mRNA_H-elongata_contig9986.17303.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9986.17303.1
Unique NamemRNA_H-elongata_contig9986.17303.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: D8LL91_ECTSI (NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL91_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 4.560e-123
Identity = 181/215 (84.19%), Postives = 192/215 (89.30%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASSRILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRS-SIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRLEEWGQAKK 657
            QLMELAGLSVACAIAKVYP  SR+LIVCGPGNNGGDGLVAARHLW FGYRP CLYPKPT RQLFTNLVEQCKQL IEFL SW EA G LG     ++D+VLD MFGFGFKGDPRPPFD ILKDLS+S + PVVS+DVPSGWSVDEGD+ G GLKPEMLISLTAPKLSARFF+G HHFLGGRFVPPGIASKYSLELPAYPGSEQCVRLEEWGQ ++
Sbjct:   38 QLMELAGLSVACAIAKVYPPPSRVLIVCGPGNNGGDGLVAARHLWQFGYRPTCLYPKPTARQLFTNLVEQCKQLDIEFLPSW-EAAGDLG-----SYDVVLDAMFGFGFKGDPRPPFDTILKDLSKSGATPVVSVDVPSGWSVDEGDSKGGGLKPEMLISLTAPKLSARFFEGPHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRLEEWGQQRR 246
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A6H5KSM4_9PHAE (NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM4_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 3.260e-89
Identity = 142/169 (84.02%), Postives = 151/169 (89.35%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASSRILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRS-SIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSAR 519
            QLMELAGLSVACAIAKVYP SSR+LIVCGPGNNGGDGLVAARHLWHFGY+P CLYPKPT RQLFTNLVEQCKQL IEFL SW EA G LG     +FD+VLD MFGFGFKGDPRPPFD ILKDLS+S + PVVS+DVPSGWSVDEGD+ GDGLKPEML+SLTAPKLSAR
Sbjct:   85 QLMELAGLSVACAIAKVYPPSSRVLIVCGPGNNGGDGLVAARHLWHFGYKPTCLYPKPTARQLFTNLVEQCKQLDIEFLPSW-EAAGDLG-----DFDVVLDAMFGFGFKGDPRPPFDTILKDLSKSGATPVVSVDVPSGWSVDEGDSKGDGLKPEMLVSLTAPKLSAR 247
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A7S0WQ09_9CHLO (NAD(P)H-hydrate epimerase n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQ09_9CHLO)

HSP 1 Score: 266 bits (680), Expect = 2.570e-81
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASS--RILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLS--RSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRLEEWGQAK 654
            QLMELAGLSVAC++A+VYP++S  ++LI+ GPGNNGGDGLVAARHL HFGY P   YPKPT + L+  LV QCK L I F+++       +G      FD+VLD MFGF FKGDPRPPF  IL  L    +  P+VS+D+PSGW V++GD  G GL+P+ML+SLTAPK  AR F+G HHFLGGRFVPP IA+KYSL+LPAYPG+  CVR+ +   AK
Sbjct:  127 QLMELAGLSVACSLAEVYPSTSHPKVLIIAGPGNNGGDGLVAARHLHHFGYTPTICYPKPTDKVLYNGLVTQCKSLRIPFITAEELLAQPIGA-----FDVVLDAMFGFSFKGDPRPPFAAILNALKPPANPPPIVSVDIPSGWQVEQGDVDGGGLRPDMLVSLTAPKECARTFEGPHHFLGGRFVPPEIATKYSLKLPAYPGTAMCVRIPQTTTAK 338
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A507C3Q7_9FUNG (NAD(P)H-hydrate epimerase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C3Q7_9FUNG)

HSP 1 Score: 262 bits (669), Expect = 3.780e-81
Identity = 127/208 (61.06%), Postives = 155/208 (74.52%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASS--RILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRL 633
            QLME+AGLS ACA+ +VY  ++  R+L++ GPGNNGGD LVAARHL+HFGY+P  LYPKPTQ+ ++  LV+QCK L I F+ S    DG +     EN D+VLDG+FGF F GD RPPFD I+K L +SSIP+VSID+PSGW V++G+    GL PEMLISLTAPK  A  F+G+HH+LG R VPP I  KY L LP YPG EQCVRL
Sbjct:   30 QLMEIAGLSCACALTQVYDRATFPRVLVIAGPGNNGGDALVAARHLFHFGYKPTILYPKPTQKDIYIGLVKQCKNLDIPFVDS---VDGAI-----ENADVVLDGIFGFSFSGDIRPPFDNIIKTLKKSSIPIVSIDIPSGWDVEKGNVVSKGLDPEMLISLTAPKPCALHFRGKHHYLGLRIVPPFIDKKYGLNLPEYPGIEQCVRL 229
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A061S844_9CHLO (NAD(P)H-hydrate epimerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S844_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 1.050e-77
Identity = 131/222 (59.01%), Postives = 159/222 (71.62%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASS--RILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRSSIP--VVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRLEEWGQAKKEDTA 669
            QLMELAGLSVAC+IA VYP +   R+ ++CGPGNNGGDGLVAARHL+HFGY  +  YPKPT + LF  LV QC+ LGI F+++       L G +   FDLV+D MFGF FKG PRPPFD IL  LS ++ P  +  +D+PSGW V++GD TG GL+P+MLISLTAPK  AR F G HH+LGGRFVPP +  KY L LP +PGS QCVR+   G A +  TA
Sbjct:  140 QLMELAGLSVACSIADVYPPAQAPRVAVICGPGNNGGDGLVAARHLYHFGYTVQVCYPKPTSKPLFDGLVTQCRSLGIGFVTTEEL----LQGPMAARFDLVVDAMFGFSFKGSPRPPFDAILAALSPAASPPRLACVDIPSGWHVEDGDQTGVGLRPDMLISLTAPKRGARGFSGAHHYLGGRFVPPAVVEKYHLRLPPFPGSAQCVRI--GGSAAQRGTA 355
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A813ENK1_POLGL (NAD(P)H-hydrate epimerase n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813ENK1_POLGL)

HSP 1 Score: 255 bits (652), Expect = 2.860e-77
Identity = 127/208 (61.06%), Postives = 151/208 (72.60%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYP--ASSRILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRL 633
            QLMELAGLSVA A+ + +P   S R L+VCGPGNNGGDGLVAARHLWHFGY P  +YP    RQLFTNLV QC+QLGI  L+    ++      + E FD+ +D +FGF FKG PR PFD ILK L  SS+ +VS+D+PSGW V+ GD +G+GL+P+ L+SLTAPK  A  F GRH FLGGRFVPPGIA KY L LP YPG+ Q V L
Sbjct:  128 QLMELAGLSVASAVLEAFPPKGSRRALLVCGPGNNGGDGLVAARHLWHFGYTPVVVYPVRPARQLFTNLVVQCEQLGIPVLTGMPTSEE-----VTEGFDVAVDAIFGFSFKGTPRAPFDSILKTLRASSVKLVSVDIPSGWDVELGDVSGEGLRPDALVSLTAPKPCAADFSGRH-FLGGRFVPPGIAEKYGLRLPPYPGAAQVVEL 329
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A8K1FI83_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI83_PYTOL)

HSP 1 Score: 252 bits (644), Expect = 3.350e-77
Identity = 124/216 (57.41%), Postives = 153/216 (70.83%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASS--------RILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRH--HFLGGRFVPPGIASKYSLELPAYPGSEQCVRL 633
            QLMELAGLSVACAI K +P           R+LIV GPGNNGGD LVAARHL HFGY P  LYPK + + LF  LV QC+QL I F+   N++       +D +FDL+LDG+FGF F+G  RPPFD I++ +   S P+VSID+PSGW V+ GD  G GL P+MLISLTAPKL A+FF G+   H++GGRFVPP +A ++ LELP YPG EQC+R+
Sbjct:   34 QLMELAGLSVACAIGKEFPLEQVNAVDVMKRVLIVAGPGNNGGDALVAARHLKHFGYSPSILYPKKSSKPLFQGLVTQCQQLEIPFVEGLNDSKA-----VDADFDLILDGIFGFSFEGAIRPPFDTIIQTIRGCSSPIVSIDIPSGWHVERGDEHGVGLNPKMLISLTAPKLCAQFFSGQDKIHYIGGRFVPPALAKEFDLELPQYPGIEQCIRV 244
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A5D6YA42_9STRA (NAD(P)H-hydrate epimerase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA42_9STRA)

HSP 1 Score: 251 bits (642), Expect = 4.960e-77
Identity = 123/209 (58.85%), Postives = 154/209 (73.68%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYP-ASSRILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQG--RHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRL 633
            QLMELAGLSVACA+   +P A++R+L+V GPGNNGGD LVAARHL HFGY P  LYPK + R LFT LV QC+QLGI F+      D      LD  FDLVLDG+FGF F+G  R PFD ++  L +   P+VSID+PSGW V+ G+ +G+GL+P+ML+SLTAPKL AR F+G  + H+LGGRF+P  +A ++ LELP YPG EQCV+L
Sbjct:   36 QLMELAGLSVACAVGTQFPPAANRVLVVAGPGNNGGDALVAARHLKHFGYAPAVLYPKRSARPLFTGLVTQCEQLGISFVDCVPTVDT-----LDAEFDLVLDGIFGFSFQGSVRAPFDDVIAALKQCRAPIVSIDIPSGWHVENGNESGNGLEPQMLVSLTAPKLCARHFEGPDKVHYLGGRFLPKSLAEEFGLELPPYPGVEQCVKL 239
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A507CB92_9FUNG (YjeF N-terminal domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CB92_9FUNG)

HSP 1 Score: 251 bits (642), Expect = 6.040e-77
Identity = 123/211 (58.29%), Postives = 155/211 (73.46%), Query Frame = 1 
Query:   10 LVQLMELAGLSVACAIAKVYPASS--RILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDPRPPFDVILKDLSRS-SIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQCVRL 633
            L QLME+A  SVAC+I++VY   +  RIL+  GPGNNGGD L AARHL HFGY+P  LYPKPT++ ++  LV+QCK L + F+ +    D  +     +N DLVLDG+FGF F GD RPPFD ++  L +S SIP+VSID+PSGW V++G+    GL+PEMLISLTAPKL A+FF+G+HH+LG R VPP IA KY L LP YPG +QCVRL
Sbjct:   29 LYQLMEMAAFSVACSISQVYDKKTHPRILVCVGPGNNGGDALAAARHLSHFGYKPTVLYPKPTKKDIYDGLVKQCKNLEMSFIDTIASDDNTM-----KNTDLVLDGIFGFNFGGDVRPPFDHVISTLKQSPSIPIVSIDIPSGWDVEKGNVDSRGLEPEMLISLTAPKLCAKFFKGKHHYLGLRMVPPFIAEKYQLNLPEYPGIDQCVRL 234
[Close]
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Match: A0A7S2S1N8_9STRA (NAD(P)H-hydrate epimerase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S1N8_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.390e-76
Identity = 120/214 (56.07%), Postives = 157/214 (73.36%), Query Frame = 1 
Query:   16 QLMELAGLSVACAIAKVYPASSRILIVCGPGNNGGDGLVAARHLWHFGYRPKCLYPKPTQRQ----LFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLDGMFGFGFKGDP--RPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGLKPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLE-LPAYPGSEQCVRLE 636
            QLMELAGLSVACA+A V+P +S++L VCGPGNNGGD LV+ARHL+HFGY+P  LYPK  +      L+ NL++QCK L I  + S  E+           +D+VLDG+FGF F G    R P+D +++ L  +++P+ SIDVPSGW V++GD  GDG+KP ML+SLTAPKL A  F+G HH+LGGRF+PP +A KY+L+ LP YPG++QCVRLE
Sbjct:   27 QLMELAGLSVACAVAAVWPVASKVLTVCGPGNNGGDALVSARHLYHFGYKPVVLYPKAPKESGNGILYRNLLQQCKDLDIPVIDSVPESIS------QHEYDVVLDGVFGFSFNGSNGVRAPYDKVMQVLKETNVPIASIDVPSGWDVEQGDAHGDGIKPSMLVSLTAPKLCASTFKGEHHYLGGRFLPPKLAVKYNLQGLPEYPGTDQCVRLE 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9986.17303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL91_ECTSI4.560e-12384.19NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KSM4_9PHAE3.260e-8984.02NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus sp. C... [more]
A0A7S0WQ09_9CHLO2.570e-8160.37NAD(P)H-hydrate epimerase n=2 Tax=Pyramimonas obov... [more]
A0A507C3Q7_9FUNG3.780e-8161.06NAD(P)H-hydrate epimerase n=1 Tax=Synchytrium micr... [more]
A0A061S844_9CHLO1.050e-7759.01NAD(P)H-hydrate epimerase n=1 Tax=Tetraselmis sp. ... [more]
A0A813ENK1_POLGL2.860e-7761.06NAD(P)H-hydrate epimerase n=2 Tax=Polarella glacia... [more]
A0A8K1FI83_PYTOL3.350e-7757.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YA42_9STRA4.960e-7758.85NAD(P)H-hydrate epimerase n=1 Tax=Pythium brassicu... [more]
A0A507CB92_9FUNG6.040e-7758.29YjeF N-terminal domain-containing protein n=1 Tax=... [more]
A0A7S2S1N8_9STRA1.390e-7656.07NAD(P)H-hydrate epimerase n=1 Tax=labyrinthulid qu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9986contigH-elongata_contig9986:4780..7357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.7e-99
Seed eggNOG ortholog2880.D8LL91
Preferred nameAPOA1BP
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K11353,ko:K17759
KEGG TC3.D.1.6
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00190,ko00750,ko01100,ko01120,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00750,map01100,map01120,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00124,M00146
GOsGO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0006081,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016641,GO:0016853,GO:0016854,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0022607,GO:0031974,GO:0031981,GO:0034356,GO:0034641,GO:0034654,GO:0042364,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046496,GO:0046983,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052856,GO:0052857,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0120025,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.NADPHX epimerase activity
EggNOG OGsCOG0062@1,KOG2585@2759
EC1.4.3.5,5.1.99.6
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYjeF N-terminal domain
Ec32 orthologEc-27_001750.1
Exons5
Model size1603
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931386.4843392-UTR-H-elongata_contig9986:4779..48001622931386.4843392-UTR-H-elongata_contig9986:4779..4800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9986 4780..4800 +
1691679815.148782-UTR-H-elongata_contig9986:4779..48001691679815.148782-UTR-H-elongata_contig9986:4779..4800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9986 4780..4800 +
1622931386.6572652-UTR-H-elongata_contig9986:6447..73571622931386.6572652-UTR-H-elongata_contig9986:6447..7357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9986 6448..7357 +
1691679815.2104778-UTR-H-elongata_contig9986:6447..73571691679815.2104778-UTR-H-elongata_contig9986:6447..7357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9986 6448..7357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931386.502069-CDS-H-elongata_contig9986:4800..48971622931386.502069-CDS-H-elongata_contig9986:4800..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 4801..4897 +
1691679815.1601431-CDS-H-elongata_contig9986:4800..48971691679815.1601431-CDS-H-elongata_contig9986:4800..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 4801..4897 +
1622931386.5479193-CDS-H-elongata_contig9986:5243..54201622931386.5479193-CDS-H-elongata_contig9986:5243..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 5244..5420 +
1691679815.1707304-CDS-H-elongata_contig9986:5243..54201691679815.1707304-CDS-H-elongata_contig9986:5243..5420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 5244..5420 +
1622931386.56606-CDS-H-elongata_contig9986:5664..58071622931386.56606-CDS-H-elongata_contig9986:5664..5807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 5665..5807 +
1691679815.179562-CDS-H-elongata_contig9986:5664..58071691679815.179562-CDS-H-elongata_contig9986:5664..5807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 5665..5807 +
1622931386.6237457-CDS-H-elongata_contig9986:6037..61171622931386.6237457-CDS-H-elongata_contig9986:6037..6117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 6038..6117 +
1691679815.188975-CDS-H-elongata_contig9986:6037..61171691679815.188975-CDS-H-elongata_contig9986:6037..6117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 6038..6117 +
1622931386.6409585-CDS-H-elongata_contig9986:6272..64471622931386.6409585-CDS-H-elongata_contig9986:6272..6447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 6273..6447 +
1691679815.1985517-CDS-H-elongata_contig9986:6272..64471691679815.1985517-CDS-H-elongata_contig9986:6272..6447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9986 6273..6447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9986.17303.1prot_H-elongata_contig9986.17303.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9986 4801..6447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9986.17303.1

>prot_H-elongata_contig9986.17303.1 ID=prot_H-elongata_contig9986.17303.1|Name=mRNA_H-elongata_contig9986.17303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
MELAGLSVACAIAKVYPASSRILIVCGPGNNGGDGLVAARHLWHFGYRPK
CLYPKPTQRQLFTNLVEQCKQLGIEFLSSWNEADGGLGGGLDENFDLVLD
GMFGFGFKGDPRPPFDVILKDLSRSSIPVVSIDVPSGWSVDEGDTTGDGL
KPEMLISLTAPKLSARFFQGRHHFLGGRFVPPGIASKYSLELPAYPGSEQ
CVRLEEWGQAKKEDTAGRGHSEL*
back to top

mRNA from alignment at H-elongata_contig9986:4780..7357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9986.17303.1 ID=mRNA_H-elongata_contig9986.17303.1|Name=mRNA_H-elongata_contig9986.17303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2578bp|location=Sequence derived from alignment at H-elongata_contig9986:4780..7357+ (Himanthalia elongata Himel1 dioecious)
GCTGTATGCCTCGTCCAGCTCATGGAGCTTGCGGGATTGAGCGTTGCGTG
CGCGATCGCCAAGGTGTACCCCGCGTCTTCTCGCATCCTCATCGTTTGCG
GCCCGGGGAACAACGGGGGTGAGTGTCCATGATTGATTCCCACTCACCCG
ACATTTATAATGTTTTTTTTTGTTTTTGTCTTGCGAACCAACAGTCCGCA
GTAGGCATAACGAGCATTAGCCTTGGATTAGCGACTTTCGAGCACCGCAA
TACACGAGTATATCGGGACGTGTTTTTGTAACGCCTTCGCAGACGACCCT
AACGGTACCGTCTTCGGGTACAGCCTCGACCACGACTTAGTTATAGCGTA
ACTACTCGCAGCTGGAGCCTCTGTAGCCATCCCCTTGCGCCAGCAGCCTT
AACCCTATGCCCCTCACGCTTGCTTTGAAACCCCCTGTTGCCTGTGGCCT
GGATTCGTTTCCAGGCGATGGACTAGTGGCCGCAAGACACCTGTGGCATT
TCGGATACCGGCCGAAGTGTCTCTACCCGAAGCCCACCCAACGGCAACTC
TTCACCAACCTTGTCGAACAGTGCAAGCAGCTTGGTATCGAGTTCCTCTC
GTCGTGGAACGAAGCTGACGGGGGCCTAGGTGGCGGCCTAGGTGAGGAAC
TAGATAGCAGGGGAACGAAAGGCATCGACCCAAGTCCTCGCTGTTCGATG
TTTACAATAATTCCACACGAAGCCTCTTCGTTTCAATGAGAGCAGTCCAG
GCCAGCAACGGGGAGGATCAACATTTCACATTACAGCTACTACAGTAATC
CTGAACATTTCCGCGACAGCTTAAAGTCGCTTGTGGGAAGCAGGACCTCC
AGATTTGAGAGTTTGATGTTTTGTCGGTCCAGCAGATGAGAATTTCGACC
TGGTACTCGACGGGATGTTCGGCTTCGGCTTCAAGGGTGACCCACGACCG
CCGTTCGACGTGATACTCAAGGATCTTTCGAGGAGCAGCATCCCCGTGGT
TTCCATTGATGTGCCCTCGGGCTGGTCGGTGAGGGCGCCTGCTCACGCAA
CGCTCGATTCGGCCGCATTCTTGGCGCGCCTGCCAACATTCTACCAAACC
CACCAATCCAAAACTTTCGTTTTTATTTTTCATTTTAGGTCATATTTTTC
AAATTTTCCGACTCTCGACACCATGAACCACCTGAAATGATCGATCAATA
GGCGTATTCATGGTCTCATTCTTCGCGTCCTTCCCATGAACCACGACTGA
CGGTGAAGGTTGACGAGGGCGACACAACAGGAGACGGCCTGAAGCCCGAG
ATGCTGATCTCGCTCACCGCGCCAAAACTCAGCGCGAGGTGCGTCGACCT
GCTTTTCCGTGATAAATGCCAGCGGAATACCGATCCTGTCCTGATAGCCC
CAAAGGGCTGCTCCCGCCTTCTCCTTGCCTTCGCGAGTCAGATCCGTGGC
ACTTCAGCATTCTCTCTGTCCTCTTCCTTTGTCCCACGCGCAGATTTTTT
CAGGGGCGTCATCACTTTCTTGGGGGGCGATTCGTGCCTCCAGGCATCGC
CAGCAAGTATTCGCTGGAGTTGCCGGCGTACCCTGGCTCCGAGCAGTGCG
TCCGGCTGGAGGAATGGGGACAGGCGAAAAAGGAAGATACAGCCGGTCGG
GGGCATTCAGAGCTGTAGCTTGCGGAGGAGATAGTGGTGGTGTCCAGTTC
GAGGGTGAAGCCCGTCGGTGCCCCCTTGCTGCCCCCTTCAATAATGCTTG
TCGTTATAATTCCCCACGCGATTATTTTTTGGCCGAACGGAGACGGTGCT
CAAGCAGCGTTACATGTGCCTTCGTGATACCGCAACGCTGTGGACAGAGC
AAAAACTATCGAACGTGACGTCACGCGAGATACGTACTCTCGACTTTTAC
CGCAATTGTTGACGTAAAGAAAGTGTGGATGCTCGGAGGGCTACAGCAGG
TAATATATCTATAATAGTAGAGGCGGTTTCGGAGTTTTGAAGAAATATTA
AGTAGAGTCGTGTGAAAAGTCTTCGCGTGGTTTCCTTTTTTTCCCATTTT
TTTTTCCCCGACGGAGGGAGTACGGAAGTAATATTCTGAAATACACCTTA
ATTTCTTGGGATTTTCAGGCAGAAAGCGGAACTCTAGTTACCAGCGGCCC
CAAATTTAAAACTCGTTTAGCGCTGCGCGGTTTACGATACAAGGCAAGCT
TGGCGGGCATTATGTTCTGGCATTGTTATTTTAAAATATATAAACTCATT
CACACCCTCCGAACGCCCACGCCTTATTTCGATGGAATCTTACTTCCCTG
TTGACGGTTCGTGCATCTCACGATACGATACGATACGATACGATGCGTTA
CGATGCGGTACATTGCGTTGCGCGCCTTTGGCAGACAACAGTCAAGCCTG
CTTAAACCAAATACAGACGGAAAAGAGAACGGCACACGGTTATAGCGAGT
TCTATTTTGATCGTTATCGTTGGAAGAAGGAAGAGGGATCAAGCCGCCTA
CCTGCTGAAAAAGCGCGTCAAATTTGTGCAATTCTTGGTGCAATAACGTC
CCTCCCCCTGTTCACTATTTGAAGATGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9986:4780..7357+

>mRNA_H-elongata_contig9986.17303.1 ID=mRNA_H-elongata_contig9986.17303.1|Name=mRNA_H-elongata_contig9986.17303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig9986:4780..7357+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTTGCGGGATTGAGCGTTGCGTGCGCGATCGCCAAGGTGTACCC
CGCGTCTTCTCGCATCCTCATCGTTTGCGGCCCGGGGAACAACGGGGATG
GAGCTTGCGGGATTGAGCGTTGCGTGCGCGATCGCCAAGGTGTACCCCGC
GTCTTCTCGCATCCTCATCGTTTGCGGCCCGGGGAACAACGGGGGCGATG
GACTAGTGGCCGCAAGACACCTGTGGCATTTCGGATACCGGCCGAAGTGT
CTCTACCCGAAGCCCACCCAACGGCAACTCTTCACCAACCTTGTCGAACA
GTGCAAGCAGCTTGGTATCGAGTTCCTCTCGTCGTGGAACGAAGCTGACG
GGGGCCTAGGTGGCGGCCTAGGCGATGGACTAGTGGCCGCAAGACACCTG
TGGCATTTCGGATACCGGCCGAAGTGTCTCTACCCGAAGCCCACCCAACG
GCAACTCTTCACCAACCTTGTCGAACAGTGCAAGCAGCTTGGTATCGAGT
TCCTCTCGTCGTGGAACGAAGCTGACGGGGGCCTAGGTGGCGGCCTAGAT
GAGAATTTCGACCTGGTACTCGACGGGATGTTCGGCTTCGGCTTCAAGGG
TGACCCACGACCGCCGTTCGACGTGATACTCAAGGATCTTTCGAGGAGCA
GCATCCCCGTGGTTTCCATTGATGTGCCCTCGGGCTGGTCGATGAGAATT
TCGACCTGGTACTCGACGGGATGTTCGGCTTCGGCTTCAAGGGTGACCCA
CGACCGCCGTTCGACGTGATACTCAAGGATCTTTCGAGGAGCAGCATCCC
CGTGGTTTCCATTGATGTGCCCTCGGGCTGGTCGGTTGACGAGGGCGACA
CAACAGGAGACGGCCTGAAGCCCGAGATGCTGATCTCGCTCACCGCGCCA
AAACTCAGCGCGAGGTTGACGAGGGCGACACAACAGGAGACGGCCTGAAG
CCCGAGATGCTGATCTCGCTCACCGCGCCAAAACTCAGCGCGAGATTTTT
TCAGGGGCGTCATCACTTTCTTGGGGGGCGATTCGTGCCTCCAGGCATCG
CCAGCAAGTATTCGCTGGAGTTGCCGGCGTACCCTGGCTCCGAGCAGTGC
GTCCGGCTGGAGGAATGGGGACAGGCGAAAAAGGAAGATACAGCCGGTCG
GGGGCATTCAGAGCTGTAGATTTTTTCAGGGGCGTCATCACTTTCTTGGG
GGGCGATTCGTGCCTCCAGGCATCGCCAGCAAGTATTCGCTGGAGTTGCC
GGCGTACCCTGGCTCCGAGCAGTGCGTCCGGCTGGAGGAATGGGGACAGG
CGAAAAAGGAAGATACAGCCGGTCGGGGGCATTCAGAGCTGTAG
back to top