mRNA_H-elongata_contig101944.174.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101944.174.1
Unique NamemRNA_H-elongata_contig101944.174.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101944.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101944contigH-elongata_contig101944:102..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.3896303-CDS-H-elongata_contig101944:101..4071622929559.3896303-CDS-H-elongata_contig101944:101..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101944 102..407 +
1691679070.0732393-CDS-H-elongata_contig101944:101..4071691679070.0732393-CDS-H-elongata_contig101944:101..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101944 102..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101944.174.1prot_H-elongata_contig101944.174.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101944 102..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101944.174.1

>prot_H-elongata_contig101944.174.1 ID=prot_H-elongata_contig101944.174.1|Name=mRNA_H-elongata_contig101944.174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VLGGVYCLLTVLSVMAVKATNTHAYTHTHFGGGPGIFTLASIACVCVCVC
VYANICCCWHEPRGIAQVSVGSSWSRRFRTFCGVQPLPSPLPPSCLVCVV
AV
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mRNA from alignment at H-elongata_contig101944:102..409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101944.174.1 ID=mRNA_H-elongata_contig101944.174.1|Name=mRNA_H-elongata_contig101944.174.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=308bp|location=Sequence derived from alignment at H-elongata_contig101944:102..409+ (Himanthalia elongata Himel1 dioecious)
GTACTCGGGGGGGTGTATTGTTTGTTGACAGTCTTATCAGTCATGGCAGT
GAAGGCGACAAATACACACGCATATACACACACACACTTTGGAGGAGGCC
CGGGGATTTTTACTCTCGCCTCGATCGCGTGTGTGTGTGTGTGTGTGTGT
GTGTACGCGAATATCTGTTGTTGCTGGCACGAACCGCGTGGCATCGCGCA
GGTATCAGTCGGGAGTAGTTGGTCGAGACGTTTTCGAACCTTTTGCGGCG
TACAACCCCTCCCCTCCCCTCTCCCCCCGTCCTGTCTCGTTTGCGTCGTT
GCCGTTGT
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Coding sequence (CDS) from alignment at H-elongata_contig101944:102..409+

>mRNA_H-elongata_contig101944.174.1 ID=mRNA_H-elongata_contig101944.174.1|Name=mRNA_H-elongata_contig101944.174.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig101944:102..409+ (Himanthalia elongata Himel1 dioecious)
GTACTCGGGGGGGTGTATTGTTTGTTGACAGTCTTATCAGTCATGGCAGT
GAAGGCGACAAATACACACGCATATACACACACACACTTTGGAGGAGGCC
CGGGGATTTTTACTCTCGCCTCGATCGCGTGTGTGTGTGTGTGTGTGTGT
GTGTACGCGAATATCTGTTGTTGCTGGCACGAACCGCGTGGCATCGCGCA
GGTATCAGTCGGGAGTAGTTGGTCGAGACGTTTTCGAACCTTTTGCGGCG
TACAACCCCTCCCCTCCCCTCTCCCCCCGTCCTGTCTCGTTTGCGTCGTT
GCCGTTGTACTCGGGGGGGTGTATTGTTTGTTGACAGTCTTATCAGTCAT
GGCAGTGAAGGCGACAAATACACACGCATATACACACACACACTTTGGAG
GAGGCCCGGGGATTTTTACTCTCGCCTCGATCGCGTGTGTGTGTGTGTGT
GTGTGTGTGTACGCGAATATCTGTTGTTGCTGGCACGAACCGCGTGGCAT
CGCGCAGGTATCAGTCGGGAGTAGTTGGTCGAGACGTTTTCGAACCTTTT
GCGGCGTACAACCCCTCCCCTCCCCTCTCCCCCCGTCCTGTCTCGTTTGC
GTCGTTGCCGTT
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