mRNA_H-elongata_contig122463.1717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122463.1717.1
Unique NamemRNA_H-elongata_contig122463.1717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A6H5KPB7_9PHAE (TAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPB7_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.010e-44
Identity = 89/130 (68.46%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 QVSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSARG 390
            QV EVS +V+ F+SASAEYHLLD+++DAS FR+RGKRSRLTVDDV ASLELRG E+SLV        G S S +    AT AD KVDLRKVANA+LPVCP+EPGF MHWLAV+G QPLL +NP+PSS RG
Sbjct:   22 QVGEVSEDVLSFLSASAEYHLLDVINDASNFRARGKRSRLTVDDVTASLELRGAETSLVCAG-----GGSKSKDSDDSAT-ADGKVDLRKVANATLPVCPIEPGFHMHWLAVDGQQPLLPQNPLPSSGRG 145          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A835YRS7_9STRA (TAF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.810e-19
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    4 VSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIES----------SLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENP 369
            V  VS +V  F+++SAEYHL D++ +A     R KR R+T DDVN +LE+R +E+          + V            +GE    ATG D +V+  +VANA LP CP+EP   +HWLAV+G QP + +NP
Sbjct:   16 VGPVSNDVAEFLASSAEYHLKDLVQEAMKIARRSKRRRVTADDVNYALEMRSVEALYGYRASAVVAAVAXXXXXXXXXXXAGEDGDSATG-DRRVNTLEVANAGLPKCPVEPTCMLHWLAVDGRQPRIPQNP 146          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A507C5H7_9FUNG (TAF domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C5H7_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 1.130e-16
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   13 VSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            V P +   + A AEY L +I+ +A+ F + GKR +LT +D+N +L +R +E+      G  S   S S    K+   AD +VDL +V  A LP  P+   +  HWLA+ GVQP + +NP P+  +
Sbjct:   20 VRPEIATRLLADAEYRLREIICEAAKFMNHGKRRKLTTEDINQALRVRNVEALYGFGPGTNSKFRSTSTAQ-KLFYAADHEVDLEEVIAAPLPPVPLHVAYTGHWLAINGVQPSIVQNPTPAELK 143          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A8H7UCA0_9FUNG (TAF domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UCA0_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 1.670e-16
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   37 MSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            ++   +Y L +I+ +A+ F    KRSRLTVDD+NA+L +R +E       G     +  +  M  +    D +VD   + N  LP  P++  F  HWLA+EGVQP + +NP PS A+
Sbjct:   29 LAHDVDYRLQEIIQEATKFMRHSKRSRLTVDDINAALRVRNVEPLYGFTSGNPLRFKKTTANMNDIYYVGDEEVDFDTILNKPLPRVPLDVTFTAHWLAIEGVQPAIPQNPTPSDAK 145          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A507DQ29_9FUNG (TAF domain-containing protein n=3 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DQ29_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 5.550e-16
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   13 VSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            V P V   + A AEY L +I+ +A+ F   GKR +LT +D+N +L +R +E       G  S   S S    K+   AD +VDL +V  A LP  P+   +  HWLA+ GVQP + +NP P+  R
Sbjct: 2666 VRPEVATRLLADAEYRLREIICEAAKFMRHGKRRKLTTEDINQALRVRNVEPLYGYGPGTNSKFRSTS-TAHKLFYAADHEVDLEEVIAAPLPPVPLSVQYTGHWLAINGVQPSIVQNPTPAELR 2789          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A8H7PFS0_MORIS (TAF domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PFS0_MORIS)

HSP 1 Score: 82.0 bits (201), Expect = 1.110e-15
Identity = 41/117 (35.04%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   37 MSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            ++   +Y L +I+ +A  F    KR+RLTVDD+NA+L +R +E       G     +  +  M+ +    D +VD   + N  LP  P++  F  HWLA+EGVQP + +NP P+ A+
Sbjct:   32 LAHDVDYRLQEIIQEAVKFMRHSKRTRLTVDDINAALRVRNVEPLYGFTSGDPLRFKKTTANMSDIYYVGDDEVDFDTILNKPLPKVPLDVTFTAHWLAIEGVQPAIPQNPTPADAK 148          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A163LPB4_ABSGL (TAF domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163LPB4_ABSGL)

HSP 1 Score: 81.6 bits (200), Expect = 1.310e-15
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    4 VSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            +S +  +V   +    +Y + +++ +A+ F    KRS+LTVDD+NA+L ++ +E       G  S     +     +    D +VD   + N  LP  P++  F  HWLA+EGVQP + +NP PS A+
Sbjct:   18 ISNLKDDVATALGQDVDYRVQELIQEATKFMQHSKRSKLTVDDINAALRVKNVEPLYGYGCGEASKFRRTTVNNNNIYFTDDEEVDFDTILNKPLPKIPLDVSFTAHWLAIEGVQPAIPQNPTPSDAK 145          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A367JIX6_RHIAZ (TAF domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A367JIX6_RHIAZ)

HSP 1 Score: 81.6 bits (200), Expect = 1.490e-15
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    4 VSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSSAR 387
            ++ +   +   ++   EY + +++ +AS F    KR +LTVDDVNA+L ++ +E       G T      +    ++    D ++D   V N  LP  P++  F  HWLA+EGVQP + +NP P+ A+
Sbjct:   18 INNLKDEIATALAQDVEYRIHELIQEASKFMRHSKRVKLTVDDVNAALRVKNVEPLYGYTHGETPKFRKTTLNSTEIYFDEDEEIDFDSVLNKPLPKIPLDVTFTAHWLAIEGVQPAIPQNPTPNDAK 145          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: A0A1S4BIW5_TOBAC (transcription initiation factor TFIID subunit 6-like n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BIW5_TOBAC)

HSP 1 Score: 81.6 bits (200), Expect = 1.690e-15
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    4 VSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENPIPSS 381
            VS +SP+V+P +SA  EY + +I+ +A       KR+ L+ DDV+A+L LRG+E    +  G       A+G    +    +  V+L+ V  A LP  P++     HWLA++GVQP + ENP P +
Sbjct:   18 VSNLSPDVLPALSADVEYRIREIMQEAIKCMRHSKRTTLSTDDVDAALSLRGVEPIYGLASGDPLRFRRAAGHK-DLFYIEEKDVELKDVIEAPLPKAPLDTAIVAHWLAIDGVQPAIPENPPPEA 142          
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Match: M1VCU7_CYAM1 (TATA-box binding protein-associated factor 6 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VCU7_CYAM1)

HSP 1 Score: 81.3 bits (199), Expect = 2.110e-15
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    4 VSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLELRGIESSLVIDD-------GVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCPMEPGFDMHWLAVEGVQPLLAENP--IPSSAR 387
            ++ +  +V  +++  AEY L +I+ +A  F    KR RL   D+ A+L LR +E              GVT  GES+ G    V    D +VDLR + +  LP  P+E    +HWLA+EG+QP + +NP  + S+AR
Sbjct:   33 IARLREDVAAYLATDAEYRLREIIQEAGKFMRHSKRRRLKTSDIAAALRLRNLEPLYGFSSNESAPFVGVTLPGESSLGGSNTVYFVGDEEVDLRDILDGELPRVPLETTLALHWLAIEGIQPRIPQNPADVSSTAR 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122463.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPB7_9PHAE1.010e-4468.46TAF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YRS7_9STRA4.810e-1940.91TAF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A507C5H7_9FUNG1.130e-1636.80TAF domain-containing protein n=1 Tax=Synchytrium ... [more]
A0A8H7UCA0_9FUNG1.670e-1636.75TAF domain-containing protein n=1 Tax=Umbelopsis v... [more]
A0A507DQ29_9FUNG5.550e-1638.40TAF domain-containing protein n=3 Tax=Synchytrium ... [more]
A0A8H7PFS0_MORIS1.110e-1535.04TAF domain-containing protein n=1 Tax=Mortierella ... [more]
A0A163LPB4_ABSGL1.310e-1532.03TAF domain-containing protein n=1 Tax=Absidia glau... [more]
A0A367JIX6_RHIAZ1.490e-1531.25TAF domain-containing protein n=4 Tax=Rhizopus Tax... [more]
A0A1S4BIW5_TOBAC1.690e-1536.51transcription initiation factor TFIID subunit 6-li... [more]
M1VCU7_CYAM12.110e-1535.04TATA-box binding protein-associated factor 6 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122463contigH-elongata_contig122463:660..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue5.2e-39
Seed eggNOG ortholog2880.D8LDH0
KEGG koko:K03131
KEGG Pathwayko03022,ko05168,map03022,map05168
EggNOG free text desc.Transcription initiation factor TFIID
EggNOG OGsCOG5095@1,KOG2549@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122463.1717.1prot_H-elongata_contig122463.1717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122463 660..1553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.8141725-CDS-H-elongata_contig122463:659..8241622929720.8141725-CDS-H-elongata_contig122463:659..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 660..824 +
1691679132.1661766-CDS-H-elongata_contig122463:659..8241691679132.1661766-CDS-H-elongata_contig122463:659..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 660..824 +
1622929720.8319526-CDS-H-elongata_contig122463:978..10831622929720.8319526-CDS-H-elongata_contig122463:978..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 979..1083 +
1691679132.1901145-CDS-H-elongata_contig122463:978..10831691679132.1901145-CDS-H-elongata_contig122463:978..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 979..1083 +
1622929720.8499033-CDS-H-elongata_contig122463:1433..15531622929720.8499033-CDS-H-elongata_contig122463:1433..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 1434..1553 +
1691679132.2007098-CDS-H-elongata_contig122463:1433..15531691679132.2007098-CDS-H-elongata_contig122463:1433..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122463 1434..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122463.1717.1

>prot_H-elongata_contig122463.1717.1 ID=prot_H-elongata_contig122463.1717.1|Name=mRNA_H-elongata_contig122463.1717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
QVSEVSPNVIPFMSASAEYHLLDILHDASMFRSRGKRSRLTVDDVNASLE
LRGIESSLVIDDGVTSLGESASGEMAKVATGADVKVDLRKVANASLPVCP
MEPGFDMHWLAVEGVQPLLAENPIPSSARG
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mRNA from alignment at H-elongata_contig122463:660..1553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122463.1717.1 ID=mRNA_H-elongata_contig122463.1717.1|Name=mRNA_H-elongata_contig122463.1717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig122463:660..1553+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAGCGAAGTCTCCCCGAACGTCATACCCTTCATGTCGGCATCAGC TGAATACCATCTCCTGGACATTCTCCACGACGCTTCCATGTTCCGATCGC GAGGGAAGAGGTCGCGCCTCACTGTCGACGACGTCAACGCCTCGTTGGAA CTCCGCGGGATTGAGGTGCTACTACAGAGATCGCCATATTGTGTGCTAAC ACACGAAGTTTGATGATGACGTGGCATTCCTCGCCCCAGTCGAACAGATC ACCGGCTGATGTAATATTTTGCCTTATGTTCCTTGCCTGATTCATCTCCC CCTTTGGAATCGCGGTTAGAGCTCCCTGGTGATCGACGACGGTGTCACGA GTCTCGGGGAGAGCGCCTCCGGGGAGATGGCTAAGGTCGCTACAGGCGCC GACGTTAAGGTTGACCTCCGAAAGGTGAGCAAGTCCAGTTGTAGGTGCGG AAGGGTGTTTTAGATCGGTTATAGCTAGATCATGATCATGATCGGCCGGG GAGCGCGATTGAAGAACATTTATGAAAAAGAGGATCCGTGTTGACCTTTC ACGCGTTTTGGCGGGTGTCTGTGGCTGCGCCGGTGCAGCAGTGTAGCAAC CCTAGTGCAATGACGCCGCGACCTTCTTTATCCTCCCTTTCCCCCCCCCG GGGCACCGACTACTGAGTGTCGCGGACGCCCAGGCAATGCCGCGGGGTGA GCCGTGTCGTATGTAATATACGCGCGATGGGTTTGATCGACCGGCCGTGT GAACGCACCAACTGACGTTGTCAGGTGGCGAATGCGTCTCTTCCGGTATG TCCGATGGAGCCGGGGTTCGACATGCACTGGCTGGCCGTGGAAGGCGTGC AGCCCTTGCTGGCCGAAAACCCCATCCCATCGTCCGCTAGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig122463:660..1553+

>mRNA_H-elongata_contig122463.1717.1 ID=mRNA_H-elongata_contig122463.1717.1|Name=mRNA_H-elongata_contig122463.1717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig122463:660..1553+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAGCGAAGTCTCCCCGAACGTCATACCCTTCATGTCGGCATCAGC
TGAATACCATCTCCTGGACATTCTCCACGACGCTTCCATGTTCCGATCGC
GAGGGAAGAGGTCGCGCCTCACTGTCGACGACGTCAACGCCTCGTTGGAA
CTCCGCGGGATTGAGCAGGTGAGCGAAGTCTCCCCGAACGTCATACCCTT
CATGTCGGCATCAGCTGAATACCATCTCCTGGACATTCTCCACGACGCTT
CCATGTTCCGATCGCGAGGGAAGAGGTCGCGCCTCACTGTCGACGACGTC
AACGCCTCGTTGGAACTCCGCGGGATTGAGAGCTCCCTGGTGATCGACGA
CGGTGTCACGAGTCTCGGGGAGAGCGCCTCCGGGGAGATGGCTAAGGTCG
CTACAGGCGCCGACGTTAAGGTTGACCTCCGAAAGAGCTCCCTGGTGATC
GACGACGGTGTCACGAGTCTCGGGGAGAGCGCCTCCGGGGAGATGGCTAA
GGTCGCTACAGGCGCCGACGTTAAGGTTGACCTCCGAAAGGTGGCGAATG
CGTCTCTTCCGGTATGTCCGATGGAGCCGGGGTTCGACATGCACTGGCTG
GCCGTGGAAGGCGTGCAGCCCTTGCTGGCCGAAAACCCCATCCCATCGTC
CGCTAGAGGTGTGGCGAATGCGTCTCTTCCGGTATGTCCGATGGAGCCGG
GGTTCGACATGCACTGGCTGGCCGTGGAAGGCGTGCAGCCCTTGCTGGCC
GAAAACCCCATCCCATCGTCCGCTAGAGGT
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