mRNA_H-elongata_contig9894.17239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9894.17239.1
Unique NamemRNA_H-elongata_contig9894.17239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A2E1VUF3_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VUF3_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 7.600e-21
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWR-RQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            + L++L+ +++ L +F  AF ++DLE +R+ +E T V E      RS+NTR+E++EA   F +   +R+ILVSSPTH+ RC+RDA  A +  R  + R  + A+PSD+S++    +DV I EPPHR D
Sbjct:   73 YTLDYLLQHFDELADFP-AFGKVDLEALRRQIESTAVAES-----RSQNTREEVVEAAEHFLERGVERMILVSSPTHISRCVRDAYSALESARFARLRHQLFATPSDSSYLGSRAEDVVIFEPPHRAD 194          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7S0Y436_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y436_HEMAN)

HSP 1 Score: 92.0 bits (227), Expect = 5.430e-20
Identity = 58/130 (44.62%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQ---WRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            F  ++   N++ L  F + FA  DLE + + +    V E       SKNT +EL  AG + RK   +R+ILVSSPTHLPRCLRDAC      R +   W   VL SPS TS+      DVA+IEPPHR D
Sbjct:  115 FTRDYFFENFQKLARF-DVFAGADLERLERLMRERSVAETV-----SKNTVEELELAGEILRKHNVERLILVSSPTHLPRCLRDACVVYGTVRSEKCPWGARVLVSPSGTSYEGASAGDVAVIEPPHRGD 238          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7V7MMY6_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MMY6_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.250e-18
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRA--GDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            + L  L+  +E L  FK AF  +DL  +RK VE   V + +     S NT QE+  A R+F +   + ++LVSSPTHLPRCLRDAC A  G+ +R   R  +LA+PSD+ ++    ++V I EPPHR D
Sbjct:   73 YTLGFLLRRFEELAEFK-AFEGVDLAALRKRVEGIAVADVD-----SMNTEQEVRNAARMFLRQGIEGMVLVSSPTHLPRCLRDACAALVGEEFR-SLRQHLLATPSDSCYLGSRAENVVIFEPPHRAD 194          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7S0HX73_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HX73_9CRYP)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-18
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    7 LEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            ++ +  N+E L NFK+ F ++DL  +R+ +      E      +S NT QEL   G +    +  +IILVSSPTHLPRC+RDA +  D  +  +   + A PSDT +++   +DVAI+EPPHR D
Sbjct:   46 MQFMFENFERLKNFKQ-FQDIDLGRLRERMAEICKVE-----TKSLNTLQELEMCGEIMHNQQVQKIILVSSPTHLPRCIRDAKKVFDGSKFSFANAIFACPSDTCYMNSTVEDVAIVEPPHRGD 164          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7S0V9E4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9E4_9CRYP)

HSP 1 Score: 88.2 bits (217), Expect = 2.320e-18
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQ---WRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            F  ++L+ N++ L  F   FA +DL  + + +    V E       S+NT +EL     + R+ R +R+ILVSSPTHLPRCLRDAC      R +   W   +L  PS TS+    P+DVA++EPPHR D
Sbjct:  149 FTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAE-----TTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVYGTARSERFPWAARLLVCPSGTSYTGAKPEDVAVVEPPHRGD 272          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7S0YME2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YME2_9CRYP)

HSP 1 Score: 87.4 bits (215), Expect = 7.000e-18
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQ---WRPVVLASPSDTSFVDFGPDDVAIIEPPHR 375
            F  ++L+ N++ L  F   FA +DL  + + +    V E       S+NT +EL     + R+ R +R+ILVSSPTHLPRCLRDAC      R +   W   +L  PS TS+    P+DVA++EPPHR
Sbjct:  149 FTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAE-----TTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVYGTARSERFPWAARLLVCPSGTSYTGAKPEDVAVVEPPHR 270          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7S0MPU1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MPU1_9CRYP)

HSP 1 Score: 82.0 bits (201), Expect = 1.610e-17
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIE 363
            + L  L  N+  L  F+  FA++DLE+    +    + E E     S NT  EL++ G +  +  CDR+ILVSSPTHLPRCLRDAC    + R ++   VLA  SDT +    P DVAI+E
Sbjct:   17 YTLRFLQRNFRRLKEFR-LFADIDLEQAEARMRRYAMAEVE-----SANTTDELLKCGDVLSRAGCDRVILVSSPTHLPRCLRDACCIFQKARFRFSGWVLACASDTCYAGAVPGDVAIVE 131          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A6L8DJG4_9BACT (DUF218 domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L8DJG4_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 3.870e-16
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  139 SKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACR--AGDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            SKNTR E+  AGR+F     +R++LVSSPTHLPRCLRDAC     D         + A+PS T +  +  DDVAI EPPHRPD
Sbjct:  132 SKNTRDEIAHAGRVFVDRNVERVVLVSSPTHLPRCLRDACAIYGEDGDLSGLLRELYAAPSVTGYPGYTADDVAIFEPPHRPD 214          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A800IHU9_9BACT (DUF218 domain-containing protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A800IHU9_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 4.690e-16
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  139 SKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRA--GDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            S+NT  E+  AG +F+    ++IILVSSPTHLPRCLRDAC A   DR    +R  + ASPS T ++     DVAI EPPHRPD
Sbjct:  123 SQNTVDEVTRAGHIFKDHDVEQIILVSSPTHLPRCLRDACVAFDNDRELSHFRYWLSASPSITGYMGRSAADVAIFEPPHRPD 205          
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Match: A0A7X3WAK7_9BACT (DUF218 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WAK7_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.490e-15
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  136 RSKNTRQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACR--AGDRWRRQWRPVVLASPSDTSFVDFGPDDVAIIEPPHRPD 381
            +SKNTR E+  AGR+F     +R+ILVSSPTHLPRCLRDAC     D         + A+PS T +  +  +DVAI EPPHRPD
Sbjct:  131 KSKNTRDEIAYAGRVFVDRDVERVILVSSPTHLPRCLRDACAIYGEDGGMSGLLRELYAAPSVTGYPGYTAEDVAIFEPPHRPD 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9894.17239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A2E1VUF3_9BACT7.600e-2142.19DUF218 domain-containing protein n=1 Tax=Planctomy... [more]
A0A7S0Y436_HEMAN5.430e-2044.62Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7V7MMY6_9BACT1.250e-1843.41DUF218 domain-containing protein n=1 Tax=Planctomy... [more]
A0A7S0HX73_9CRYP1.880e-1840.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0V9E4_9CRYP2.320e-1840.77Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0YME2_9CRYP7.000e-1840.63Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0MPU1_9CRYP1.610e-1742.15Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6L8DJG4_9BACT3.870e-1653.01DUF218 domain-containing protein n=2 Tax=Gemmatimo... [more]
A0A800IHU9_9BACT4.690e-1654.22DUF218 domain-containing protein n=2 Tax=FCB group... [more]
A0A7X3WAK7_9BACT1.490e-1552.38DUF218 domain-containing protein n=1 Tax=Gemmatimo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9894contigH-elongata_contig9894:7386..8368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog55529.EKX43619
EggNOG free text desc.DUF218 domain
EggNOG OGs2ES2T@1,2SUR4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_002670.1
Exons4
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9894.17239.1prot_H-elongata_contig9894.17239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9894 7386..8368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.083583-CDS-H-elongata_contig9894:7385..75101622931379.083583-CDS-H-elongata_contig9894:7385..7510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7386..7510 -
1691679812.0696821-CDS-H-elongata_contig9894:7385..75101691679812.0696821-CDS-H-elongata_contig9894:7385..7510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7386..7510 -
1622931379.0991669-CDS-H-elongata_contig9894:7558..76251622931379.0991669-CDS-H-elongata_contig9894:7558..7625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7559..7625 -
1691679812.081656-CDS-H-elongata_contig9894:7558..76251691679812.081656-CDS-H-elongata_contig9894:7558..7625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7559..7625 -
1622931379.1163135-CDS-H-elongata_contig9894:7935..79911622931379.1163135-CDS-H-elongata_contig9894:7935..7991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7936..7991 -
1691679812.0927892-CDS-H-elongata_contig9894:7935..79911691679812.0927892-CDS-H-elongata_contig9894:7935..7991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 7936..7991 -
1622931379.1456392-CDS-H-elongata_contig9894:8235..83681622931379.1456392-CDS-H-elongata_contig9894:8235..8368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 8236..8368 -
1691679812.1006525-CDS-H-elongata_contig9894:8235..83681691679812.1006525-CDS-H-elongata_contig9894:8235..8368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9894 8236..8368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9894.17239.1

>prot_H-elongata_contig9894.17239.1 ID=prot_H-elongata_contig9894.17239.1|Name=mRNA_H-elongata_contig9894.17239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
FALEHLISNWENLGNFKEAFAEMDLEEMRKAVEPTFVTEGEFLRLRSKNT
RQELIEAGRLFRKGRCDRIILVSSPTHLPRCLRDACRAGDRWRRQWRPVV
LASPSDTSFVDFGPDDVAIIEPPHRPD
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mRNA from alignment at H-elongata_contig9894:7386..8368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9894.17239.1 ID=mRNA_H-elongata_contig9894.17239.1|Name=mRNA_H-elongata_contig9894.17239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=983bp|location=Sequence derived from alignment at H-elongata_contig9894:7386..8368- (Himanthalia elongata Himel1 dioecious)
TTTGCGCTCGAACACCTTATCAGTAACTGGGAAAACCTGGGGAATTTCAA AGAGGCATTCGCGGAAATGGATCTTGAGGAAATGAGAAAGGCGGTTGAGC CAACATTCGTCACAGAAGGCGAGTTTCTACGACGTCCATCGAGCGCGAAA GTCTCCGTGATATACAAGTATATAGTGGAAATACGCTGAAGGGCGCTAAT ATTTGGGACCCGCTTCCGGCGATTAGGTTTTGTAGCAAGTGCTACTTGTC TGATTTGAAACAGCCTCGGCATTTGTGATGGCCCTTAAGGTTAAAGAACG TTCTTAAGGTACAAGGAATAAAAAAATGTATCATACCTGATTGATTCATC GCCATCGACCGGCCCTGACGGCAACAGTACGCTCGAAGAACACAAGACAA GAATTGATTGAGGCTGGGAGACTATTCCGTAAGGTGCGCTCGTTTCAAAC AAGGCGGCAATGATCACCAAAAAATGAGCGGTGAAAGCGCGAAATTGATG CGAAGTTTCATCACCGTGAAGCCAAGGCAAGGGGGGAGTTATAATATGTT CTTTATGGATCTGTGCTACAAGGGGTGAAAGTCGTGTGCTTAGTCTTCGA GGTTCAAGCTTGCCGAGGTCGCTTTTTTTCTGGCAAGGTACGAGTATTTT TTCAGTCCAAGTTCGCGCGATGGATAGCTCTCTGGGGCGACATCATCTCC AATAAACTGTGTTTTTCCGTTGATCATTTCTCTTATTCTGCAGGGGCGAT GCGATCGCATCATACTCGTGAGCTCGCCAACACACCTACCACGCTGCTTG CGGGATGCATGTTCTCTTTGGCTGGAGCCCCCTAGCTCCAGTCCTAACGA TGATGAAGGCAGGGCCGGGGATCGTTGGAGGCGCCAGTGGCGTCCAGTGG TGCTGGCATCTCCAAGCGATACCAGCTTCGTCGACTTCGGACCGGATGAC GTAGCCATTATCGAACCTCCGCACAGGCCCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig9894:7386..8368-

>mRNA_H-elongata_contig9894.17239.1 ID=mRNA_H-elongata_contig9894.17239.1|Name=mRNA_H-elongata_contig9894.17239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig9894:7386..8368- (Himanthalia elongata Himel1 dioecious)
TTTGCGCTCGAACACCTTATCAGTAACTGGGAAAACCTGGGGAATTTCAA
AGAGGCATTCGCGGAAATGGATCTTGAGGAAATGAGAAAGGCGGTTGAGC
CAACATTCGTCACAGAAGGCGAGTTTCTACGACTTTGCGCTCGAACACCT
TATCAGTAACTGGGAAAACCTGGGGAATTTCAAAGAGGCATTCGCGGAAA
TGGATCTTGAGGAAATGAGAAAGGCGGTTGAGCCAACATTCGTCACAGAA
GGCGAGTTTCTACGACTACGCTCGAAGAACACAAGACAAGAATTGATTGA
GGCTGGGAGACTATTCCGTAAGTACGCTCGAAGAACACAAGACAAGAATT
GATTGAGGCTGGGAGACTATTCCGTAAGGGGCGATGCGATCGCATCATAC
TCGTGAGCTCGCCAACACACCTACCACGCTGCTTGCGGGATGCATGGGCG
ATGCGATCGCATCATACTCGTGAGCTCGCCAACACACCTACCACGCTGCT
TGCGGGATGCATGCAGGGCCGGGGATCGTTGGAGGCGCCAGTGGCGTCCA
GTGGTGCTGGCATCTCCAAGCGATACCAGCTTCGTCGACTTCGGACCGGA
TGACGTAGCCATTATCGAACCTCCGCACAGGCCCGATGCAGGGCCGGGGA
TCGTTGGAGGCGCCAGTGGCGTCCAGTGGTGCTGGCATCTCCAAGCGATA
CCAGCTTCGTCGACTTCGGACCGGATGACGTAGCCATTATCGAACCTCCG
CACAGGCCCGAT
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