITELAVSLRRPPQDVVPALF RL
Sbjct:  225 CLEDEMNGKHERMKLVARQSQLLSSITELAVSLRRPPQDVVPALFLRL 272
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A836C784_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C784_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.290e-15
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARL 144
            CLEDEMNGKH R +LVARQSQ+LS+ITELAV LRRPPQDVV   F RL
Sbjct:  225 CLEDEMNGKHTRAQLVARQSQMLSNITELAVGLRRPPQDVVIPFFRRL 272
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7S2XXR3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.450e-12
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLK 147
            CLEDEMN KHDRMK VA QSQ+LSSITELA S+ R P+DVV   F R++
Sbjct:  243 CLEDEMNAKHDRMKKVAHQSQILSSITELAASMDRHPRDVVIPFFKRVQ 291
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: W7TC69_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC69_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.350e-12
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLK 147
            CLEDEMNGKH RMK  ARQSQ+LS ITELA SL R P+DVV   F RL+
Sbjct:  268 CLEDEMNGKHARMKNTARQSQILSHITELAHSLDRSPRDVVVPFFRRLQ 316
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7R9YE37_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE37_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.740e-12
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLKVSQ 156
            CLEDEMNG H RM+L ARQSQ+LS+I ELA S+ R P+D++ A F +++  Q
Sbjct:  305 CLEDEMNGNHSRMRLCARQSQILSNIAELAKSMNRHPRDILDAFFVKMREGQ 356
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: F0Y5X3_AURAN (Hsp90 chaperone protein kinase-targeting subunit (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5X3_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 5.170e-11
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLKVSQ 156
            CLEDEMNG HD+M L AR SQ+LS +TELA SL+R P+DVV   F R+   Q
Sbjct:  190 CLEDEMNGYHDKMVLSARNSQILSHVTELATSLQRHPRDVVLPFFKRIAEEQ 241
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7S2FGF6_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGF6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARL 144
            CLE+EMNG H++M  VARQSQ+LS ITELA SL+R P+DVV   F R+
Sbjct:  226 CLEEEMNGNHEKMMHVARQSQILSHITELAGSLKRAPRDVVLPFFRRI 273
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BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7S2L4Z6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L4Z6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.480e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 LEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLKVSQL 159
            LEDEMNG H++MKLVARQSQ++S+I ELA SL+R P +V+   F R++  QL
Sbjct:   31 LEDEMNGFHEKMKLVARQSQIVSNIAELAKSLQRHPGNVIVPFFQRMEDKQL 82
[Close]
BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7S3NDY3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NDY3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.700e-10
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLKVSQLVT 165
            CLEDEMNG H++MK  A+ SQLL+ ITELAVS+ R P+DVV   F R++ S  ++
Sbjct:  231 CLEDEMNGFHEKMKRAAQNSQLLAHITELAVSMNRHPRDVVLPFFHRIQDSNYLS 285
[Close]
BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Match: A0A7S3ZZQ4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZQ4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.580e-10
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 CLEDEMNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLK 147
            CLEDEMNG  D+MKL +R SQ+LS +T+LA SL R P+DVV   F+R++
Sbjct:  171 CLEDEMNGFPDKMKLASRNSQVLSHVTDLAASLNRHPRDVVLPFFSRIE 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122851.1739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FYI3_ECTSI7.050e-2195.83Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A836C784_9STRA3.290e-1579.17Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2XXR3_9STRA2.450e-1269.39Hsp90 chaperone protein kinase-targeting subunit n... [more]
W7TC69_9STRA6.350e-1271.43Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7R9YE37_9STRA8.740e-1257.69Hsp90 chaperone protein kinase-targeting subunit n... [more]
F0Y5X3_AURAN5.170e-1161.54Hsp90 chaperone protein kinase-targeting subunit (... [more]
A0A7S2FGF6_9STRA1.400e-1064.58Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2L4Z6_9STRA1.480e-1059.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3NDY3_9STRA2.700e-1056.36Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S3ZZQ4_9STRA8.580e-1059.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122851contigH-elongata_contig122851:1618..1797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog2880.D7FYI3
Preferred nameCDC37
KEGG koko:K09554
KEGG Pathwayko04151,map04151
GOsGO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
EggNOG free text desc.chaperone binding
EggNOG OGsKOG2260@1,KOG2260@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.311389-CDS-H-elongata_contig122851:1617..17821622929723.311389-CDS-H-elongata_contig122851:1617..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122851 1618..1782 -
1691679133.2013774-CDS-H-elongata_contig122851:1617..17821691679133.2013774-CDS-H-elongata_contig122851:1617..1782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122851 1618..1782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929723.3292384-UTR-H-elongata_contig122851:1782..17971622929723.3292384-UTR-H-elongata_contig122851:1782..1797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122851 1783..1797 -
1691679133.2135062-UTR-H-elongata_contig122851:1782..17971691679133.2135062-UTR-H-elongata_contig122851:1782..1797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig122851 1783..1797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122851.1739.1prot_H-elongata_contig122851.1739.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122851 1618..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122851.1739.1

>prot_H-elongata_contig122851.1739.1 ID=prot_H-elongata_contig122851.1739.1|Name=mRNA_H-elongata_contig122851.1739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MNGKHDRMKLVARQSQLLSSITELAVSLRRPPQDVVPALFARLKVSQLVT
KLLS*
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mRNA from alignment at H-elongata_contig122851:1618..1797-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122851.1739.1 ID=mRNA_H-elongata_contig122851.1739.1|Name=mRNA_H-elongata_contig122851.1739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig122851:1618..1797- (Himanthalia elongata Himel1 dioecious)
TGCCTCGAGGACGAGATGAACGGTAAGCACGATCGCATGAAGCTCGTGGC
GAGGCAGAGCCAGCTCCTGTCGAGCATCACTGAGTTAGCCGTCTCTCTCC
GTCGACCGCCGCAGGACGTGGTGCCGGCCCTTTTCGCGCGACTGAAAGTG
AGTCAGTTAGTTACCAAGTTACTCAGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig122851:1618..1797-

>mRNA_H-elongata_contig122851.1739.1 ID=mRNA_H-elongata_contig122851.1739.1|Name=mRNA_H-elongata_contig122851.1739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig122851:1618..1797- (Himanthalia elongata Himel1 dioecious)
ATGAACGGTAAGCACGATCGCATGAAGCTCGTGGCGAGGCAGAGCCAGCT
CCTGTCGAGCATCACTGAGTTAGCCGTCTCTCTCCGTCGACCGCCGCAGG
ACGTGGTGCCGGCCCTTTTCGCGCGACTGAAAGTGAGTCAGTTAGTTACC
AAGTTACTCAGTTAAATGAACGGTAAGCACGATCGCATGAAGCTCGTGGC
GAGGCAGAGCCAGCTCCTGTCGAGCATCACTGAGTTAGCCGTCTCTCTCC
GTCGACCGCCGCAGGACGTGGTGCCGGCCCTTTTCGCGCGACTGAAAGTG
AGTCAGTTAGTTACCAAGTTACTCAGTTAA
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