prot_H-elongata_contig97539.17108.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig97539.17108.1
Unique Nameprot_H-elongata_contig97539.17108.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.100e-33
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVILEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY+SIIKL+SENKITRDKCWGLHLIDYMD+VIL+EGGQ GGSKVNFQKASCTLDASVKIYSHR
Sbjct:    1 MYSSIIKLSSENKITRDKCWGLHLIDYMDRVILDEGGQMGGSKVNFQKASCTLDASVKIYSHR 63          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.160e-32
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVILEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY+SIIKL+SENKITRDKCWGLHLIDYMD+VIL+EGGQ GGSKVNFQKASCTLDASVKIYSHR
Sbjct:    1 MYSSIIKLSSENKITRDKCWGLHLIDYMDRVILDEGGQMGGSKVNFQKASCTLDASVKIYSHR 63          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A835Z1S3_9STRA (Condensin complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.060e-17
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVILEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY+ IIKL+SENKI     W L+LI++MD++IL E G  G ++VNFQKASCTLDAS+KIYS+R
Sbjct:   52 MYSQIIKLSSENKINAKNSWSLNLIEHMDRMILSEAG--GRNRVNFQKASCTLDASIKIYSYR 112          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A484DXY5_BRELC (Condensin complex subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY5_BRELC)

HSP 1 Score: 77.8 bits (190), Expect = 3.030e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKV------ILEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID+M+ +      ++ +GG A     NFQ+ASCTLDASVKIYS+R
Sbjct:  107 MYSTIIKMSSENKINVKNSWSLHLIDHMEDILQSSKRVVADGGDADDDTYNFQRASCTLDASVKIYSYR 175          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A329ST35_9STRA (Condensin complex subunit 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329ST35_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.030e-15
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVI-----LEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID+M+ ++     +   G AG    NFQKASCTLDAS+KIYS+R
Sbjct:  103 MYSTIIKMSSENKINVKNSWSLHLIDHMEDILDSSKRIAADGDAGDDTYNFQKASCTLDASIKIYSYR 170          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A1V9ZXS7_9STRA (Condensin complex subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXS7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.440e-14
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVILEEGGQAGG--SKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID++D +++E+  +        NFQKASCTLDASVKIYS+R
Sbjct:  127 MYSTIIKMSSENKINSKNSWSLHLIDHIDDILVEKRQEDASPTDTYNFQKASCTLDASVKIYSYR 191          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A8K1CI00_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI00_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 1.970e-14
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVI------LEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID+M+ ++      +++G +      NFQKASCTLDASVKIYS+R
Sbjct:   88 MYSTIIKMSSENKINIKNSWSLHLIDHMEDILSSSQAGVQDGEEEDDGTFNFQKASCTLDASVKIYSYR 156          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A833TFZ0_PHYIN (Condensin complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TFZ0_PHYIN)

HSP 1 Score: 75.1 bits (183), Expect = 2.680e-14
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVI-----LEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID+M+ ++     +   G A     NFQKASCTLDAS+KIYS+R
Sbjct:  103 MYSTIIKMSSENKINVKNSWSLHLIDHMEDILDSSKRIAADGDADDDTYNFQKASCTLDASIKIYSYR 170          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: W2R9G9_PHYPN (Condensin complex subunit 2 n=8 Tax=Phytophthora TaxID=4783 RepID=W2R9G9_PHYPN)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-14
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVI-----LEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID+M+ ++     +   G A     NFQKASCTLDAS+KIYS+R
Sbjct:  103 MYSTIIKMSSENKINVKNSWSLHLIDHMEDILDSSKRIAADGDADDDTYNFQKASCTLDASIKIYSYR 170          
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Match: A0A024UH53_9STRA (Condensin complex subunit 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH53_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.670e-14
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    1 MYNSIIKLNSENKITRDKCWGLHLIDYMDKVI--------LEEGGQAGGSKVNFQKASCTLDASVKIYSHR 63
            MY++IIK++SENKI     W LHLID++D ++        L E   AG +  NFQKASCTLDASVKIYS+R
Sbjct:  177 MYSTIIKMSSENKINSKNSWSLHLIDHIDDILSGKRHEDELPESAAAGDT-YNFQKASCTLDASVKIYSYR 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97539.17108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K318_9PHAE3.100e-3392.06Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
D8LD70_ECTSI5.160e-3292.06Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A835Z1S3_9STRA2.060e-1763.49Condensin complex subunit 2 n=1 Tax=Tribonema minu... [more]
A0A484DXY5_BRELC3.030e-1553.62Condensin complex subunit 2 n=1 Tax=Bremia lactuca... [more]
A0A329ST35_9STRA3.030e-1554.41Condensin complex subunit 2 n=2 Tax=Phytophthora T... [more]
A0A1V9ZXS7_9STRA1.440e-1455.38Condensin complex subunit 2 n=1 Tax=Thraustotheca ... [more]
A0A8K1CI00_PYTOL1.970e-1452.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A833TFZ0_PHYIN2.680e-1452.94Condensin complex subunit 2 n=1 Tax=Phytophthora i... [more]
W2R9G9_PHYPN2.690e-1452.94Condensin complex subunit 2 n=8 Tax=Phytophthora T... [more]
A0A024UH53_9STRA3.670e-1454.93Condensin complex subunit 2 n=1 Tax=Aphanomyces in... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 2..63
e-value: 1.2E-22
score: 80.5
IPR022816Condensin complex subunit 2/barrenPANTHERPTHR13108FAMILY NOT NAMEDcoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97539contigH-elongata_contig97539:308..2030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97539.17108.1mRNA_H-elongata_contig97539.17108.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig97539 308..2048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig97539.17108.1 ID=prot_H-elongata_contig97539.17108.1|Name=mRNA_H-elongata_contig97539.17108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MYNSIIKLNSENKITRDKCWGLHLIDYMDKVILEEGGQAGGSKVNFQKAS
CTLDASVKIYSHR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2